RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 CHRDL2Q6WN34 429 aa11.28□□□□□ -0.6
HDDC3-204ENST00000559834 TBC1D9Q6ZT07 1266 aa11.28□□□□□ -0.6
HDDC3-204ENST00000559834 UBE2Q1Q7Z7E8 422 aa11.28□□□□□ -0.6
HDDC3-204ENST00000559834 FRAT1Q92837 279 aaPredicted RBP11.28□□□□□ -0.6
HDDC3-204ENST00000559834 UNC93B1Q9H1C4 597 aa11.28□□□□□ -0.6
HDDC3-204ENST00000559834 DHX36Q9H2U1 1008 aaKnown RBP11.28□□□□□ -0.6
HDDC3-204ENST00000559834 AS3MTQ9HBK9 375 aa11.28□□□□□ -0.6
HDDC3-204ENST00000559834 PI4KBQ9UBF8 816 aa11.28□□□□□ -0.6
HDDC3-204ENST00000559834 HERC5Q9UII4 1024 aaKnown RBP11.28□□□□□ -0.6
HDDC3-204ENST00000559834 INHAP05111 366 aa11.27□□□□□ -0.61
HDDC3-204ENST00000559834 SLURP2P0DP57 97 aa11.27□□□□□ -0.61
HDDC3-204ENST00000559834 ELNP15502 786 aa11.27□□□□□ -0.61
HDDC3-204ENST00000559834 CCDC158Q5M9N0 1113 aa11.27□□□□□ -0.61
HDDC3-204ENST00000559834 FOXP4Q8IVH2 680 aaPredicted RBP11.27□□□□□ -0.61
HDDC3-204ENST00000559834 TEX11Q8IYF3 940 aa11.27□□□□□ -0.61
HDDC3-204ENST00000559834 ZNF384Q8TF68 577 aa11.27□□□□□ -0.61
HDDC3-204ENST00000559834 TAOK2Q9UL54 1235 aa11.27□□□□□ -0.61
HDDC3-204ENST00000559834 ZSWIM8A7E2V4 1837 aa11.26□□□□□ -0.61
HDDC3-204ENST00000559834 FAM196BA6NMK8 535 aa11.26□□□□□ -0.61
HDDC3-204ENST00000559834 EVI5O60447 810 aa11.26□□□□□ -0.61
HDDC3-204ENST00000559834 TRIM27P14373 513 aa11.26□□□□□ -0.61
HDDC3-204ENST00000559834 MCAMP43121 646 aa11.26□□□□□ -0.61
HDDC3-204ENST00000559834 HMGCS2P54868 508 aa11.26□□□□□ -0.61
HDDC3-204ENST00000559834 SH3D19Q5HYK7 790 aa11.26□□□□□ -0.61
HDDC3-204ENST00000559834 TTC39AQ5SRH9 613 aa11.26□□□□□ -0.61
HDDC3-204ENST00000559834 TREML2Q5T2D2 321 aa11.26□□□□□ -0.61
HDDC3-204ENST00000559834 NAA16Q6N069 864 aaPredicted RBP11.26□□□□□ -0.61
HDDC3-204ENST00000559834 PI16Q6UXB8 463 aa11.26□□□□□ -0.61
HDDC3-204ENST00000559834 CCDC84Q86UT8 332 aaPredicted RBP11.26□□□□□ -0.61
HDDC3-204ENST00000559834 DEFB118Q96PH6 123 aa11.26□□□□□ -0.61
HDDC3-204ENST00000559834 TRIM34Q9BYJ4 488 aa11.26□□□□□ -0.61
HDDC3-204ENST00000559834 GPR108Q9NPR9 543 aa11.26□□□□□ -0.61
HDDC3-204ENST00000559834 GINM1Q9NU53 330 aa11.26□□□□□ -0.61
HDDC3-204ENST00000559834 TMOD4Q9NZQ9 345 aa11.26□□□□□ -0.61
HDDC3-204ENST00000559834 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.26□□□□□ -0.61
HDDC3-204ENST00000559834 PNMA6EA0A0J9YXQ4 647 aa11.25□□□□□ -0.61
HDDC3-204ENST00000559834 C19orf81C9J6K1 198 aa11.25□□□□□ -0.61
HDDC3-204ENST00000559834 ASNSP08243 561 aa11.25□□□□□ -0.61
HDDC3-204ENST00000559834 PPP4CP60510 307 aa11.25□□□□□ -0.61
HDDC3-204ENST00000559834 OS9Q13438 667 aaPredicted RBP11.25□□□□□ -0.61
HDDC3-204ENST00000559834 SH3RF3Q8TEJ3 882 aaPredicted RBP11.25□□□□□ -0.61
HDDC3-204ENST00000559834 CLUAP1Q96AJ1 413 aa11.25□□□□□ -0.61
HDDC3-204ENST00000559834 WDR18Q9BV38 432 aa11.25□□□□□ -0.61
HDDC3-204ENST00000559834 ASCC2Q9H1I8 757 aaPredicted RBP11.25□□□□□ -0.61
HDDC3-204ENST00000559834 PAK6Q9NQU5 681 aaPredicted RBP11.25□□□□□ -0.61
HDDC3-204ENST00000559834 RBM27Q9P2N5 1060 aaKnown RBP11.25□□□□□ -0.61
HDDC3-204ENST00000559834 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.25□□□□□ -0.61
HDDC3-204ENST00000559834 COL2A1P02458 1487 aaPredicted RBP11.25□□□□□ -0.61
HDDC3-204ENST00000559834 HTTP42858 3142 aa11.24□□□□□ -0.61
HDDC3-204ENST00000559834 ZBTB7BO15156 539 aaPredicted RBP11.24□□□□□ -0.61
HDDC3-204ENST00000559834 BCAR3O75815 825 aa11.24□□□□□ -0.61
HDDC3-204ENST00000559834 BACE1P56817 501 aa11.24□□□□□ -0.61
HDDC3-204ENST00000559834 IRX3P78415 501 aaPredicted RBP11.24□□□□□ -0.61
HDDC3-204ENST00000559834 ATP8B2P98198 1209 aa11.24□□□□□ -0.61
HDDC3-204ENST00000559834 ZKSCAN2Q63HK3 967 aa11.24□□□□□ -0.61
HDDC3-204ENST00000559834 NECAB2Q7Z6G3 386 aa11.24□□□□□ -0.61
HDDC3-204ENST00000559834 CRACR2BQ8N4Y2 399 aaPredicted RBP11.24□□□□□ -0.61
HDDC3-204ENST00000559834 TGFBRAP1Q8WUH2 860 aa11.24□□□□□ -0.61
HDDC3-204ENST00000559834 CRISPLD2Q9H0B8 497 aa11.24□□□□□ -0.61
HDDC3-204ENST00000559834 HMX1Q9NP08 348 aaPredicted RBP11.24□□□□□ -0.61
HDDC3-204ENST00000559834 SNRKQ9NRH2 765 aa11.24□□□□□ -0.61
HDDC3-204ENST00000559834 AATFQ9NY61 560 aaKnown RBP eCLIP11.24□□□□□ -0.61
HDDC3-204ENST00000559834 DOCK2Q92608 1830 aa11.23□□□□□ -0.61
HDDC3-204ENST00000559834 SURF6O75683 361 aaKnown RBP11.23□□□□□ -0.61
HDDC3-204ENST00000559834 HMGCRP04035 888 aa11.23□□□□□ -0.61
HDDC3-204ENST00000559834 HLA-DOAP06340 250 aa11.23□□□□□ -0.61
HDDC3-204ENST00000559834 HOXA7P31268 230 aaPredicted RBP11.23□□□□□ -0.61
HDDC3-204ENST00000559834 POLA2Q14181 598 aa11.23□□□□□ -0.61
HDDC3-204ENST00000559834 TNNI3KQ59H18 835 aa11.23□□□□□ -0.61
HDDC3-204ENST00000559834 CCAR1Q8IX12 1150 aaKnown RBP11.23□□□□□ -0.61
HDDC3-204ENST00000559834 ANKLE1Q8NAG6 615 aa11.23□□□□□ -0.61
HDDC3-204ENST00000559834 GPRC5AQ8NFJ5 357 aa11.23□□□□□ -0.61
HDDC3-204ENST00000559834 ZNF512BQ96KM6 892 aaPredicted RBP11.23□□□□□ -0.61
HDDC3-204ENST00000559834 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.23□□□□□ -0.61
HDDC3-204ENST00000559834 GJD2Q9UKL4 321 aa11.23□□□□□ -0.61
HDDC3-204ENST00000559834 FPGT-TNNI3KV9GXZ4 949 aa11.23□□□□□ -0.61
HDDC3-204ENST00000559834 RPTORQ8N122 1335 aa11.23□□□□□ -0.61
HDDC3-204ENST00000559834 A0A1W2PPC1 479 aa11.22□□□□□ -0.61
HDDC3-204ENST00000559834 USP17L10C9JJH3 530 aa11.22□□□□□ -0.61
HDDC3-204ENST00000559834 MGAMO43451 1857 aa11.22□□□□□ -0.61
HDDC3-204ENST00000559834 MTMR2Q13614 643 aa11.22□□□□□ -0.61
HDDC3-204ENST00000559834 RRP1BQ14684 758 aaKnown RBP11.22□□□□□ -0.61
HDDC3-204ENST00000559834 METTL16Q86W50 562 aaKnown RBP11.22□□□□□ -0.61
HDDC3-204ENST00000559834 CERS3Q8IU89 383 aa11.22□□□□□ -0.61
HDDC3-204ENST00000559834 MAPKAPK5Q8IW41 473 aa11.22□□□□□ -0.61
HDDC3-204ENST00000559834 TMEM57Q8N5G2 664 aa11.22□□□□□ -0.61
HDDC3-204ENST00000559834 SSH3Q8TE77 659 aa11.22□□□□□ -0.61
HDDC3-204ENST00000559834 GTF3C2Q8WUA4 911 aaPredicted RBP11.22□□□□□ -0.61
HDDC3-204ENST00000559834 PAWRQ96IZ0 340 aaKnown RBP11.22□□□□□ -0.61
HDDC3-204ENST00000559834 P2RX7Q99572 595 aaKnown RBP11.22□□□□□ -0.61
HDDC3-204ENST00000559834 DBNDD2Q9BQY9 259 aa11.22□□□□□ -0.61
HDDC3-204ENST00000559834 MORF4L1Q9UBU8 362 aa11.22□□□□□ -0.61
HDDC3-204ENST00000559834 CEP290O15078 2479 aa11.21□□□□□ -0.61
HDDC3-204ENST00000559834 DOCK1Q14185 1865 aa11.21□□□□□ -0.61
HDDC3-204ENST00000559834 CYP2E1P05181 493 aaPredicted RBP11.21□□□□□ -0.61
HDDC3-204ENST00000559834 XRCC5P13010 732 aaKnown RBP11.21□□□□□ -0.61
HDDC3-204ENST00000559834 TRMT44Q8IYL2 757 aaKnown RBP11.21□□□□□ -0.61
HDDC3-204ENST00000559834 NUDT12Q9BQG2 462 aa11.21□□□□□ -0.61
HDDC3-204ENST00000559834 NBPF3Q9H094 633 aa11.21□□□□□ -0.61
HDDC3-204ENST00000559834 PALD1Q9ULE6 856 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms