RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 LARGE1O95461 756 aa16.02■□□□□ 0.16
VPS39-206ENST00000562662 CUL4AQ13619 759 aa16.02■□□□□ 0.16
VPS39-206ENST00000562662 RRP12Q5JTH9 1297 aaKnown RBP16.02■□□□□ 0.16
VPS39-206ENST00000562662 C9orf131Q5VYM1 1079 aa16.02■□□□□ 0.16
VPS39-206ENST00000562662 ZFPM1Q8IX07 1006 aa16.02■□□□□ 0.16
VPS39-206ENST00000562662 MICALL2Q8IY33 904 aa16.02■□□□□ 0.16
VPS39-206ENST00000562662 GPC2Q8N158 579 aa16.02■□□□□ 0.16
VPS39-206ENST00000562662 DYNLL2Q96FJ2 89 aa16.02■□□□□ 0.16
VPS39-206ENST00000562662 LARP6Q9BRS8 491 aaKnown RBP16.02■□□□□ 0.16
VPS39-206ENST00000562662 ZSWIM5Q9P217 1185 aa16.02■□□□□ 0.16
VPS39-206ENST00000562662 ZNF70Q9UC06 446 aaPredicted RBP16.02■□□□□ 0.16
VPS39-206ENST00000562662 TPCN1Q9ULQ1 816 aa16.02■□□□□ 0.16
VPS39-206ENST00000562662 GREB1LQ9C091 1923 aaPredicted RBP16.02■□□□□ 0.15
VPS39-206ENST00000562662 WNT10BO00744 389 aa16.01■□□□□ 0.15
VPS39-206ENST00000562662 ENTPD3O75355 529 aa16.01■□□□□ 0.15
VPS39-206ENST00000562662 PRDM1O75626 825 aa16.01■□□□□ 0.15
VPS39-206ENST00000562662 PDE4BQ07343 736 aa16.01■□□□□ 0.15
VPS39-206ENST00000562662 C16orf86Q6ZW13 317 aa16.01■□□□□ 0.15
VPS39-206ENST00000562662 ESR2Q92731 530 aa16.01■□□□□ 0.15
VPS39-206ENST00000562662 BRF1Q92994 677 aa16.01■□□□□ 0.15
VPS39-206ENST00000562662 GPHNQ9NQX3 736 aaPredicted RBP16.01■□□□□ 0.15
VPS39-206ENST00000562662 TOMM22Q9NS69 142 aa16.01■□□□□ 0.15
VPS39-206ENST00000562662 CNOT7Q9UIV1 285 aaKnown RBP16.01■□□□□ 0.15
VPS39-206ENST00000562662 ATRNL1Q5VV63 1379 aa16■□□□□ 0.15
VPS39-206ENST00000562662 CLRN2A0PK11 232 aa16■□□□□ 0.15
VPS39-206ENST00000562662 SH2B2O14492 632 aaPredicted RBP16■□□□□ 0.15
VPS39-206ENST00000562662 GRIN3BO60391 1043 aa16■□□□□ 0.15
VPS39-206ENST00000562662 EGFRP00533 1210 aa16■□□□□ 0.15
VPS39-206ENST00000562662 GABPAQ06546 454 aa16■□□□□ 0.15
VPS39-206ENST00000562662 ME3Q16798 604 aa16■□□□□ 0.15
VPS39-206ENST00000562662 NBPF9Q3BBW0 867 aa16■□□□□ 0.15
VPS39-206ENST00000562662 SH3BP5LQ7L8J4 393 aa16■□□□□ 0.15
VPS39-206ENST00000562662 TTC6Q86TZ1 520 aa16■□□□□ 0.15
VPS39-206ENST00000562662 IGDCC4Q8TDY8 1250 aa16■□□□□ 0.15
VPS39-206ENST00000562662 TMEM87BQ96K49 555 aa16■□□□□ 0.15
VPS39-206ENST00000562662 ZSCAN31Q96LW9 406 aaPredicted RBP16■□□□□ 0.15
VPS39-206ENST00000562662 MTA3Q9BTC8 594 aa16■□□□□ 0.15
VPS39-206ENST00000562662 TMOD2Q9NZR1 351 aa16■□□□□ 0.15
VPS39-206ENST00000562662 CNTNAP1P78357 1384 aa16■□□□□ 0.15
VPS39-206ENST00000562662 POLR2AP24928 1970 aaKnown RBP15.99■□□□□ 0.15
VPS39-206ENST00000562662 DDTLA6NHG4 134 aaPredicted RBP15.99■□□□□ 0.15
VPS39-206ENST00000562662 CDK8P49336 464 aa15.99■□□□□ 0.15
VPS39-206ENST00000562662 NT5C2P49902 561 aa15.99■□□□□ 0.15
VPS39-206ENST00000562662 EVCP57679 992 aa15.99■□□□□ 0.15
VPS39-206ENST00000562662 FGD1P98174 961 aa15.99■□□□□ 0.15
VPS39-206ENST00000562662 APOBRQ0VD83 1088 aa15.99■□□□□ 0.15
VPS39-206ENST00000562662 ST3GAL1Q11201 340 aa15.99■□□□□ 0.15
VPS39-206ENST00000562662 TCP10Q12799 353 aa15.99■□□□□ 0.15
VPS39-206ENST00000562662 FKBP1CQ5VVH2 108 aa15.99■□□□□ 0.15
VPS39-206ENST00000562662 SPRYD3Q8NCJ5 442 aa15.99■□□□□ 0.15
VPS39-206ENST00000562662 SLC44A5Q8NCS7 719 aa15.99■□□□□ 0.15
VPS39-206ENST00000562662 EHD4Q9H223 541 aa15.99■□□□□ 0.15
VPS39-206ENST00000562662 DHX36Q9H2U1 1008 aaKnown RBP15.99■□□□□ 0.15
VPS39-206ENST00000562662 SH2B1Q9NRF2 756 aaPredicted RBP15.99■□□□□ 0.15
VPS39-206ENST00000562662 GPRC5DQ9NZD1 345 aa15.99■□□□□ 0.15
VPS39-206ENST00000562662 RANBP6O60518 1105 aaKnown RBP15.98■□□□□ 0.15
VPS39-206ENST00000562662 HLA-DOAP06340 250 aa15.98■□□□□ 0.15
VPS39-206ENST00000562662 RASA1P20936 1047 aa15.98■□□□□ 0.15
VPS39-206ENST00000562662 SAMD7Q7Z3H4 446 aa15.98■□□□□ 0.15
VPS39-206ENST00000562662 LY9Q9HBG7 655 aa15.98■□□□□ 0.15
VPS39-206ENST00000562662 ANGEL1Q9UNK9 670 aaKnown RBP15.98■□□□□ 0.15
VPS39-206ENST00000562662 TCP10L2B9ZVM9 353 aa15.97■□□□□ 0.15
VPS39-206ENST00000562662 H7C1D1 291 aa15.97■□□□□ 0.15
VPS39-206ENST00000562662 IFIT3O14879 490 aaKnown RBP15.97■□□□□ 0.15
VPS39-206ENST00000562662 MYO1BO43795 1136 aa15.97■□□□□ 0.15
VPS39-206ENST00000562662 DDNO94850 711 aaPredicted RBP15.97■□□□□ 0.15
VPS39-206ENST00000562662 SEC23AQ15436 765 aa15.97■□□□□ 0.15
VPS39-206ENST00000562662 KIF4BQ2VIQ3 1234 aa15.97■□□□□ 0.15
VPS39-206ENST00000562662 TBC1D10BQ4KMP7 808 aaPredicted RBP15.97■□□□□ 0.15
VPS39-206ENST00000562662 FAM47AQ5JRC9 791 aa15.97■□□□□ 0.15
VPS39-206ENST00000562662 RBM26Q5T8P6 1007 aaKnown RBP15.97■□□□□ 0.15
VPS39-206ENST00000562662 FAM151AQ8WW52 585 aa15.97■□□□□ 0.15
VPS39-206ENST00000562662 ZKSCAN3Q9BRR0 538 aa15.97■□□□□ 0.15
VPS39-206ENST00000562662 MKNK2Q9HBH9 465 aa15.97■□□□□ 0.15
VPS39-206ENST00000562662 VEZTQ9HBM0 779 aa15.97■□□□□ 0.15
VPS39-206ENST00000562662 SENP2Q9HC62 589 aa15.97■□□□□ 0.15
VPS39-206ENST00000562662 FOXD4L1Q9NU39 408 aa15.97■□□□□ 0.15
VPS39-206ENST00000562662 SERPINB13Q9UIV8 391 aa15.97■□□□□ 0.15
VPS39-206ENST00000562662 ZC3H4Q9UPT8 1303 aaKnown RBP15.96■□□□□ 0.15
VPS39-206ENST00000562662 SCN4AP35499 1836 aa15.96■□□□□ 0.15
VPS39-206ENST00000562662 LIFRP42702 1097 aa15.96■□□□□ 0.15
VPS39-206ENST00000562662 TMEM67Q5HYA8 995 aa15.96■□□□□ 0.15
VPS39-206ENST00000562662 FAM83AQ86UY5 434 aa15.96■□□□□ 0.15
VPS39-206ENST00000562662 SGMS1Q86VZ5 419 aa15.96■□□□□ 0.15
VPS39-206ENST00000562662 METTL16Q86W50 562 aaKnown RBP15.96■□□□□ 0.15
VPS39-206ENST00000562662 TRPM4Q8TD43 1214 aa15.96■□□□□ 0.15
VPS39-206ENST00000562662 ZNF274Q96GC6 653 aaPredicted RBP15.96■□□□□ 0.15
VPS39-206ENST00000562662 INTS4Q96HW7 963 aaKnown RBP15.96■□□□□ 0.15
VPS39-206ENST00000562662 DNAJC18Q9H819 358 aa15.96■□□□□ 0.15
VPS39-206ENST00000562662 ZNF287Q9HBT7 754 aa15.96■□□□□ 0.15
VPS39-206ENST00000562662 SWAP70Q9UH65 585 aa15.96■□□□□ 0.15
VPS39-206ENST00000562662 BRPF3Q9ULD4 1205 aa15.96■□□□□ 0.15
VPS39-206ENST00000562662 MYH4Q9Y623 1939 aa15.96■□□□□ 0.14
VPS39-206ENST00000562662 TNKSO95271 1327 aa15.95■□□□□ 0.14
VPS39-206ENST00000562662 KLF18A0A0U1RQI7 1052 aa15.95■□□□□ 0.14
VPS39-206ENST00000562662 PFKFB2O60825 505 aa15.95■□□□□ 0.14
VPS39-206ENST00000562662 HSP90AA1P07900 732 aaKnown RBP15.95■□□□□ 0.14
VPS39-206ENST00000562662 SHMT1P34896 483 aa15.95■□□□□ 0.14
VPS39-206ENST00000562662 DDIT3P35638 169 aa15.95■□□□□ 0.14
VPS39-206ENST00000562662 EPS15P42566 896 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms