RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 ARID4AP29374 1257 aaPredicted RBP23.39■■□□□ 1.33
VPS35-202ENST00000561713 ERICH6Q7L0X2 663 aa23.39■■□□□ 1.33
VPS35-202ENST00000561713 SPATA5Q8NB90 893 aa23.39■■□□□ 1.33
VPS35-202ENST00000561713 SLC45A1Q9Y2W3 748 aa23.39■■□□□ 1.33
VPS35-202ENST00000561713 LAMA3Q16787 3333 aa23.39■■□□□ 1.33
VPS35-202ENST00000561713 ZBTB22O15209 634 aa23.38■■□□□ 1.33
VPS35-202ENST00000561713 CTNND1O60716 968 aaKnown RBP23.38■■□□□ 1.33
VPS35-202ENST00000561713 SGPL1O95470 568 aa23.38■■□□□ 1.33
VPS35-202ENST00000561713 OS9Q13438 667 aaPredicted RBP23.38■■□□□ 1.33
VPS35-202ENST00000561713 POLA2Q14181 598 aa23.38■■□□□ 1.33
VPS35-202ENST00000561713 SPTY2D1Q68D10 685 aaPredicted RBP23.38■■□□□ 1.33
VPS35-202ENST00000561713 CCDC84Q86UT8 332 aaPredicted RBP23.38■■□□□ 1.33
VPS35-202ENST00000561713 PRO3102Q9H379 93 aa23.38■■□□□ 1.33
VPS35-202ENST00000561713 ZBED9Q6R2W3 1325 aa23.37■■□□□ 1.33
VPS35-202ENST00000561713 TNPO2O14787 897 aaKnown RBP23.37■■□□□ 1.33
VPS35-202ENST00000561713 INHAP05111 366 aa23.37■■□□□ 1.33
VPS35-202ENST00000561713 SMCR8Q8TEV9 937 aaPredicted RBP23.37■■□□□ 1.33
VPS35-202ENST00000561713 FAM163AQ96GL9 167 aaPredicted RBP23.37■■□□□ 1.33
VPS35-202ENST00000561713 DBNDD2Q9BQY9 259 aa23.37■■□□□ 1.33
VPS35-202ENST00000561713 SNRKQ9NRH2 765 aa23.37■■□□□ 1.33
VPS35-202ENST00000561713 RAI14Q9P0K7 980 aa23.37■■□□□ 1.33
VPS35-202ENST00000561713 NR2E3Q9Y5X4 410 aa23.37■■□□□ 1.33
VPS35-202ENST00000561713 FAM196BA6NMK8 535 aa23.36■■□□□ 1.33
VPS35-202ENST00000561713 RHBDL3P58872 404 aa23.36■■□□□ 1.33
VPS35-202ENST00000561713 TNNI3KQ59H18 835 aa23.36■■□□□ 1.33
VPS35-202ENST00000561713 FPGT-TNNI3KV9GXZ4 949 aa23.36■■□□□ 1.33
VPS35-202ENST00000561713 ZBTB7BO15156 539 aaPredicted RBP23.35■■□□□ 1.33
VPS35-202ENST00000561713 TREML2Q5T2D2 321 aa23.35■■□□□ 1.33
VPS35-202ENST00000561713 SLF2Q8IX21 1173 aa23.35■■□□□ 1.33
VPS35-202ENST00000561713 ANKRD13CQ8N6S4 541 aa23.35■■□□□ 1.33
VPS35-202ENST00000561713 SSH3Q8TE77 659 aa23.35■■□□□ 1.33
VPS35-202ENST00000561713 PXYLP1Q8TE99 480 aa23.35■■□□□ 1.33
VPS35-202ENST00000561713 NSUN4Q96CB9 384 aaKnown RBP23.35■■□□□ 1.33
VPS35-202ENST00000561713 DEFB118Q96PH6 123 aa23.35■■□□□ 1.33
VPS35-202ENST00000561713 TLR7Q9NYK1 1049 aaKnown RBP23.35■■□□□ 1.33
VPS35-202ENST00000561713 SURF6O75683 361 aaKnown RBP23.34■■□□□ 1.33
VPS35-202ENST00000561713 TFRCP02786 760 aaKnown RBP23.34■■□□□ 1.33
VPS35-202ENST00000561713 IRF5Q13568 498 aa23.34■■□□□ 1.33
VPS35-202ENST00000561713 PANK1Q8TE04 598 aa23.34■■□□□ 1.33
VPS35-202ENST00000561713 TAOK2Q9UL54 1235 aa23.34■■□□□ 1.33
VPS35-202ENST00000561713 AGTPBP1Q9UPW5 1226 aa23.34■■□□□ 1.33
VPS35-202ENST00000561713 LOC285556D6RIA3 1793 aa23.34■■□□□ 1.33
VPS35-202ENST00000561713 COL6A3P12111 3177 aa23.33■■□□□ 1.33
VPS35-202ENST00000561713 GPR75-ASB3A0A0A6YYF3 556 aa23.33■■□□□ 1.33
VPS35-202ENST00000561713 ATP8B2P98198 1209 aa23.33■■□□□ 1.33
VPS35-202ENST00000561713 TTC39AQ5SRH9 613 aa23.33■■□□□ 1.33
VPS35-202ENST00000561713 UQCRFS1P1P0C7P4 283 aa23.32■■□□□ 1.32
VPS35-202ENST00000561713 PAK6Q9NQU5 681 aaPredicted RBP23.32■■□□□ 1.32
VPS35-202ENST00000561713 MYH1P12882 1939 aa23.31■■□□□ 1.32
VPS35-202ENST00000561713 TBC1D12O60347 775 aa23.31■■□□□ 1.32
VPS35-202ENST00000561713 EVI5O60447 810 aa23.31■■□□□ 1.32
VPS35-202ENST00000561713 COA7Q96BR5 231 aa23.31■■□□□ 1.32
VPS35-202ENST00000561713 LRP2BPQ9P2M1 347 aa23.31■■□□□ 1.32
VPS35-202ENST00000561713 GSTO1P78417 241 aa23.3■■□□□ 1.32
VPS35-202ENST00000561713 SH3RF3Q8TEJ3 882 aaPredicted RBP23.3■■□□□ 1.32
VPS35-202ENST00000561713 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.3■■□□□ 1.32
VPS35-202ENST00000561713 DBNLQ9UJU6 430 aaKnown RBP23.3■■□□□ 1.32
VPS35-202ENST00000561713 COL2A1P02458 1487 aaPredicted RBP23.3■■□□□ 1.32
VPS35-202ENST00000561713 SPP2Q13103 211 aa23.29■■□□□ 1.32
VPS35-202ENST00000561713 FAM110CQ1W6H9 321 aa23.29■■□□□ 1.32
VPS35-202ENST00000561713 CEP85Q6P2H3 762 aa23.29■■□□□ 1.32
VPS35-202ENST00000561713 ADGRA1Q86SQ6 560 aa23.29■■□□□ 1.32
VPS35-202ENST00000561713 TEX11Q8IYF3 940 aa23.29■■□□□ 1.32
VPS35-202ENST00000561713 PAWRQ96IZ0 340 aaKnown RBP23.29■■□□□ 1.32
VPS35-202ENST00000561713 CRISPLD2Q9H0B8 497 aa23.29■■□□□ 1.32
VPS35-202ENST00000561713 CCDC8Q9H0W5 538 aaPredicted RBP23.29■■□□□ 1.32
VPS35-202ENST00000561713 GPR108Q9NPR9 543 aa23.29■■□□□ 1.32
VPS35-202ENST00000561713 DOCK3Q8IZD9 2030 aa23.28■■□□□ 1.32
VPS35-202ENST00000561713 PROCA1Q8NCQ7 364 aaPredicted RBP23.28■■□□□ 1.32
VPS35-202ENST00000561713 OSBPL5Q9H0X9 879 aaPredicted RBP23.28■■□□□ 1.32
VPS35-202ENST00000561713 AATFQ9NY61 560 aaKnown RBP eCLIP23.28■■□□□ 1.32
VPS35-202ENST00000561713 PNMA3Q9UL41 463 aa23.28■■□□□ 1.32
VPS35-202ENST00000561713 EXOC6BQ9Y2D4 811 aa23.28■■□□□ 1.32
VPS35-202ENST00000561713 NPM3O75607 178 aaKnown RBP23.27■■□□□ 1.32
VPS35-202ENST00000561713 CYP2E1P05181 493 aaPredicted RBP23.27■■□□□ 1.32
VPS35-202ENST00000561713 LDHCP07864 332 aa23.27■■□□□ 1.32
VPS35-202ENST00000561713 ZAP70P43403 619 aa23.27■■□□□ 1.32
VPS35-202ENST00000561713 RRP1BQ14684 758 aaKnown RBP23.27■■□□□ 1.32
VPS35-202ENST00000561713 NAA16Q6N069 864 aaPredicted RBP23.27■■□□□ 1.32
VPS35-202ENST00000561713 ZNF280CQ8ND82 737 aa23.27■■□□□ 1.32
VPS35-202ENST00000561713 DIS3LQ8TF46 1054 aaKnown RBP23.27■■□□□ 1.32
VPS35-202ENST00000561713 PIH1D3Q9NQM4 214 aaKnown RBP23.27■■□□□ 1.32
VPS35-202ENST00000561713 STAP2Q9UGK3 403 aa23.27■■□□□ 1.32
VPS35-202ENST00000561713 NDUFB9Q9Y6M9 179 aa23.27■■□□□ 1.32
VPS35-202ENST00000561713 A0A0C4DFX4 3053 aa23.27■■□□□ 1.32
VPS35-202ENST00000561713 NAV1Q8NEY1 1877 aa23.26■■□□□ 1.31
VPS35-202ENST00000561713 SOX1O00570 391 aaPredicted RBP23.26■■□□□ 1.31
VPS35-202ENST00000561713 CAPN2P17655 700 aa23.26■■□□□ 1.31
VPS35-202ENST00000561713 HMGCS2P54868 508 aa23.26■■□□□ 1.31
VPS35-202ENST00000561713 CCDC158Q5M9N0 1113 aa23.26■■□□□ 1.31
VPS35-202ENST00000561713 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.26■■□□□ 1.31
VPS35-202ENST00000561713 NOP58Q9Y2X3 529 aaKnown RBP23.26■■□□□ 1.31
VPS35-202ENST00000561713 EAF2Q96CJ1 260 aaPredicted RBP23.25■■□□□ 1.31
VPS35-202ENST00000561713 DDX60LQ5H9U9 1706 aaKnown RBP23.25■■□□□ 1.31
VPS35-202ENST00000561713 A0A1W2PPC1 479 aa23.24■■□□□ 1.31
VPS35-202ENST00000561713 CAP2P40123 477 aa23.24■■□□□ 1.31
VPS35-202ENST00000561713 GCLCP48506 637 aaPredicted RBP23.24■■□□□ 1.31
VPS35-202ENST00000561713 NECAB2Q7Z6G3 386 aa23.24■■□□□ 1.31
VPS35-202ENST00000561713 MAPKAPK5Q8IW41 473 aa23.24■■□□□ 1.31
VPS35-202ENST00000561713 NOL10Q9BSC4 688 aaKnown RBP23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms