RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 HNRNPUQ00839 825 aaKnown RBP eCLIP14.33□□□□□ -0.12
USP3-220ENST00000561381 GADL1Q6ZQY3 521 aa14.33□□□□□ -0.12
USP3-220ENST00000561381 SNRKQ9NRH2 765 aa14.33□□□□□ -0.12
USP3-220ENST00000561381 SRRDQ9UH36 339 aa14.33□□□□□ -0.12
USP3-220ENST00000561381 PHIPQ8WWQ0 1821 aa14.32□□□□□ -0.12
USP3-220ENST00000561381 DOCK1Q14185 1865 aa14.32□□□□□ -0.12
USP3-220ENST00000561381 TRIM75PA6NK02 468 aa14.32□□□□□ -0.12
USP3-220ENST00000561381 UQCRFS1P1P0C7P4 283 aa14.32□□□□□ -0.12
USP3-220ENST00000561381 RLBP1P12271 317 aa14.32□□□□□ -0.12
USP3-220ENST00000561381 PRMT2P55345 433 aa14.32□□□□□ -0.12
USP3-220ENST00000561381 GSTO1P78417 241 aa14.32□□□□□ -0.12
USP3-220ENST00000561381 ATP8B2P98198 1209 aa14.32□□□□□ -0.12
USP3-220ENST00000561381 MTFR1Q15390 333 aa14.32□□□□□ -0.12
USP3-220ENST00000561381 TNNI3KQ59H18 835 aa14.32□□□□□ -0.12
USP3-220ENST00000561381 FASTKD5Q7L8L6 764 aaKnown RBP14.32□□□□□ -0.12
USP3-220ENST00000561381 DBNDD2Q9BQY9 259 aa14.32□□□□□ -0.12
USP3-220ENST00000561381 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.32□□□□□ -0.12
USP3-220ENST00000561381 LRP2BPQ9P2M1 347 aa14.32□□□□□ -0.12
USP3-220ENST00000561381 FPGT-TNNI3KV9GXZ4 949 aa14.32□□□□□ -0.12
USP3-220ENST00000561381 PTPRFP10586 1907 aa14.32□□□□□ -0.12
USP3-220ENST00000561381 TBC1D12O60347 775 aa14.31□□□□□ -0.12
USP3-220ENST00000561381 SURF6O75683 361 aaKnown RBP14.31□□□□□ -0.12
USP3-220ENST00000561381 LDHCP07864 332 aa14.31□□□□□ -0.12
USP3-220ENST00000561381 RRP1BQ14684 758 aaKnown RBP14.31□□□□□ -0.12
USP3-220ENST00000561381 SSH3Q8TE77 659 aa14.31□□□□□ -0.12
USP3-220ENST00000561381 SH3RF3Q8TEJ3 882 aaPredicted RBP14.31□□□□□ -0.12
USP3-220ENST00000561381 OSBPL5Q9H0X9 879 aaPredicted RBP14.31□□□□□ -0.12
USP3-220ENST00000561381 MYPNQ86TC9 1320 aa14.31□□□□□ -0.12
USP3-220ENST00000561381 HOXD10P28358 340 aa14.3□□□□□ -0.12
USP3-220ENST00000561381 PRKCZQ05513 592 aa14.3□□□□□ -0.12
USP3-220ENST00000561381 OS9Q13438 667 aaPredicted RBP14.3□□□□□ -0.12
USP3-220ENST00000561381 TTC39AQ5SRH9 613 aa14.3□□□□□ -0.12
USP3-220ENST00000561381 ADGRA1Q86SQ6 560 aa14.3□□□□□ -0.12
USP3-220ENST00000561381 ITPRIPQ8IWB1 547 aa14.3□□□□□ -0.12
USP3-220ENST00000561381 TEX11Q8IYF3 940 aa14.3□□□□□ -0.12
USP3-220ENST00000561381 RAET1EQ8TD07 263 aa14.3□□□□□ -0.12
USP3-220ENST00000561381 GPR108Q9NPR9 543 aa14.3□□□□□ -0.12
USP3-220ENST00000561381 GABRQQ9UN88 632 aa14.3□□□□□ -0.12
USP3-220ENST00000561381 POTEB2H3BUK9 544 aa14.29□□□□□ -0.12
USP3-220ENST00000561381 CYP2E1P05181 493 aaPredicted RBP14.29□□□□□ -0.12
USP3-220ENST00000561381 GRK4P32298 578 aa14.29□□□□□ -0.12
USP3-220ENST00000561381 FCGRTP55899 365 aa14.29□□□□□ -0.12
USP3-220ENST00000561381 TREML2Q5T2D2 321 aa14.29□□□□□ -0.12
USP3-220ENST00000561381 NAA16Q6N069 864 aaPredicted RBP14.29□□□□□ -0.12
USP3-220ENST00000561381 FTSJ3Q8IY81 847 aaKnown RBP14.29□□□□□ -0.12
USP3-220ENST00000561381 SHISA4Q96DD7 197 aa14.29□□□□□ -0.12
USP3-220ENST00000561381 AATFQ9NY61 560 aaKnown RBP eCLIP14.29□□□□□ -0.12
USP3-220ENST00000561381 TLR7Q9NYK1 1049 aaKnown RBP14.29□□□□□ -0.12
USP3-220ENST00000561381 ZBTB7BO15156 539 aaPredicted RBP14.28□□□□□ -0.12
USP3-220ENST00000561381 MGAMO43451 1857 aa14.28□□□□□ -0.12
USP3-220ENST00000561381 MAP4K4O95819 1239 aaPredicted RBP14.28□□□□□ -0.12
USP3-220ENST00000561381 COL2A1P02458 1487 aaPredicted RBP14.28□□□□□ -0.12
USP3-220ENST00000561381 ZAP70P43403 619 aa14.28□□□□□ -0.12
USP3-220ENST00000561381 SPP2Q13103 211 aa14.28□□□□□ -0.12
USP3-220ENST00000561381 CCDC158Q5M9N0 1113 aa14.28□□□□□ -0.12
USP3-220ENST00000561381 SMCR8Q8TEV9 937 aaPredicted RBP14.28□□□□□ -0.12
USP3-220ENST00000561381 PIH1D3Q9NQM4 214 aaKnown RBP14.28□□□□□ -0.12
USP3-220ENST00000561381 DBNLQ9UJU6 430 aaKnown RBP14.28□□□□□ -0.12
USP3-220ENST00000561381 AGTPBP1Q9UPW5 1226 aa14.28□□□□□ -0.12
USP3-220ENST00000561381 SLC45A1Q9Y2W3 748 aa14.28□□□□□ -0.12
USP3-220ENST00000561381 NOP58Q9Y2X3 529 aaKnown RBP14.28□□□□□ -0.12
USP3-220ENST00000561381 MYO5AQ9Y4I1 1855 aaKnown RBP14.28□□□□□ -0.12
USP3-220ENST00000561381 CAP2P40123 477 aa14.27□□□□□ -0.13
USP3-220ENST00000561381 MAPKAPK5Q8IW41 473 aa14.27□□□□□ -0.13
USP3-220ENST00000561381 ANKRD13CQ8N6S4 541 aa14.27□□□□□ -0.13
USP3-220ENST00000561381 TGFBRAP1Q8WUH2 860 aa14.27□□□□□ -0.13
USP3-220ENST00000561381 CCDC8Q9H0W5 538 aaPredicted RBP14.27□□□□□ -0.13
USP3-220ENST00000561381 BIN2Q9UBW5 565 aaPredicted RBP14.27□□□□□ -0.13
USP3-220ENST00000561381 SIPA1L1O43166 1804 aa14.27□□□□□ -0.13
USP3-220ENST00000561381 CCL5P13501 91 aa14.26□□□□□ -0.13
USP3-220ENST00000561381 FLT3LGP49771 235 aa14.26□□□□□ -0.13
USP3-220ENST00000561381 HMGCS2P54868 508 aa14.26□□□□□ -0.13
USP3-220ENST00000561381 JAG1P78504 1218 aa14.26□□□□□ -0.13
USP3-220ENST00000561381 SHROOM1Q2M3G4 852 aaPredicted RBP14.26□□□□□ -0.13
USP3-220ENST00000561381 HABP4Q5JVS0 413 aaKnown RBP14.26□□□□□ -0.13
USP3-220ENST00000561381 PLCD3Q8N3E9 789 aa14.26□□□□□ -0.13
USP3-220ENST00000561381 ZNF280CQ8ND82 737 aa14.26□□□□□ -0.13
USP3-220ENST00000561381 EAF2Q96CJ1 260 aaPredicted RBP14.26□□□□□ -0.13
USP3-220ENST00000561381 NOL10Q9BSC4 688 aaKnown RBP14.26□□□□□ -0.13
USP3-220ENST00000561381 TSPYL2Q9H2G4 693 aaPredicted RBP14.26□□□□□ -0.13
USP3-220ENST00000561381 DNAJC18Q9H819 358 aa14.26□□□□□ -0.13
USP3-220ENST00000561381 NDUFB9Q9Y6M9 179 aa14.26□□□□□ -0.13
USP3-220ENST00000561381 ATAD5Q96QE3 1844 aa14.26□□□□□ -0.13
USP3-220ENST00000561381 DOCK3Q8IZD9 2030 aa14.25□□□□□ -0.13
USP3-220ENST00000561381 MAST2Q6P0Q8 1798 aa14.25□□□□□ -0.13
USP3-220ENST00000561381 FLT1P17948 1338 aa14.25□□□□□ -0.13
USP3-220ENST00000561381 BAG3O95817 575 aa14.25□□□□□ -0.13
USP3-220ENST00000561381 ELNP15502 786 aa14.25□□□□□ -0.13
USP3-220ENST00000561381 PPP4CP60510 307 aa14.25□□□□□ -0.13
USP3-220ENST00000561381 DYNLL1P63167 89 aaKnown RBP14.25□□□□□ -0.13
USP3-220ENST00000561381 CEP85Q6P2H3 762 aa14.25□□□□□ -0.13
USP3-220ENST00000561381 PANK1Q8TE04 598 aa14.25□□□□□ -0.13
USP3-220ENST00000561381 GCC1Q96CN9 775 aa14.25□□□□□ -0.13
USP3-220ENST00000561381 ZNF512BQ96KM6 892 aaPredicted RBP14.25□□□□□ -0.13
USP3-220ENST00000561381 RNF208Q9H0X6 261 aa14.25□□□□□ -0.13
USP3-220ENST00000561381 PI4KBQ9UBF8 816 aa14.25□□□□□ -0.13
USP3-220ENST00000561381 HERC5Q9UII4 1024 aaKnown RBP14.25□□□□□ -0.13
USP3-220ENST00000561381 PALD1Q9ULE6 856 aa14.25□□□□□ -0.13
USP3-220ENST00000561381 CDK5RAP2Q96SN8 1893 aa14.25□□□□□ -0.13
USP3-220ENST00000561381 USP17L5A8MUK1 530 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms