RNA–Protein interactions for RNA: ENST00000558768.5

TRPM1-208, Transcript of transient receptor potential cation channel subfamily M member 1, human

APPRIS ALT2 TSL 1 (best)

Gene TRPM1, Length 4,581 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRPM1-208	ENST00000558768	ARHGAP18	Q8N392	663 aa		10.77	□□□□□ -0.68
TRPM1-208	ENST00000558768	PRPF31	Q8WWY3	499 aa	Known RBP	10.77	□□□□□ -0.68
TRPM1-208	ENST00000558768	BATF3	Q9NR55	127 aa		10.77	□□□□□ -0.68
TRPM1-208	ENST00000558768	PPP1R12A	O14974	1030 aa	Predicted RBP	10.77	□□□□□ -0.69
TRPM1-208	ENST00000558768	HDGFL1	Q5TGJ6	251 aa		10.77	□□□□□ -0.69
TRPM1-208	ENST00000558768	AACS	Q86V21	672 aa		10.77	□□□□□ -0.69
TRPM1-208	ENST00000558768	CALR3	Q96L12	384 aa	Known RBP	10.77	□□□□□ -0.69
TRPM1-208	ENST00000558768	BMP15	O95972	392 aa		10.77	□□□□□ -0.69
TRPM1-208	ENST00000558768	TROVE2	P10155	538 aa	Known RBP eCLIP	10.77	□□□□□ -0.69
TRPM1-208	ENST00000558768	CPA1	P15085	419 aa		10.77	□□□□□ -0.69
TRPM1-208	ENST00000558768	UBA7	P41226	1012 aa		10.77	□□□□□ -0.69
TRPM1-208	ENST00000558768	RBM6	P78332	1123 aa	Known RBP	10.77	□□□□□ -0.69
TRPM1-208	ENST00000558768	TRAF1	Q13077	416 aa		10.77	□□□□□ -0.69
TRPM1-208	ENST00000558768	IFT88	Q13099	833 aa		10.77	□□□□□ -0.69
TRPM1-208	ENST00000558768	GFM2	Q969S9	779 aa	Known RBP	10.77	□□□□□ -0.69
TRPM1-208	ENST00000558768	BICD1	Q96G01	975 aa		10.77	□□□□□ -0.69
TRPM1-208	ENST00000558768	EMILIN1	Q9Y6C2	1016 aa		10.77	□□□□□ -0.69
TRPM1-208	ENST00000558768	ABCC10	Q5T3U5	1492 aa		10.77	□□□□□ -0.69
TRPM1-208	ENST00000558768	NDC80	O14777	642 aa		10.77	□□□□□ -0.69
TRPM1-208	ENST00000558768	RABGGTA	Q92696	567 aa		10.77	□□□□□ -0.69
TRPM1-208	ENST00000558768	BAG2	O95816	211 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	CFAP61	Q8NHU2	1237 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	LRRC27	Q9C0I9	530 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	TCP11L1	Q9NUJ3	509 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	HHAT	Q5VTY9	493 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	CDC37L1	Q7L3B6	337 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	PPP1R42	Q7Z4L9	355 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	POLK	Q9UBT6	870 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	NR1I2	O75469	434 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	CUL3	Q13618	768 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	TRIM14	Q14142	442 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	SLC30A9	Q6PML9	568 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	ST13P4	Q8IZP2	240 aa	Predicted RBP	10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	FAM204A	Q9H8W3	233 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	TXNDC16	Q9P2K2	825 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	STAP2	Q9UGK3	403 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	MKL2	Q9ULH7	1088 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	DAAM1	Q9Y4D1	1078 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	NUB1	Q9Y5A7	615 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	PIK3R4	Q99570	1358 aa		10.76	□□□□□ -0.69
TRPM1-208	ENST00000558768	TMEM266	Q2M3C6	531 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	GNPTAB	Q3T906	1256 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	ARMCX6	Q7L4S7	300 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	TBC1D5	Q92609	795 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	PPP1R13B	Q96KQ4	1090 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	CHCHD3	Q9NX63	227 aa	Known RBP	10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	ORC3	Q9UBD5	711 aa	Predicted RBP	10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	MRC2	Q9UBG0	1479 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	TTC41P	Q6P2S7	1318 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	PHLPP2	Q6ZVD8	1323 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	EIF3CL	B5ME19	914 aa	Known RBP	10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	SUN1	O94901	812 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	CCDC197	Q8NCU1	140 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	IWS1	Q96ST2	819 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	EIF3C	Q99613	913 aa	Known RBP	10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	SOS1	Q07889	1333 aa	Predicted RBP	10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	TTC39A	Q5SRH9	613 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	RRAGB	Q5VZM2	374 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	CREB3L3	Q68CJ9	461 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	HIBCH	Q6NVY1	386 aa	Predicted RBP	10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	KLHL29	Q96CT2	875 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	DRC3	Q9H069	523 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	PDE11A	Q9HCR9	933 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	CTTNBP2NL	Q9P2B4	639 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	HSP90AA4P	Q58FG1	418 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	DACT3	Q96B18	629 aa	Predicted RBP	10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	UTP11	Q9Y3A2	253 aa	Known RBP	10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768		A0A1W2PP64	1363 aa		10.75	□□□□□ -0.69
TRPM1-208	ENST00000558768	APOE	P02649	317 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	STX2	P32856	288 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	SEPT2	Q15019	361 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	RRS1	Q15050	365 aa	Known RBP	10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	GSTA5	Q7RTV2	222 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	LONP1	P36776	959 aa	Known RBP	10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	TMTC1	Q8IUR5	882 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	TEX11	Q8IYF3	940 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	NME8	Q8N427	588 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	SH2D4A	Q9H788	454 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	MIS18A	Q9NYP9	233 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	IQSEC2	Q5JU85	1478 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	LMNB2	Q03252	620 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	MMRN2	Q9H8L6	949 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	ZNF711	Q9Y462	761 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	CCDC151	A5D8V7	595 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	WDR78	Q5VTH9	848 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	CEP70	Q8NHQ1	597 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	CALML4	Q96GE6	196 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	XPO4	Q9C0E2	1151 aa	Known RBP	10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	ST7	Q9NRC1	585 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	TSKS	Q9UJT2	592 aa		10.74	□□□□□ -0.69
TRPM1-208	ENST00000558768	RGS16	O15492	202 aa	Predicted RBP	10.73	□□□□□ -0.69
TRPM1-208	ENST00000558768	ME3	Q16798	604 aa		10.73	□□□□□ -0.69
TRPM1-208	ENST00000558768	RRP36	Q96EU6	259 aa	Known RBP	10.73	□□□□□ -0.69
TRPM1-208	ENST00000558768	MIS12	Q9H081	205 aa		10.73	□□□□□ -0.69
TRPM1-208	ENST00000558768	ADAM21	Q9UKJ8	722 aa		10.73	□□□□□ -0.69
TRPM1-208	ENST00000558768	SEC31A	O94979	1220 aa	Known RBP	10.73	□□□□□ -0.69
TRPM1-208	ENST00000558768	ATP1A2	P50993	1020 aa		10.73	□□□□□ -0.69
TRPM1-208	ENST00000558768	CCDC152	Q4G0S7	254 aa		10.73	□□□□□ -0.69
TRPM1-208	ENST00000558768	ZNF513	Q8N8E2	541 aa	Predicted RBP	10.73	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms