RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 PCDHGC5Q9Y5F6 944 aa7.7□□□□□ -1.18
VPS13C-210ENST00000561258 HCLS1P14317 486 aaPredicted RBP7.69□□□□□ -1.18
VPS13C-210ENST00000561258 GNA15P30679 374 aa7.69□□□□□ -1.18
VPS13C-210ENST00000561258 LCE4AQ5TA78 99 aa7.69□□□□□ -1.18
VPS13C-210ENST00000561258 PRPF40BQ6NWY9 871 aaKnown RBP7.69□□□□□ -1.18
VPS13C-210ENST00000561258 VAV3Q9UKW4 847 aa7.69□□□□□ -1.18
VPS13C-210ENST00000561258 EIF1AYO14602 144 aaKnown RBP7.68□□□□□ -1.18
VPS13C-210ENST00000561258 GSTP1P09211 210 aaKnown RBP7.68□□□□□ -1.18
VPS13C-210ENST00000561258 PRKCQQ04759 706 aa7.68□□□□□ -1.18
VPS13C-210ENST00000561258 AOC3Q16853 763 aa7.68□□□□□ -1.18
VPS13C-210ENST00000561258 KIF4BQ2VIQ3 1234 aa7.68□□□□□ -1.18
VPS13C-210ENST00000561258 RPS26P11Q5JNZ5 115 aaPredicted RBP7.68□□□□□ -1.18
VPS13C-210ENST00000561258 LRRN4CLQ8ND94 238 aa7.68□□□□□ -1.18
VPS13C-210ENST00000561258 PI4K2BQ8TCG2 481 aa7.68□□□□□ -1.18
VPS13C-210ENST00000561258 RNF34Q969K3 372 aa7.68□□□□□ -1.18
VPS13C-210ENST00000561258 ZNF76P36508 570 aa7.67□□□□□ -1.18
VPS13C-210ENST00000561258 GRM2Q14416 872 aa7.67□□□□□ -1.18
VPS13C-210ENST00000561258 TINF2Q9BSI4 451 aa7.67□□□□□ -1.18
VPS13C-210ENST00000561258 DUSP23Q9BVJ7 150 aa7.67□□□□□ -1.18
VPS13C-210ENST00000561258 KRTAP4-9Q9BYQ8 210 aa7.67□□□□□ -1.18
VPS13C-210ENST00000561258 TGIF2Q9GZN2 237 aa7.67□□□□□ -1.18
VPS13C-210ENST00000561258 PLAGL2Q9UPG8 496 aa7.67□□□□□ -1.18
VPS13C-210ENST00000561258 FARP2O94887 1054 aaPredicted RBP7.66□□□□□ -1.18
VPS13C-210ENST00000561258 NEFMP07197 916 aa7.66□□□□□ -1.18
VPS13C-210ENST00000561258 CTSHP09668 335 aa7.66□□□□□ -1.18
VPS13C-210ENST00000561258 OXCT1P55809 520 aa7.66□□□□□ -1.18
VPS13C-210ENST00000561258 IFI16Q16666 785 aaKnown RBP7.66□□□□□ -1.18
VPS13C-210ENST00000561258 ARHGAP27Q6ZUM4 889 aa7.66□□□□□ -1.18
VPS13C-210ENST00000561258 EPS8L3Q8TE67 593 aaKnown RBP7.66□□□□□ -1.18
VPS13C-210ENST00000561258 CRELD1Q96HD1 420 aa7.66□□□□□ -1.18
VPS13C-210ENST00000561258 FRMD6Q96NE9 622 aa7.66□□□□□ -1.18
VPS13C-210ENST00000561258 DNAJC25Q9H1X3 360 aa7.66□□□□□ -1.18
VPS13C-210ENST00000561258 KRT82Q9NSB4 513 aa7.66□□□□□ -1.18
VPS13C-210ENST00000561258 PCOLCE2Q9UKZ9 415 aa7.66□□□□□ -1.18
VPS13C-210ENST00000561258 AK5Q9Y6K8 562 aa7.66□□□□□ -1.18
VPS13C-210ENST00000561258 DBX1A6NMT0 343 aa7.65□□□□□ -1.18
VPS13C-210ENST00000561258 CEACAM5P06731 702 aa7.65□□□□□ -1.18
VPS13C-210ENST00000561258 PDZD3Q86UT5 571 aa7.65□□□□□ -1.18
VPS13C-210ENST00000561258 STK35Q8TDR2 534 aa7.65□□□□□ -1.18
VPS13C-210ENST00000561258 KCNB2Q92953 911 aa7.65□□□□□ -1.18
VPS13C-210ENST00000561258 HRASLS5Q96KN8 279 aa7.65□□□□□ -1.18
VPS13C-210ENST00000561258 GPN3Q9UHW5 284 aaPredicted RBP7.65□□□□□ -1.18
VPS13C-210ENST00000561258 ITIH2P19823 946 aa7.64□□□□□ -1.19
VPS13C-210ENST00000561258 FCGRTP55899 365 aa7.64□□□□□ -1.19
VPS13C-210ENST00000561258 FAM177A1Q8N128 213 aaPredicted RBP7.64□□□□□ -1.19
VPS13C-210ENST00000561258 TOP6BLQ8N6T0 577 aa7.64□□□□□ -1.19
VPS13C-210ENST00000561258 TMEM40Q8WWA1 233 aa7.64□□□□□ -1.19
VPS13C-210ENST00000561258 ISL2Q96A47 359 aa7.64□□□□□ -1.19
VPS13C-210ENST00000561258 MKNK2Q9HBH9 465 aa7.64□□□□□ -1.19
VPS13C-210ENST00000561258 PRDM7Q9NQW5 492 aa7.64□□□□□ -1.19
VPS13C-210ENST00000561258 PPP1R1BQ9UD71 204 aaPredicted RBP7.64□□□□□ -1.19
VPS13C-210ENST00000561258 TRAK1Q9UPV9 953 aa7.64□□□□□ -1.19
VPS13C-210ENST00000561258 DTHD1Q6ZMT9 781 aa7.63□□□□□ -1.19
VPS13C-210ENST00000561258 SLC43A3Q8NBI5 491 aa7.63□□□□□ -1.19
VPS13C-210ENST00000561258 CCSER2Q9H7U1 834 aa7.63□□□□□ -1.19
VPS13C-210ENST00000561258 SSU72Q9NP77 194 aaKnown RBP7.63□□□□□ -1.19
VPS13C-210ENST00000561258 TMEM39AQ9NV64 488 aa7.63□□□□□ -1.19
VPS13C-210ENST00000561258 TMEM265A0A087WTH1 108 aa7.62□□□□□ -1.19
VPS13C-210ENST00000561258 PI16Q6UXB8 463 aa7.62□□□□□ -1.19
VPS13C-210ENST00000561258 SPOCD1Q6ZMY3 1216 aa7.62□□□□□ -1.19
VPS13C-210ENST00000561258 KSR1Q8IVT5 923 aa7.62□□□□□ -1.19
VPS13C-210ENST00000561258 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.62□□□□□ -1.19
VPS13C-210ENST00000561258 HEXIM2Q96MH2 286 aaKnown RBP7.62□□□□□ -1.19
VPS13C-210ENST00000561258 ACBD3Q9H3P7 528 aa7.62□□□□□ -1.19
VPS13C-210ENST00000561258 SPG7Q9UQ90 795 aa7.62□□□□□ -1.19
VPS13C-210ENST00000561258 PPP2R3AQ06190 1150 aa7.61□□□□□ -1.19
VPS13C-210ENST00000561258 ANGEL2Q5VTE6 544 aaKnown RBP7.61□□□□□ -1.19
VPS13C-210ENST00000561258 PUS7Q96PZ0 661 aaKnown RBP7.61□□□□□ -1.19
VPS13C-210ENST00000561258 EIF4BP23588 611 aaKnown RBP7.6□□□□□ -1.19
VPS13C-210ENST00000561258 PKN1Q16512 942 aa7.6□□□□□ -1.19
VPS13C-210ENST00000561258 FBLN7Q53RD9 439 aa7.6□□□□□ -1.19
VPS13C-210ENST00000561258 ZC3H12AQ5D1E8 599 aaKnown RBP7.6□□□□□ -1.19
VPS13C-210ENST00000561258 SULF2Q8IWU5 870 aa7.6□□□□□ -1.19
VPS13C-210ENST00000561258 TANGO6Q9C0B7 1094 aa7.6□□□□□ -1.19
VPS13C-210ENST00000561258 TNKS2Q9H2K2 1166 aa7.6□□□□□ -1.19
VPS13C-210ENST00000561258 CAPN10Q9HC96 672 aa7.6□□□□□ -1.19
VPS13C-210ENST00000561258 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.6□□□□□ -1.19
VPS13C-210ENST00000561258 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.6□□□□□ -1.19
VPS13C-210ENST00000561258 TNNI2P48788 182 aa7.59□□□□□ -1.19
VPS13C-210ENST00000561258 HNRNPUQ00839 825 aaKnown RBP eCLIP7.59□□□□□ -1.19
VPS13C-210ENST00000561258 MESP2Q0VG99 397 aa7.59□□□□□ -1.19
VPS13C-210ENST00000561258 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.59□□□□□ -1.19
VPS13C-210ENST00000561258 MAP1SQ66K74 1059 aaPredicted RBP7.59□□□□□ -1.19
VPS13C-210ENST00000561258 SLC23A3Q6PIS1 610 aa7.59□□□□□ -1.19
VPS13C-210ENST00000561258 MPRIPQ6WCQ1 1025 aa7.59□□□□□ -1.19
VPS13C-210ENST00000561258 FAM214BQ7L5A3 538 aa7.59□□□□□ -1.19
VPS13C-210ENST00000561258 RNF214Q8ND24 703 aa7.59□□□□□ -1.19
VPS13C-210ENST00000561258 GPBAR1Q8TDU6 330 aa7.59□□□□□ -1.19
VPS13C-210ENST00000561258 C12orf49Q9H741 205 aa7.59□□□□□ -1.19
VPS13C-210ENST00000561258 NLRP2Q9NX02 1062 aa7.59□□□□□ -1.19
VPS13C-210ENST00000561258 DDX41Q9UJV9 622 aaKnown RBP7.59□□□□□ -1.19
VPS13C-210ENST00000561258 GIPC1O14908 333 aa7.58□□□□□ -1.2
VPS13C-210ENST00000561258 ARNTP27540 789 aa7.58□□□□□ -1.2
VPS13C-210ENST00000561258 ERVK-24P63145 666 aa7.58□□□□□ -1.2
VPS13C-210ENST00000561258 GMLQ99445 158 aa7.58□□□□□ -1.2
VPS13C-210ENST00000561258 SLC38A3Q99624 504 aa7.58□□□□□ -1.2
VPS13C-210ENST00000561258 BCO2Q9BYV7 579 aa7.58□□□□□ -1.2
VPS13C-210ENST00000561258 OSBPL7Q9BZF2 842 aa7.58□□□□□ -1.2
VPS13C-210ENST00000561258 SNX11Q9Y5W9 270 aa7.58□□□□□ -1.2
VPS13C-210ENST00000561258 CSADQ9Y600 493 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms