RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 PLCD1P51178 756 aa13.32□□□□□ -0.28
SNX1-212ENST00000560861 ZNF280AP59817 542 aaPredicted RBP13.32□□□□□ -0.28
SNX1-212ENST00000560861 APOBRQ0VD83 1088 aa13.32□□□□□ -0.28
SNX1-212ENST00000560861 NFIAQ12857 509 aa13.32□□□□□ -0.28
SNX1-212ENST00000560861 ZNF274Q96GC6 653 aaPredicted RBP13.32□□□□□ -0.28
SNX1-212ENST00000560861 PRMT6Q96LA8 375 aaPredicted RBP13.32□□□□□ -0.28
SNX1-212ENST00000560861 SENP2Q9HC62 589 aa13.32□□□□□ -0.28
SNX1-212ENST00000560861 FOXD4L1Q9NU39 408 aa13.32□□□□□ -0.28
SNX1-212ENST00000560861 FAM198AQ9UFP1 575 aa13.32□□□□□ -0.28
SNX1-212ENST00000560861 SAP30BPQ9UHR5 308 aaKnown RBP13.32□□□□□ -0.28
SNX1-212ENST00000560861 BRPF3Q9ULD4 1205 aa13.32□□□□□ -0.28
SNX1-212ENST00000560861 ZBTB12Q9Y330 459 aaPredicted RBP13.32□□□□□ -0.28
SNX1-212ENST00000560861 NID2Q14112 1375 aa13.32□□□□□ -0.28
SNX1-212ENST00000560861 SPDYE2BA6NHP3 402 aa13.31□□□□□ -0.28
SNX1-212ENST00000560861 SPDYE6P0CI01 402 aa13.31□□□□□ -0.28
SNX1-212ENST00000560861 RPS12P25398 132 aaKnown RBP13.31□□□□□ -0.28
SNX1-212ENST00000560861 LIFRP42702 1097 aa13.31□□□□□ -0.28
SNX1-212ENST00000560861 MMP14P50281 582 aa13.31□□□□□ -0.28
SNX1-212ENST00000560861 GABPAQ06546 454 aa13.31□□□□□ -0.28
SNX1-212ENST00000560861 TNIP1Q15025 636 aa13.31□□□□□ -0.28
SNX1-212ENST00000560861 SEC23AQ15436 765 aa13.31□□□□□ -0.28
SNX1-212ENST00000560861 C16orf86Q6ZW13 317 aa13.31□□□□□ -0.28
SNX1-212ENST00000560861 SGMS1Q86VZ5 419 aa13.31□□□□□ -0.28
SNX1-212ENST00000560861 ESR2Q92731 530 aa13.31□□□□□ -0.28
SNX1-212ENST00000560861 GTF3C6Q969F1 213 aa13.31□□□□□ -0.28
SNX1-212ENST00000560861 DYNLL2Q96FJ2 89 aa13.31□□□□□ -0.28
SNX1-212ENST00000560861 OSBPL5Q9H0X9 879 aaPredicted RBP13.31□□□□□ -0.28
SNX1-212ENST00000560861 LY9Q9HBG7 655 aa13.31□□□□□ -0.28
SNX1-212ENST00000560861 CWC22Q9HCG8 908 aaKnown RBP13.31□□□□□ -0.28
SNX1-212ENST00000560861 CHMP5Q9NZZ3 219 aa13.31□□□□□ -0.28
SNX1-212ENST00000560861 ANGEL1Q9UNK9 670 aaKnown RBP13.31□□□□□ -0.28
SNX1-212ENST00000560861 HPS5Q9UPZ3 1129 aa13.31□□□□□ -0.28
SNX1-212ENST00000560861 ZNF541Q9H0D2 1346 aa13.31□□□□□ -0.28
SNX1-212ENST00000560861 ATRNL1Q5VV63 1379 aa13.31□□□□□ -0.28
SNX1-212ENST00000560861 SLC3A2P08195 630 aaKnown RBP13.3□□□□□ -0.28
SNX1-212ENST00000560861 PDIA3P30101 505 aaKnown RBP13.3□□□□□ -0.28
SNX1-212ENST00000560861 CCDC83Q8IWF9 413 aa13.3□□□□□ -0.28
SNX1-212ENST00000560861 ZFPM1Q8IX07 1006 aa13.3□□□□□ -0.28
SNX1-212ENST00000560861 NECAB1Q8N987 351 aa13.3□□□□□ -0.28
SNX1-212ENST00000560861 SHTN1A0MZ66 631 aa13.29□□□□□ -0.28
SNX1-212ENST00000560861 ENTPD3O75355 529 aa13.29□□□□□ -0.28
SNX1-212ENST00000560861 PRDM1O75626 825 aa13.29□□□□□ -0.28
SNX1-212ENST00000560861 POLR3DP05423 398 aaPredicted RBP13.29□□□□□ -0.28
SNX1-212ENST00000560861 LMNB1P20700 586 aa13.29□□□□□ -0.28
SNX1-212ENST00000560861 RASA1P20936 1047 aa13.29□□□□□ -0.28
SNX1-212ENST00000560861 SCRN1Q12765 414 aa13.29□□□□□ -0.28
SNX1-212ENST00000560861 SPDYE2Q495Y8 402 aa13.29□□□□□ -0.28
SNX1-212ENST00000560861 ARHGAP27Q6ZUM4 889 aa13.29□□□□□ -0.28
SNX1-212ENST00000560861 SH3BP5LQ7L8J4 393 aa13.29□□□□□ -0.28
SNX1-212ENST00000560861 STK11IPQ8N1F8 1099 aa13.29□□□□□ -0.28
SNX1-212ENST00000560861 SLC44A5Q8NCS7 719 aa13.29□□□□□ -0.28
SNX1-212ENST00000560861 DPF2Q92785 391 aa13.29□□□□□ -0.28
SNX1-212ENST00000560861 EHD4Q9H223 541 aa13.29□□□□□ -0.28
SNX1-212ENST00000560861 TDRD3Q9H7E2 651 aaKnown RBP13.29□□□□□ -0.28
SNX1-212ENST00000560861 HDAC9Q9UKV0 1011 aa13.29□□□□□ -0.28
SNX1-212ENST00000560861 KLF18A0A0U1RQI7 1052 aa13.28□□□□□ -0.28
SNX1-212ENST00000560861 IFIT3O14879 490 aaKnown RBP13.28□□□□□ -0.28
SNX1-212ENST00000560861 CTDNEP1O95476 244 aa13.28□□□□□ -0.28
SNX1-212ENST00000560861 HSP90AA1P07900 732 aaKnown RBP13.28□□□□□ -0.28
SNX1-212ENST00000560861 CDK8P49336 464 aa13.28□□□□□ -0.28
SNX1-212ENST00000560861 GMPSP49915 693 aaPredicted RBP13.28□□□□□ -0.28
SNX1-212ENST00000560861 CACNB3P54284 484 aa13.28□□□□□ -0.28
SNX1-212ENST00000560861 PDE4BQ07343 736 aa13.28□□□□□ -0.28
SNX1-212ENST00000560861 PICALMQ13492 652 aa13.28□□□□□ -0.28
SNX1-212ENST00000560861 TMEM67Q5HYA8 995 aa13.28□□□□□ -0.28
SNX1-212ENST00000560861 RRP12Q5JTH9 1297 aaKnown RBP13.28□□□□□ -0.28
SNX1-212ENST00000560861 FKBP1CQ5VVH2 108 aa13.28□□□□□ -0.28
SNX1-212ENST00000560861 TTC6Q86TZ1 520 aa13.28□□□□□ -0.28
SNX1-212ENST00000560861 METTL16Q86W50 562 aaKnown RBP13.28□□□□□ -0.28
SNX1-212ENST00000560861 AMOTL1Q8IY63 956 aa13.28□□□□□ -0.28
SNX1-212ENST00000560861 SMARCC2Q8TAQ2 1214 aa13.28□□□□□ -0.28
SNX1-212ENST00000560861 ANKS1AQ92625 1134 aa13.28□□□□□ -0.28
SNX1-212ENST00000560861 ZNF70Q9UC06 446 aaPredicted RBP13.28□□□□□ -0.28
SNX1-212ENST00000560861 TAOK2Q9UL54 1235 aa13.28□□□□□ -0.28
SNX1-212ENST00000560861 CNTNAP1P78357 1384 aa13.28□□□□□ -0.28
SNX1-212ENST00000560861 PLIN4Q96Q06 1357 aa13.28□□□□□ -0.28
SNX1-212ENST00000560861 NOVP48745 357 aa13.27□□□□□ -0.29
SNX1-212ENST00000560861 RBM5P52756 815 aaKnown RBP eCLIP13.27□□□□□ -0.29
SNX1-212ENST00000560861 RCAN1P53805 252 aa13.27□□□□□ -0.29
SNX1-212ENST00000560861 EIF6P56537 245 aaKnown RBP13.27□□□□□ -0.29
SNX1-212ENST00000560861 FGD1P98174 961 aa13.27□□□□□ -0.29
SNX1-212ENST00000560861 RAB3GAP1Q15042 981 aa13.27□□□□□ -0.29
SNX1-212ENST00000560861 DLGAP5Q15398 846 aa13.27□□□□□ -0.29
SNX1-212ENST00000560861 SLC4A8Q2Y0W8 1093 aa13.27□□□□□ -0.29
SNX1-212ENST00000560861 RCSD1Q6JBY9 416 aa13.27□□□□□ -0.29
SNX1-212ENST00000560861 APOA5Q6Q788 366 aa13.27□□□□□ -0.29
SNX1-212ENST00000560861 OGFOD1Q8N543 542 aa13.27□□□□□ -0.29
SNX1-212ENST00000560861 ENAHQ8N8S7 591 aaPredicted RBP13.27□□□□□ -0.29
SNX1-212ENST00000560861 ZNF784Q8NCA9 323 aaPredicted RBP13.27□□□□□ -0.29
SNX1-212ENST00000560861 ZSCAN10Q96SZ4 725 aaPredicted RBP13.27□□□□□ -0.29
SNX1-212ENST00000560861 LLPHQ9BRT6 129 aaKnown RBP13.27□□□□□ -0.29
SNX1-212ENST00000560861 DNAJC18Q9H819 358 aa13.27□□□□□ -0.29
SNX1-212ENST00000560861 TOMM22Q9NS69 142 aa13.27□□□□□ -0.29
SNX1-212ENST00000560861 TCP11L1Q9NUJ3 509 aa13.27□□□□□ -0.29
SNX1-212ENST00000560861 PGAP2Q9UHJ9 254 aa13.27□□□□□ -0.29
SNX1-212ENST00000560861 ZDHHC9Q9Y397 364 aa13.27□□□□□ -0.29
SNX1-212ENST00000560861 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.27□□□□□ -0.29
SNX1-212ENST00000560861 TNKSO95271 1327 aa13.27□□□□□ -0.29
SNX1-212ENST00000560861 DDTLA6NHG4 134 aaPredicted RBP13.26□□□□□ -0.29
SNX1-212ENST00000560861 RANBP6O60518 1105 aaKnown RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms