RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 DDX4Q9NQI0 724 aaKnown RBP22.13■■□□□ 1.13
TSPAN3-208ENST00000560514 RFX7Q2KHR2 1363 aa22.12■■□□□ 1.13
TSPAN3-208ENST00000560514 HMGCS2P54868 508 aa22.12■■□□□ 1.13
TSPAN3-208ENST00000560514 MTMR10Q9NXD2 777 aa22.12■■□□□ 1.13
TSPAN3-208ENST00000560514 IL15P40933 162 aaPredicted RBP22.11■■□□□ 1.13
TSPAN3-208ENST00000560514 TRIM32Q13049 653 aa22.11■■□□□ 1.13
TSPAN3-208ENST00000560514 CCDC102BQ68D86 513 aa22.11■■□□□ 1.13
TSPAN3-208ENST00000560514 FAM163AQ96GL9 167 aaPredicted RBP22.11■■□□□ 1.13
TSPAN3-208ENST00000560514 AS3MTQ9HBK9 375 aa22.11■■□□□ 1.13
TSPAN3-208ENST00000560514 GJD2Q9UKL4 321 aa22.11■■□□□ 1.13
TSPAN3-208ENST00000560514 OGDHLQ9ULD0 1010 aa22.11■■□□□ 1.13
TSPAN3-208ENST00000560514 MROH7-TTC4A0A0A0MT08 1334 aa22.1■■□□□ 1.13
TSPAN3-208ENST00000560514 LOC285556D6RIA3 1793 aa22.1■■□□□ 1.13
TSPAN3-208ENST00000560514 UBTFL1P0CB47 393 aaPredicted RBP22.1■■□□□ 1.13
TSPAN3-208ENST00000560514 CYP2B6P20813 491 aa22.1■■□□□ 1.13
TSPAN3-208ENST00000560514 ERICH6Q7L0X2 663 aa22.1■■□□□ 1.13
TSPAN3-208ENST00000560514 ASCC2Q9H1I8 757 aaPredicted RBP22.1■■□□□ 1.13
TSPAN3-208ENST00000560514 ATAD5Q96QE3 1844 aa22.1■■□□□ 1.13
TSPAN3-208ENST00000560514 FAM196BA6NMK8 535 aa22.09■■□□□ 1.13
TSPAN3-208ENST00000560514 IRX3P78415 501 aaPredicted RBP22.09■■□□□ 1.13
TSPAN3-208ENST00000560514 CCAR1Q8IX12 1150 aaKnown RBP22.09■■□□□ 1.13
TSPAN3-208ENST00000560514 TRIB2Q92519 343 aa22.09■■□□□ 1.13
TSPAN3-208ENST00000560514 NUDT12Q9BQG2 462 aa22.09■■□□□ 1.13
TSPAN3-208ENST00000560514 USP17L5A8MUK1 530 aa22.08■■□□□ 1.13
TSPAN3-208ENST00000560514 ANP32CO43423 234 aa22.08■■□□□ 1.13
TSPAN3-208ENST00000560514 PRKAR2AP13861 404 aaKnown RBP22.08■■□□□ 1.13
TSPAN3-208ENST00000560514 RASGRF1Q13972 1273 aa22.08■■□□□ 1.13
TSPAN3-208ENST00000560514 SOCS4Q8WXH5 440 aa22.08■■□□□ 1.13
TSPAN3-208ENST00000560514 HDAC5Q9UQL6 1122 aa22.08■■□□□ 1.13
TSPAN3-208ENST00000560514 PDS5AQ29RF7 1337 aaKnown RBP22.07■■□□□ 1.12
TSPAN3-208ENST00000560514 GPR75-ASB3A0A0A6YYF3 556 aa22.07■■□□□ 1.12
TSPAN3-208ENST00000560514 ZNF316A6NFI3 1004 aaPredicted RBP22.07■■□□□ 1.12
TSPAN3-208ENST00000560514 ZBTB22O15209 634 aa22.07■■□□□ 1.12
TSPAN3-208ENST00000560514 NPM3O75607 178 aaKnown RBP22.07■■□□□ 1.12
TSPAN3-208ENST00000560514 ADORA1P30542 326 aa22.07■■□□□ 1.12
TSPAN3-208ENST00000560514 CAP2P40123 477 aa22.07■■□□□ 1.12
TSPAN3-208ENST00000560514 PDE3AQ14432 1141 aa22.07■■□□□ 1.12
TSPAN3-208ENST00000560514 TRMT44Q8IYL2 757 aaKnown RBP22.07■■□□□ 1.12
TSPAN3-208ENST00000560514 TMOD4Q9NZQ9 345 aa22.07■■□□□ 1.12
TSPAN3-208ENST00000560514 MAP4K4O95819 1239 aaPredicted RBP22.06■■□□□ 1.12
TSPAN3-208ENST00000560514 LDHCP07864 332 aa22.06■■□□□ 1.12
TSPAN3-208ENST00000560514 GSTO1P78417 241 aa22.06■■□□□ 1.12
TSPAN3-208ENST00000560514 MECOMQ03112 1051 aa22.06■■□□□ 1.12
TSPAN3-208ENST00000560514 FAM9BQ8IZU0 186 aa22.06■■□□□ 1.12
TSPAN3-208ENST00000560514 MORF4L1Q9UBU8 362 aa22.06■■□□□ 1.12
TSPAN3-208ENST00000560514 ZKSCAN1P17029 563 aaPredicted RBP22.05■■□□□ 1.12
TSPAN3-208ENST00000560514 RHBDL3P58872 404 aa22.05■■□□□ 1.12
TSPAN3-208ENST00000560514 SH3D19Q5HYK7 790 aa22.05■■□□□ 1.12
TSPAN3-208ENST00000560514 GPRC5AQ8NFJ5 357 aa22.05■■□□□ 1.12
TSPAN3-208ENST00000560514 SSH1Q8WYL5 1049 aa22.05■■□□□ 1.12
TSPAN3-208ENST00000560514 PLXNB2O15031 1838 aa22.05■■□□□ 1.12
TSPAN3-208ENST00000560514 PFASO15067 1338 aa22.05■■□□□ 1.12
TSPAN3-208ENST00000560514 XRCC5P13010 732 aaKnown RBP22.04■■□□□ 1.12
TSPAN3-208ENST00000560514 TIMM10P62072 90 aa22.04■■□□□ 1.12
TSPAN3-208ENST00000560514 MDM2Q00987 491 aaPredicted RBP22.04■■□□□ 1.12
TSPAN3-208ENST00000560514 MVPQ14764 893 aaKnown RBP22.04■■□□□ 1.12
TSPAN3-208ENST00000560514 MAP3K21Q5TCX8 1036 aa22.04■■□□□ 1.12
TSPAN3-208ENST00000560514 PHF6Q8IWS0 365 aaKnown RBP eCLIP22.04■■□□□ 1.12
TSPAN3-208ENST00000560514 COL25A1Q9BXS0 654 aaPredicted RBP22.04■■□□□ 1.12
TSPAN3-208ENST00000560514 CWC22Q9HCG8 908 aaKnown RBP22.04■■□□□ 1.12
TSPAN3-208ENST00000560514 PA2G4Q9UQ80 394 aaKnown RBP22.04■■□□□ 1.12
TSPAN3-208ENST00000560514 AKAP2Q9Y2D5 859 aa22.04■■□□□ 1.12
TSPAN3-208ENST00000560514 LBHD1Q9BQE6 289 aaPredicted RBP22.03■■□□□ 1.12
TSPAN3-208ENST00000560514 HERC5Q9UII4 1024 aaKnown RBP22.03■■□□□ 1.12
TSPAN3-208ENST00000560514 MAPK4P31152 587 aa22.02■■□□□ 1.12
TSPAN3-208ENST00000560514 MTMR2Q13614 643 aa22.02■■□□□ 1.12
TSPAN3-208ENST00000560514 NOL10Q9BSC4 688 aaKnown RBP22.02■■□□□ 1.12
TSPAN3-208ENST00000560514 UNC80Q8N2C7 3258 aa22.02■■□□□ 1.12
TSPAN3-208ENST00000560514 COL2A1P02458 1487 aaPredicted RBP22.02■■□□□ 1.12
TSPAN3-208ENST00000560514 A0A1B0GUL7 405 aa22.01■■□□□ 1.11
TSPAN3-208ENST00000560514 ASNSP08243 561 aa22.01■■□□□ 1.11
TSPAN3-208ENST00000560514 RGS2P41220 211 aa22.01■■□□□ 1.11
TSPAN3-208ENST00000560514 BACE1P56817 501 aa22.01■■□□□ 1.11
TSPAN3-208ENST00000560514 CACNB2Q08289 660 aaPredicted RBP22.01■■□□□ 1.11
TSPAN3-208ENST00000560514 TEX11Q8IYF3 940 aa22.01■■□□□ 1.11
TSPAN3-208ENST00000560514 XAGE2Q96GT9 111 aa22.01■■□□□ 1.11
TSPAN3-208ENST00000560514 P2RX7Q99572 595 aaKnown RBP22.01■■□□□ 1.11
TSPAN3-208ENST00000560514 TRIM34Q9BYJ4 488 aa22.01■■□□□ 1.11
TSPAN3-208ENST00000560514 COPRSQ9NQ92 184 aa22.01■■□□□ 1.11
TSPAN3-208ENST00000560514 RAI14Q9P0K7 980 aa22.01■■□□□ 1.11
TSPAN3-208ENST00000560514 PI4KBQ9UBF8 816 aa22.01■■□□□ 1.11
TSPAN3-208ENST00000560514 COL6A1P12109 1028 aa22■■□□□ 1.11
TSPAN3-208ENST00000560514 HOXA7P31268 230 aaPredicted RBP22■■□□□ 1.11
TSPAN3-208ENST00000560514 HERVK_113P62684 666 aa22■■□□□ 1.11
TSPAN3-208ENST00000560514 LRRC26Q2I0M4 334 aa22■■□□□ 1.11
TSPAN3-208ENST00000560514 GORABQ5T7V8 394 aa22■■□□□ 1.11
TSPAN3-208ENST00000560514 NEUROD6Q96NK8 337 aa22■■□□□ 1.11
TSPAN3-208ENST00000560514 WDR18Q9BV38 432 aa22■■□□□ 1.11
TSPAN3-208ENST00000560514 SMC4Q9NTJ3 1288 aa22■■□□□ 1.11
TSPAN3-208ENST00000560514 C19orf81C9J6K1 198 aa21.99■■□□□ 1.11
TSPAN3-208ENST00000560514 FAM109BQ6ICB4 259 aaPredicted RBP21.99■■□□□ 1.11
TSPAN3-208ENST00000560514 GTF3C2Q8WUA4 911 aaPredicted RBP21.99■■□□□ 1.11
TSPAN3-208ENST00000560514 E9PSI1 815 aa21.98■■□□□ 1.11
TSPAN3-208ENST00000560514 CCND3P30281 292 aaPredicted RBP21.98■■□□□ 1.11
TSPAN3-208ENST00000560514 RRP1BQ14684 758 aaKnown RBP21.98■■□□□ 1.11
TSPAN3-208ENST00000560514 ALDH1L2Q3SY69 923 aa21.98■■□□□ 1.11
TSPAN3-208ENST00000560514 NSUN4Q96CB9 384 aaKnown RBP21.98■■□□□ 1.11
TSPAN3-208ENST00000560514 FAM161BQ96MY7 647 aa21.98■■□□□ 1.11
TSPAN3-208ENST00000560514 PAGR1Q9BTK6 254 aa21.98■■□□□ 1.11
TSPAN3-208ENST00000560514 DHX36Q9H2U1 1008 aaKnown RBP21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms