RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 NPM3O75607 178 aaKnown RBP13.22□□□□□ -0.29
USP3-218ENST00000560202 PRDM1O75626 825 aa13.22□□□□□ -0.29
USP3-218ENST00000560202 LARGE1O95461 756 aa13.22□□□□□ -0.29
USP3-218ENST00000560202 ZNF280AP59817 542 aaPredicted RBP13.22□□□□□ -0.29
USP3-218ENST00000560202 ME3Q16798 604 aa13.22□□□□□ -0.29
USP3-218ENST00000560202 TTC6Q86TZ1 520 aa13.22□□□□□ -0.29
USP3-218ENST00000560202 DYNLL2Q96FJ2 89 aa13.22□□□□□ -0.29
USP3-218ENST00000560202 TMEM87BQ96K49 555 aa13.22□□□□□ -0.29
USP3-218ENST00000560202 GPHNQ9NQX3 736 aaPredicted RBP13.22□□□□□ -0.29
USP3-218ENST00000560202 FAM198AQ9UFP1 575 aa13.22□□□□□ -0.29
USP3-218ENST00000560202 NAV1Q8NEY1 1877 aa13.21□□□□□ -0.29
USP3-218ENST00000560202 SHTN1A0MZ66 631 aa13.21□□□□□ -0.29
USP3-218ENST00000560202 RANBP6O60518 1105 aaKnown RBP13.21□□□□□ -0.29
USP3-218ENST00000560202 ZBED3Q96IU2 234 aaPredicted RBP13.21□□□□□ -0.29
USP3-218ENST00000560202 SLKQ9H2G2 1235 aaPredicted RBP13.21□□□□□ -0.29
USP3-218ENST00000560202 MYOZ2Q9NPC6 264 aa13.21□□□□□ -0.29
USP3-218ENST00000560202 RNF181Q9P0P0 153 aa13.21□□□□□ -0.29
USP3-218ENST00000560202 SH2B2O14492 632 aaPredicted RBP13.21□□□□□ -0.3
USP3-218ENST00000560202 NT5C2P49902 561 aa13.21□□□□□ -0.3
USP3-218ENST00000560202 EVCP57679 992 aa13.21□□□□□ -0.3
USP3-218ENST00000560202 APOBRQ0VD83 1088 aa13.21□□□□□ -0.3
USP3-218ENST00000560202 TCP10Q12799 353 aa13.21□□□□□ -0.3
USP3-218ENST00000560202 GPR162Q16538 588 aa13.21□□□□□ -0.3
USP3-218ENST00000560202 ZFPM1Q8IX07 1006 aa13.21□□□□□ -0.3
USP3-218ENST00000560202 GPC2Q8N158 579 aa13.21□□□□□ -0.3
USP3-218ENST00000560202 IGDCC4Q8TDY8 1250 aa13.21□□□□□ -0.3
USP3-218ENST00000560202 INTS4Q96HW7 963 aaKnown RBP13.21□□□□□ -0.3
USP3-218ENST00000560202 MTA3Q9BTC8 594 aa13.21□□□□□ -0.3
USP3-218ENST00000560202 MKNK2Q9HBH9 465 aa13.21□□□□□ -0.3
USP3-218ENST00000560202 ZNF287Q9HBT7 754 aa13.21□□□□□ -0.3
USP3-218ENST00000560202 TMOD2Q9NZR1 351 aa13.21□□□□□ -0.3
USP3-218ENST00000560202 ZNF70Q9UC06 446 aaPredicted RBP13.21□□□□□ -0.3
USP3-218ENST00000560202 CNOT7Q9UIV1 285 aaKnown RBP13.21□□□□□ -0.3
USP3-218ENST00000560202 ANGEL1Q9UNK9 670 aaKnown RBP13.21□□□□□ -0.3
USP3-218ENST00000560202 DDX60LQ5H9U9 1706 aaKnown RBP13.2□□□□□ -0.3
USP3-218ENST00000560202 LAMB1P07942 1786 aa13.2□□□□□ -0.3
USP3-218ENST00000560202 CLRN2A0PK11 232 aa13.2□□□□□ -0.3
USP3-218ENST00000560202 IFIT3O14879 490 aaKnown RBP13.2□□□□□ -0.3
USP3-218ENST00000560202 ENTPD3O75355 529 aa13.2□□□□□ -0.3
USP3-218ENST00000560202 SART3Q15020 963 aaKnown RBP13.2□□□□□ -0.3
USP3-218ENST00000560202 SPDYE2Q495Y8 402 aa13.2□□□□□ -0.3
USP3-218ENST00000560202 TMEM67Q5HYA8 995 aa13.2□□□□□ -0.3
USP3-218ENST00000560202 C9orf131Q5VYM1 1079 aa13.2□□□□□ -0.3
USP3-218ENST00000560202 C16orf86Q6ZW13 317 aa13.2□□□□□ -0.3
USP3-218ENST00000560202 MICALL2Q8IY33 904 aa13.2□□□□□ -0.3
USP3-218ENST00000560202 NECAB1Q8N987 351 aa13.2□□□□□ -0.3
USP3-218ENST00000560202 CDK5RAP2Q96SN8 1893 aa13.2□□□□□ -0.3
USP3-218ENST00000560202 DHX36Q9H2U1 1008 aaKnown RBP13.2□□□□□ -0.3
USP3-218ENST00000560202 WNT10BO00744 389 aa13.19□□□□□ -0.3
USP3-218ENST00000560202 MYO1BO43795 1136 aa13.19□□□□□ -0.3
USP3-218ENST00000560202 HLA-DOAP06340 250 aa13.19□□□□□ -0.3
USP3-218ENST00000560202 LIFRP42702 1097 aa13.19□□□□□ -0.3
USP3-218ENST00000560202 CDK8P49336 464 aa13.19□□□□□ -0.3
USP3-218ENST00000560202 RBM26Q5T8P6 1007 aaKnown RBP13.19□□□□□ -0.3
USP3-218ENST00000560202 CCDC83Q8IWF9 413 aa13.19□□□□□ -0.3
USP3-218ENST00000560202 SLC44A5Q8NCS7 719 aa13.19□□□□□ -0.3
USP3-218ENST00000560202 ZNF274Q96GC6 653 aaPredicted RBP13.19□□□□□ -0.3
USP3-218ENST00000560202 ZKSCAN3Q9BRR0 538 aa13.19□□□□□ -0.3
USP3-218ENST00000560202 UBAC1Q9BSL1 405 aa13.19□□□□□ -0.3
USP3-218ENST00000560202 BRPF3Q9ULD4 1205 aa13.19□□□□□ -0.3
USP3-218ENST00000560202 FOCADQ5VW36 1801 aa13.19□□□□□ -0.3
USP3-218ENST00000560202 KLF18A0A0U1RQI7 1052 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 ERICH2A1L162 156 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 DDTLA6NHG4 134 aaPredicted RBP13.18□□□□□ -0.3
USP3-218ENST00000560202 TSPY2A6NKD2 308 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 TCP10L2B9ZVM9 353 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 GRIN3BO60391 1043 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 PDIA3P30101 505 aaKnown RBP13.18□□□□□ -0.3
USP3-218ENST00000560202 GABPAQ06546 454 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 ST3GAL1Q11201 340 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 STK3Q13188 491 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 NBPF9Q3BBW0 867 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 FAM47AQ5JRC9 791 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 FKBP1CQ5VVH2 108 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 SH3BP5LQ7L8J4 393 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 IQCA1Q86XH1 822 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 ZNF444Q8N0Y2 327 aaPredicted RBP13.18□□□□□ -0.3
USP3-218ENST00000560202 ZSCAN10Q96SZ4 725 aaPredicted RBP13.18□□□□□ -0.3
USP3-218ENST00000560202 LY9Q9HBG7 655 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 SERPINB13Q9UIV8 391 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 H7C1D1 291 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 PFKFB2O60825 505 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 EGFRP00533 1210 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 RASA1P20936 1047 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 DDIT3P35638 169 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 TFAP4Q01664 338 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 WTAPQ15007 396 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 SAMD7Q7Z3H4 446 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 SGMS1Q86VZ5 419 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 ZSCAN29Q8IWY8 852 aaPredicted RBP13.18□□□□□ -0.3
USP3-218ENST00000560202 GTF3C6Q969F1 213 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 EHD4Q9H223 541 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 VEZTQ9HBM0 779 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 SENP2Q9HC62 589 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 CWC22Q9HCG8 908 aaKnown RBP13.18□□□□□ -0.3
USP3-218ENST00000560202 PI4KBQ9UBF8 816 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 SWAP70Q9UH65 585 aa13.18□□□□□ -0.3
USP3-218ENST00000560202 NAP1L2Q9ULW6 460 aaPredicted RBP13.18□□□□□ -0.3
USP3-218ENST00000560202 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.18□□□□□ -0.3
USP3-218ENST00000560202 ECM29Q5VYK3 1845 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms