RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 PLIN4Q96Q06 1357 aa16.41■□□□□ 0.22
CLK3-209ENST00000562670 SIPA1L1O43166 1804 aa16.41■□□□□ 0.22
CLK3-209ENST00000562670 SH2B2O14492 632 aaPredicted RBP16.41■□□□□ 0.22
CLK3-209ENST00000562670 KDM4AO75164 1064 aa16.41■□□□□ 0.22
CLK3-209ENST00000562670 HLA-DOAP06340 250 aa16.41■□□□□ 0.22
CLK3-209ENST00000562670 GMPSP49915 693 aaPredicted RBP16.41■□□□□ 0.22
CLK3-209ENST00000562670 RCAN1P53805 252 aa16.41■□□□□ 0.22
CLK3-209ENST00000562670 NFIAQ12857 509 aa16.41■□□□□ 0.22
CLK3-209ENST00000562670 CYB5R4Q7L1T6 521 aa16.41■□□□□ 0.22
CLK3-209ENST00000562670 BRF1Q92994 677 aa16.41■□□□□ 0.22
CLK3-209ENST00000562670 CHMP4CQ96CF2 233 aa16.41■□□□□ 0.22
CLK3-209ENST00000562670 ZNF274Q96GC6 653 aaPredicted RBP16.41■□□□□ 0.22
CLK3-209ENST00000562670 TCEANC2Q96MN5 208 aa16.41■□□□□ 0.22
CLK3-209ENST00000562670 SWAP70Q9UH65 585 aa16.41■□□□□ 0.22
CLK3-209ENST00000562670 TPCN1Q9ULQ1 816 aa16.41■□□□□ 0.22
CLK3-209ENST00000562670 PCDHAC2Q9Y5I4 1007 aa16.41■□□□□ 0.22
CLK3-209ENST00000562670 MYO1BO43795 1136 aa16.4■□□□□ 0.22
CLK3-209ENST00000562670 DDIT3P35638 169 aa16.4■□□□□ 0.22
CLK3-209ENST00000562670 SLC4A3P48751 1232 aa16.4■□□□□ 0.22
CLK3-209ENST00000562670 PLCD1P51178 756 aa16.4■□□□□ 0.22
CLK3-209ENST00000562670 FGD1P98174 961 aa16.4■□□□□ 0.22
CLK3-209ENST00000562670 PICALMQ13492 652 aa16.4■□□□□ 0.22
CLK3-209ENST00000562670 FAM83AQ86UY5 434 aa16.4■□□□□ 0.22
CLK3-209ENST00000562670 METTL16Q86W50 562 aaKnown RBP16.4■□□□□ 0.22
CLK3-209ENST00000562670 IGDCC4Q8TDY8 1250 aa16.4■□□□□ 0.22
CLK3-209ENST00000562670 TDRD3Q9H7E2 651 aaKnown RBP16.4■□□□□ 0.22
CLK3-209ENST00000562670 ZSWIM5Q9P217 1185 aa16.4■□□□□ 0.22
CLK3-209ENST00000562670 SAP30BPQ9UHR5 308 aaKnown RBP16.4■□□□□ 0.22
CLK3-209ENST00000562670 SMIM22K7EJ46 135 aa16.39■□□□□ 0.21
CLK3-209ENST00000562670 WNT10BO00744 389 aa16.39■□□□□ 0.21
CLK3-209ENST00000562670 HSP90AA1P07900 732 aaKnown RBP16.39■□□□□ 0.21
CLK3-209ENST00000562670 ME3Q16798 604 aa16.39■□□□□ 0.21
CLK3-209ENST00000562670 CCDC178Q5BJE1 867 aa16.39■□□□□ 0.21
CLK3-209ENST00000562670 IQCA1Q86XH1 822 aa16.39■□□□□ 0.21
CLK3-209ENST00000562670 MICALL2Q8IY33 904 aa16.39■□□□□ 0.21
CLK3-209ENST00000562670 TMTC2Q8N394 836 aa16.39■□□□□ 0.21
CLK3-209ENST00000562670 LY9Q9HBG7 655 aa16.39■□□□□ 0.21
CLK3-209ENST00000562670 CWC22Q9HCG8 908 aaKnown RBP16.39■□□□□ 0.21
CLK3-209ENST00000562670 RNF181Q9P0P0 153 aa16.39■□□□□ 0.21
CLK3-209ENST00000562670 ZNF70Q9UC06 446 aaPredicted RBP16.39■□□□□ 0.21
CLK3-209ENST00000562670 SERPINB13Q9UIV8 391 aa16.39■□□□□ 0.21
CLK3-209ENST00000562670 CIZ1Q9ULV3 898 aaPredicted RBP16.39■□□□□ 0.21
CLK3-209ENST00000562670 PFKFB2O60825 505 aa16.38■□□□□ 0.21
CLK3-209ENST00000562670 EVX2Q03828 476 aa16.38■□□□□ 0.21
CLK3-209ENST00000562670 NKX2-3Q8TAU0 364 aa16.38■□□□□ 0.21
CLK3-209ENST00000562670 FAM151AQ8WW52 585 aa16.38■□□□□ 0.21
CLK3-209ENST00000562670 GTF3C6Q969F1 213 aa16.38■□□□□ 0.21
CLK3-209ENST00000562670 UBAC1Q9BSL1 405 aa16.38■□□□□ 0.21
CLK3-209ENST00000562670 LRRC2Q9BYS8 371 aa16.38■□□□□ 0.21
CLK3-209ENST00000562670 TOMM22Q9NS69 142 aa16.38■□□□□ 0.21
CLK3-209ENST00000562670 TCP11L1Q9NUJ3 509 aa16.38■□□□□ 0.21
CLK3-209ENST00000562670 GPRC5DQ9NZD1 345 aa16.38■□□□□ 0.21
CLK3-209ENST00000562670 PI4KBQ9UBF8 816 aa16.38■□□□□ 0.21
CLK3-209ENST00000562670 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.38■□□□□ 0.21
CLK3-209ENST00000562670 GREB1LQ9C091 1923 aaPredicted RBP16.37■□□□□ 0.21
CLK3-209ENST00000562670 ERICH2A1L162 156 aa16.37■□□□□ 0.21
CLK3-209ENST00000562670 IFIT3O14879 490 aaKnown RBP16.37■□□□□ 0.21
CLK3-209ENST00000562670 LARGE1O95461 756 aa16.37■□□□□ 0.21
CLK3-209ENST00000562670 RASA1P20936 1047 aa16.37■□□□□ 0.21
CLK3-209ENST00000562670 CDK8P49336 464 aa16.37■□□□□ 0.21
CLK3-209ENST00000562670 TNFAIP1Q13829 316 aa16.37■□□□□ 0.21
CLK3-209ENST00000562670 SEC23AQ15436 765 aa16.37■□□□□ 0.21
CLK3-209ENST00000562670 TMEM67Q5HYA8 995 aa16.37■□□□□ 0.21
CLK3-209ENST00000562670 RRP12Q5JTH9 1297 aaKnown RBP16.37■□□□□ 0.21
CLK3-209ENST00000562670 C9orf131Q5VYM1 1079 aa16.37■□□□□ 0.21
CLK3-209ENST00000562670 NOL8Q76FK4 1167 aaKnown RBP16.37■□□□□ 0.21
CLK3-209ENST00000562670 CHST3Q7LGC8 479 aa16.37■□□□□ 0.21
CLK3-209ENST00000562670 MKNK2Q9HBH9 465 aa16.37■□□□□ 0.21
CLK3-209ENST00000562670 INCENPQ9NQS7 918 aa16.37■□□□□ 0.21
CLK3-209ENST00000562670 CNOT7Q9UIV1 285 aaKnown RBP16.37■□□□□ 0.21
CLK3-209ENST00000562670 GJA3Q9Y6H8 435 aa16.37■□□□□ 0.21
CLK3-209ENST00000562670 TNKSO95271 1327 aa16.37■□□□□ 0.21
CLK3-209ENST00000562670 CNTNAP1P78357 1384 aa16.37■□□□□ 0.21
CLK3-209ENST00000562670 H7C1D1 291 aa16.36■□□□□ 0.21
CLK3-209ENST00000562670 RANBP6O60518 1105 aaKnown RBP16.36■□□□□ 0.21
CLK3-209ENST00000562670 ST3GAL1Q11201 340 aa16.36■□□□□ 0.21
CLK3-209ENST00000562670 GPR162Q16538 588 aa16.36■□□□□ 0.21
CLK3-209ENST00000562670 KIF4BQ2VIQ3 1234 aa16.36■□□□□ 0.21
CLK3-209ENST00000562670 ANKS1AQ92625 1134 aa16.36■□□□□ 0.21
CLK3-209ENST00000562670 DYNLL2Q96FJ2 89 aa16.36■□□□□ 0.21
CLK3-209ENST00000562670 L3MBTL3Q96JM7 780 aaPredicted RBP16.36■□□□□ 0.21
CLK3-209ENST00000562670 ZSCAN10Q96SZ4 725 aaPredicted RBP16.36■□□□□ 0.21
CLK3-209ENST00000562670 LLPHQ9BRT6 129 aaKnown RBP16.36■□□□□ 0.21
CLK3-209ENST00000562670 MYH8P13535 1937 aa16.35■□□□□ 0.21
CLK3-209ENST00000562670 TSPY2A6NKD2 308 aa16.35■□□□□ 0.21
CLK3-209ENST00000562670 PRDM1O75626 825 aa16.35■□□□□ 0.21
CLK3-209ENST00000562670 PDIA3P30101 505 aaKnown RBP16.35■□□□□ 0.21
CLK3-209ENST00000562670 NOVP48745 357 aa16.35■□□□□ 0.21
CLK3-209ENST00000562670 TNNI2P48788 182 aa16.35■□□□□ 0.21
CLK3-209ENST00000562670 CACNB3P54284 484 aa16.35■□□□□ 0.21
CLK3-209ENST00000562670 APOBRQ0VD83 1088 aa16.35■□□□□ 0.21
CLK3-209ENST00000562670 WTAPQ15007 396 aa16.35■□□□□ 0.21
CLK3-209ENST00000562670 APOA5Q6Q788 366 aa16.35■□□□□ 0.21
CLK3-209ENST00000562670 SH3BP5LQ7L8J4 393 aa16.35■□□□□ 0.21
CLK3-209ENST00000562670 DGKHQ86XP1 1220 aa16.35■□□□□ 0.21
CLK3-209ENST00000562670 FOXP4Q8IVH2 680 aaPredicted RBP16.35■□□□□ 0.21
CLK3-209ENST00000562670 ENAHQ8N8S7 591 aaPredicted RBP16.35■□□□□ 0.21
CLK3-209ENST00000562670 NEDD1Q8NHV4 660 aa16.35■□□□□ 0.21
CLK3-209ENST00000562670 SLKQ9H2G2 1235 aaPredicted RBP16.35■□□□□ 0.21
CLK3-209ENST00000562670 HERC5Q9UII4 1024 aaKnown RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms