RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 C12orf60Q5U649 245 aa10.98□□□□□ -0.65
LDLR-210ENST00000559340 CTR9Q6PD62 1173 aa10.98□□□□□ -0.65
LDLR-210ENST00000559340 C2orf69Q8N8R5 385 aa10.98□□□□□ -0.65
LDLR-210ENST00000559340 MAP4K1Q92918 833 aa10.98□□□□□ -0.65
LDLR-210ENST00000559340 CDCA5Q96FF9 252 aa10.98□□□□□ -0.65
LDLR-210ENST00000559340 ZNF341Q9BYN7 854 aa10.98□□□□□ -0.65
LDLR-210ENST00000559340 EHD4Q9H223 541 aa10.98□□□□□ -0.65
LDLR-210ENST00000559340 RNF41Q9H4P4 317 aaPredicted RBP10.98□□□□□ -0.65
LDLR-210ENST00000559340 UPF2Q9HAU5 1272 aaKnown RBP10.98□□□□□ -0.65
LDLR-210ENST00000559340 SWAP70Q9UH65 585 aa10.98□□□□□ -0.65
LDLR-210ENST00000559340 SERPINB13Q9UIV8 391 aa10.98□□□□□ -0.65
LDLR-210ENST00000559340 PALD1Q9ULE6 856 aa10.98□□□□□ -0.65
LDLR-210ENST00000559340 LAMA4Q16363 1823 aa10.98□□□□□ -0.65
LDLR-210ENST00000559340 DDTLA6NHG4 134 aaPredicted RBP10.97□□□□□ -0.65
LDLR-210ENST00000559340 UNCXA6NJT0 531 aa10.97□□□□□ -0.65
LDLR-210ENST00000559340 ADM5C9JUS6 153 aa10.97□□□□□ -0.65
LDLR-210ENST00000559340 ITGBL1O95965 494 aaPredicted RBP10.97□□□□□ -0.65
LDLR-210ENST00000559340 PPARAQ07869 468 aa10.97□□□□□ -0.65
LDLR-210ENST00000559340 NBPF12Q5TAG4 269 aaPredicted RBP10.97□□□□□ -0.65
LDLR-210ENST00000559340 VPS53Q5VIR6 699 aa10.97□□□□□ -0.65
LDLR-210ENST00000559340 ZFPM1Q8IX07 1006 aa10.97□□□□□ -0.65
LDLR-210ENST00000559340 TEPSINQ96N21 525 aa10.97□□□□□ -0.65
LDLR-210ENST00000559340 LSG1Q9H089 658 aaKnown RBP10.97□□□□□ -0.65
LDLR-210ENST00000559340 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.97□□□□□ -0.65
LDLR-210ENST00000559340 MKNK2Q9HBH9 465 aa10.97□□□□□ -0.65
LDLR-210ENST00000559340 GINM1Q9NU53 330 aa10.97□□□□□ -0.65
LDLR-210ENST00000559340 CAPN15O75808 1086 aa10.96□□□□□ -0.65
LDLR-210ENST00000559340 ZKSCAN1P17029 563 aaPredicted RBP10.96□□□□□ -0.65
LDLR-210ENST00000559340 MAP3K10Q02779 954 aa10.96□□□□□ -0.65
LDLR-210ENST00000559340 PTH1RQ03431 593 aa10.96□□□□□ -0.65
LDLR-210ENST00000559340 ZNF444Q8N0Y2 327 aaPredicted RBP10.96□□□□□ -0.65
LDLR-210ENST00000559340 CCDC17Q96LX7 622 aa10.96□□□□□ -0.65
LDLR-210ENST00000559340 EPB41L4AQ9HCS5 686 aaPredicted RBP10.96□□□□□ -0.65
LDLR-210ENST00000559340 ANAPC4Q9UJX5 808 aa10.96□□□□□ -0.65
LDLR-210ENST00000559340 RBM8AQ9Y5S9 174 aaKnown RBP10.96□□□□□ -0.65
LDLR-210ENST00000559340 ATAD5Q96QE3 1844 aa10.95□□□□□ -0.66
LDLR-210ENST00000559340 DDX60LQ5H9U9 1706 aaKnown RBP10.95□□□□□ -0.66
LDLR-210ENST00000559340 PASKQ96RG2 1323 aa10.95□□□□□ -0.66
LDLR-210ENST00000559340 CELF2O95319 508 aaKnown RBP10.95□□□□□ -0.66
LDLR-210ENST00000559340 PLCD1P51178 756 aa10.95□□□□□ -0.66
LDLR-210ENST00000559340 MAP3K9P80192 1104 aa10.95□□□□□ -0.66
LDLR-210ENST00000559340 TRDNQ13061 729 aa10.95□□□□□ -0.66
LDLR-210ENST00000559340 KRT32Q14532 448 aa10.95□□□□□ -0.66
LDLR-210ENST00000559340 PPP4R3BQ5MIZ7 849 aa10.95□□□□□ -0.66
LDLR-210ENST00000559340 PRAMEF18Q5VWM3 479 aa10.95□□□□□ -0.66
LDLR-210ENST00000559340 MFSD6Q6ZSS7 791 aa10.95□□□□□ -0.66
LDLR-210ENST00000559340 SH3BP5LQ7L8J4 393 aa10.95□□□□□ -0.66
LDLR-210ENST00000559340 METTL16Q86W50 562 aaKnown RBP10.95□□□□□ -0.66
LDLR-210ENST00000559340 KRT23Q9C075 422 aa10.95□□□□□ -0.66
LDLR-210ENST00000559340 CNNM2Q9H8M5 875 aa10.95□□□□□ -0.66
LDLR-210ENST00000559340 ZNF408Q9H9D4 720 aa10.95□□□□□ -0.66
LDLR-210ENST00000559340 GBA2Q9HCG7 927 aaPredicted RBP10.95□□□□□ -0.66
LDLR-210ENST00000559340 CABP5Q9NP86 173 aa10.95□□□□□ -0.66
LDLR-210ENST00000559340 SCAF8Q9UPN6 1271 aaKnown RBP10.95□□□□□ -0.66
LDLR-210ENST00000559340 PAPPA2Q9BXP8 1791 aa10.95□□□□□ -0.66
LDLR-210ENST00000559340 SIPA1L1O43166 1804 aa10.94□□□□□ -0.66
LDLR-210ENST00000559340 TRAF5O00463 557 aa10.94□□□□□ -0.66
LDLR-210ENST00000559340 CTNND1O60716 968 aaKnown RBP10.94□□□□□ -0.66
LDLR-210ENST00000559340 USP2O75604 605 aaPredicted RBP10.94□□□□□ -0.66
LDLR-210ENST00000559340 CDK8P49336 464 aa10.94□□□□□ -0.66
LDLR-210ENST00000559340 MAP3K11Q16584 847 aa10.94□□□□□ -0.66
LDLR-210ENST00000559340 C8orf34Q49A92 452 aa10.94□□□□□ -0.66
LDLR-210ENST00000559340 CERKLQ49MI3 558 aaPredicted RBP10.94□□□□□ -0.66
LDLR-210ENST00000559340 AKNAD1Q5T1N1 836 aa10.94□□□□□ -0.66
LDLR-210ENST00000559340 C16orf86Q6ZW13 317 aa10.94□□□□□ -0.66
LDLR-210ENST00000559340 MIGA2Q7L4E1 593 aa10.94□□□□□ -0.66
LDLR-210ENST00000559340 USP26Q9BXU7 913 aa10.94□□□□□ -0.66
LDLR-210ENST00000559340 IL25Q9H293 177 aa10.94□□□□□ -0.66
LDLR-210ENST00000559340 ANGEL1Q9UNK9 670 aaKnown RBP10.94□□□□□ -0.66
LDLR-210ENST00000559340 CSADQ9Y600 493 aa10.94□□□□□ -0.66
LDLR-210ENST00000559340 ROBO3Q96MS0 1386 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 TMEM88BA6NKF7 163 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 FOXP2O15409 715 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 ORC4O43929 436 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 CYP2D6P10635 497 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 HAND2P61296 217 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 GABPAQ06546 454 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 NECTIN1Q15223 517 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 SLC4A8Q2Y0W8 1093 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 CCDC178Q5BJE1 867 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 CREB3L3Q68CJ9 461 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 TATDN1Q6P1N9 297 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 POTEDQ86YR6 584 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 ANKRD13AQ8IZ07 590 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 STAG1Q8WVM7 1258 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 TBC1D2Q9BYX2 928 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 PRDM10Q9NQV6 1147 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 PICK1Q9NRD5 415 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 TOMM22Q9NS69 142 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 ZNF112Q9UJU3 913 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 DOCK1Q14185 1865 aa10.93□□□□□ -0.66
LDLR-210ENST00000559340 MYH4Q9Y623 1939 aa10.92□□□□□ -0.66
LDLR-210ENST00000559340 CYP2D7A0A087X1C5 515 aa10.92□□□□□ -0.66
LDLR-210ENST00000559340 SLC27A2O14975 620 aa10.92□□□□□ -0.66
LDLR-210ENST00000559340 ASNSP08243 561 aa10.92□□□□□ -0.66
LDLR-210ENST00000559340 FGRP09769 529 aa10.92□□□□□ -0.66
LDLR-210ENST00000559340 PSMA5P28066 241 aa10.92□□□□□ -0.66
LDLR-210ENST00000559340 HSPA4P34932 840 aa10.92□□□□□ -0.66
LDLR-210ENST00000559340 CAP2P40123 477 aa10.92□□□□□ -0.66
LDLR-210ENST00000559340 CTDSPL2Q05D32 466 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms