RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 SRGNP10124 158 aa10.62□□□□□ -0.71
VPS39-205ENST00000562258 RPS6KB1P23443 525 aa10.62□□□□□ -0.71
VPS39-205ENST00000562258 TXNRD3Q86VQ6 643 aa10.62□□□□□ -0.71
VPS39-205ENST00000562258 TMEM232C9JQI7 657 aa10.62□□□□□ -0.71
VPS39-205ENST00000562258 SORBS3O60504 671 aa10.62□□□□□ -0.71
VPS39-205ENST00000562258 MTX1Q13505 466 aa10.62□□□□□ -0.71
VPS39-205ENST00000562258 ZMYM1Q5SVZ6 1142 aa10.62□□□□□ -0.71
VPS39-205ENST00000562258 TMEM87BQ96K49 555 aa10.62□□□□□ -0.71
VPS39-205ENST00000562258 MCM7P33993 719 aa10.62□□□□□ -0.71
VPS39-205ENST00000562258 RASEFQ8IZ41 740 aa10.62□□□□□ -0.71
VPS39-205ENST00000562258 ADAMTSL3P82987 1691 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 RTL9Q8NET4 1388 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 MBD3O95983 291 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 CYP21A2P08686 494 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 SLC16A2P36021 539 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 TRAF1Q13077 416 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 WRNIP1Q96S55 665 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 PI4KBQ9UBF8 816 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 AOX1Q06278 1338 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 ZBED4O75132 1171 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 SLFN13Q68D06 897 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 MPHOSPH6Q99547 160 aaKnown RBP10.61□□□□□ -0.71
VPS39-205ENST00000562258 DSCC1Q9BVC3 393 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 PSMD14O00487 310 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 CHMP2AO43633 222 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 GH2P01242 217 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 CNGA1P29973 690 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 GMPSP49915 693 aaPredicted RBP10.61□□□□□ -0.71
VPS39-205ENST00000562258 KCTD1Q719H9 257 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 ZNF654Q8IZM8 581 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 FSIP1Q8NA03 581 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 KCNJ14Q9UNX9 436 aa10.61□□□□□ -0.71
VPS39-205ENST00000562258 WTIPA6NIX2 430 aaPredicted RBP10.6□□□□□ -0.71
VPS39-205ENST00000562258 TPM3P06753 285 aa10.6□□□□□ -0.71
VPS39-205ENST00000562258 CALML3P27482 149 aa10.6□□□□□ -0.71
VPS39-205ENST00000562258 MRPL12P52815 198 aaKnown RBP10.6□□□□□ -0.71
VPS39-205ENST00000562258 ADCK5Q3MIX3 580 aa10.6□□□□□ -0.71
VPS39-205ENST00000562258 ARMC9Q7Z3E5 817 aa10.6□□□□□ -0.71
VPS39-205ENST00000562258 NCAPG2Q86XI2 1143 aa10.6□□□□□ -0.71
VPS39-205ENST00000562258 SCAND2PQ9GZW5 306 aaPredicted RBP10.6□□□□□ -0.71
VPS39-205ENST00000562258 STAP2Q9UGK3 403 aa10.6□□□□□ -0.71
VPS39-205ENST00000562258 DDX39AO00148 427 aaKnown RBP10.6□□□□□ -0.71
VPS39-205ENST00000562258 JAK2O60674 1132 aa10.6□□□□□ -0.71
VPS39-205ENST00000562258 CSF1RP07333 972 aa10.6□□□□□ -0.71
VPS39-205ENST00000562258 GNA11P29992 359 aa10.6□□□□□ -0.71
VPS39-205ENST00000562258 KIF4BQ2VIQ3 1234 aa10.6□□□□□ -0.71
VPS39-205ENST00000562258 RABL6Q3YEC7 729 aaPredicted RBP10.6□□□□□ -0.71
VPS39-205ENST00000562258 ZHX2Q9Y6X8 837 aa10.6□□□□□ -0.71
VPS39-205ENST00000562258 KLRF2D3W0D1 207 aa10.6□□□□□ -0.71
VPS39-205ENST00000562258 POLRMTO00411 1230 aaKnown RBP10.6□□□□□ -0.71
VPS39-205ENST00000562258 DDNO94850 711 aaPredicted RBP10.6□□□□□ -0.71
VPS39-205ENST00000562258 VPS54Q9P1Q0 977 aa10.6□□□□□ -0.71
VPS39-205ENST00000562258 POLLQ9UGP5 575 aa10.6□□□□□ -0.71
VPS39-205ENST00000562258 SMC2O95347 1197 aa10.59□□□□□ -0.71
VPS39-205ENST00000562258 RASA3Q14644 834 aa10.59□□□□□ -0.71
VPS39-205ENST00000562258 TRIM5Q9C035 493 aa10.59□□□□□ -0.71
VPS39-205ENST00000562258 AS3MTQ9HBK9 375 aa10.59□□□□□ -0.71
VPS39-205ENST00000562258 DISP2A7MBM2 1401 aa10.59□□□□□ -0.71
VPS39-205ENST00000562258 IPO7O95373 1038 aaKnown RBP10.59□□□□□ -0.71
VPS39-205ENST00000562258 SPP2Q13103 211 aa10.59□□□□□ -0.71
VPS39-205ENST00000562258 ZNF174Q15697 407 aa10.59□□□□□ -0.71
VPS39-205ENST00000562258 ANGEL2Q5VTE6 544 aaKnown RBP10.59□□□□□ -0.71
VPS39-205ENST00000562258 C2orf69Q8N8R5 385 aa10.59□□□□□ -0.71
VPS39-205ENST00000562258 GOPCQ9HD26 462 aa10.59□□□□□ -0.71
VPS39-205ENST00000562258 AFMP43652 599 aa10.59□□□□□ -0.71
VPS39-205ENST00000562258 STIM1Q13586 685 aa10.59□□□□□ -0.71
VPS39-205ENST00000562258 ANKRD35Q8N283 1001 aa10.59□□□□□ -0.71
VPS39-205ENST00000562258 CNNM3Q8NE01 707 aa10.59□□□□□ -0.71
VPS39-205ENST00000562258 PI4K2BQ8TCG2 481 aa10.59□□□□□ -0.71
VPS39-205ENST00000562258 CHURC1Q8WUH1 139 aa10.59□□□□□ -0.71
VPS39-205ENST00000562258 ZSCAN10Q96SZ4 725 aaPredicted RBP10.59□□□□□ -0.71
VPS39-205ENST00000562258 NAT10Q9H0A0 1025 aaKnown RBP10.59□□□□□ -0.71
VPS39-205ENST00000562258 NUP62CLQ9H1M0 184 aa10.59□□□□□ -0.71
VPS39-205ENST00000562258 GPHNQ9NQX3 736 aaPredicted RBP10.59□□□□□ -0.71
VPS39-205ENST00000562258 CCDC39Q9UFE4 941 aa10.59□□□□□ -0.71
VPS39-205ENST00000562258 IQCA1LA6NCM1 817 aa10.58□□□□□ -0.71
VPS39-205ENST00000562258 PPP4R3AQ6IN85 833 aa10.58□□□□□ -0.71
VPS39-205ENST00000562258 PIK3AP1Q6ZUJ8 805 aa10.58□□□□□ -0.71
VPS39-205ENST00000562258 CCDC84Q86UT8 332 aaPredicted RBP10.58□□□□□ -0.71
VPS39-205ENST00000562258 OTUD5Q96G74 571 aa10.58□□□□□ -0.71
VPS39-205ENST00000562258 KAZALD1Q96I82 304 aa10.58□□□□□ -0.71
VPS39-205ENST00000562258 STRBPQ96SI9 672 aaKnown RBP10.58□□□□□ -0.71
VPS39-205ENST00000562258 GGA3Q9NZ52 723 aa10.58□□□□□ -0.71
VPS39-205ENST00000562258 MCM4P33991 863 aa10.58□□□□□ -0.72
VPS39-205ENST00000562258 DNM1Q05193 864 aaKnown RBP10.58□□□□□ -0.72
VPS39-205ENST00000562258 ZFYVE27Q5T4F4 411 aa10.58□□□□□ -0.72
VPS39-205ENST00000562258 TNPO1Q92973 898 aaKnown RBP10.58□□□□□ -0.72
VPS39-205ENST00000562258 CALML4Q96GE6 196 aa10.58□□□□□ -0.72
VPS39-205ENST00000562258 PDCL3Q9H2J4 239 aa10.58□□□□□ -0.72
VPS39-205ENST00000562258 CPVLQ9H3G5 476 aa10.58□□□□□ -0.72
VPS39-205ENST00000562258 MAGEC2Q9UBF1 373 aaPredicted RBP10.58□□□□□ -0.72
VPS39-205ENST00000562258 HSPA4P34932 840 aa10.58□□□□□ -0.72
VPS39-205ENST00000562258 IREB2P48200 963 aaKnown RBP10.58□□□□□ -0.72
VPS39-205ENST00000562258 USP17L2Q6R6M4 530 aa10.58□□□□□ -0.72
VPS39-205ENST00000562258 ZNF341Q9BYN7 854 aa10.58□□□□□ -0.72
VPS39-205ENST00000562258 LMNB1P20700 586 aa10.58□□□□□ -0.72
VPS39-205ENST00000562258 ARID4AP29374 1257 aaPredicted RBP10.58□□□□□ -0.72
VPS39-205ENST00000562258 SNAP25P60880 206 aa10.58□□□□□ -0.72
VPS39-205ENST00000562258 ATP10DQ9P241 1426 aa10.57□□□□□ -0.72
VPS39-205ENST00000562258 NAP1L1P55209 391 aaKnown RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms