RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 PLCD1P51178 756 aa11.43□□□□□ -0.58
CUX1-216ENST00000558469 CTDSPL2Q05D32 466 aa11.43□□□□□ -0.58
CUX1-216ENST00000558469 PPARAQ07869 468 aa11.43□□□□□ -0.58
CUX1-216ENST00000558469 C12orf60Q5U649 245 aa11.43□□□□□ -0.58
CUX1-216ENST00000558469 RNF20Q5VTR2 975 aa11.43□□□□□ -0.58
CUX1-216ENST00000558469 CREB3L3Q68CJ9 461 aa11.43□□□□□ -0.58
CUX1-216ENST00000558469 SH3BP5LQ7L8J4 393 aa11.43□□□□□ -0.58
CUX1-216ENST00000558469 TTC6Q86TZ1 520 aa11.43□□□□□ -0.58
CUX1-216ENST00000558469 SULF1Q8IWU6 871 aa11.43□□□□□ -0.58
CUX1-216ENST00000558469 STK11IPQ8N1F8 1099 aa11.43□□□□□ -0.58
CUX1-216ENST00000558469 DEFB129Q9H1M3 183 aa11.43□□□□□ -0.58
CUX1-216ENST00000558469 CREBZFQ9NS37 354 aa11.43□□□□□ -0.58
CUX1-216ENST00000558469 PGAP2Q9UHJ9 254 aa11.43□□□□□ -0.58
CUX1-216ENST00000558469 ATAD5Q96QE3 1844 aa11.43□□□□□ -0.58
CUX1-216ENST00000558469 COL2A1P02458 1487 aaPredicted RBP11.43□□□□□ -0.58
CUX1-216ENST00000558469 HLA-DOAP06340 250 aa11.42□□□□□ -0.58
CUX1-216ENST00000558469 CYP21A2P08686 494 aa11.42□□□□□ -0.58
CUX1-216ENST00000558469 YY1P25490 414 aa11.42□□□□□ -0.58
CUX1-216ENST00000558469 HSPA4P34932 840 aa11.42□□□□□ -0.58
CUX1-216ENST00000558469 PRAMEF18Q5VWM3 479 aa11.42□□□□□ -0.58
CUX1-216ENST00000558469 KRT26Q7Z3Y9 468 aa11.42□□□□□ -0.58
CUX1-216ENST00000558469 USP48Q86UV5 1035 aa11.42□□□□□ -0.58
CUX1-216ENST00000558469 CDAN1Q8IWY9 1227 aa11.42□□□□□ -0.58
CUX1-216ENST00000558469 CSRNP1Q96S65 589 aa11.42□□□□□ -0.58
CUX1-216ENST00000558469 C22orf23Q9BZE7 217 aa11.42□□□□□ -0.58
CUX1-216ENST00000558469 NBPF3Q9H094 633 aa11.42□□□□□ -0.58
CUX1-216ENST00000558469 FARP1Q9Y4F1 1045 aaPredicted RBP11.42□□□□□ -0.58
CUX1-216ENST00000558469 TRPM7Q96QT4 1865 aa11.42□□□□□ -0.58
CUX1-216ENST00000558469 ATRNL1Q5VV63 1379 aa11.41□□□□□ -0.58
CUX1-216ENST00000558469 ADM5C9JUS6 153 aa11.41□□□□□ -0.58
CUX1-216ENST00000558469 SLC3A2P08195 630 aaKnown RBP11.41□□□□□ -0.58
CUX1-216ENST00000558469 ZKSCAN1P17029 563 aaPredicted RBP11.41□□□□□ -0.58
CUX1-216ENST00000558469 MAP1SQ66K74 1059 aaPredicted RBP11.41□□□□□ -0.58
CUX1-216ENST00000558469 DLK2Q6UY11 383 aa11.41□□□□□ -0.58
CUX1-216ENST00000558469 LDHDQ86WU2 507 aa11.41□□□□□ -0.58
CUX1-216ENST00000558469 RASEFQ8IZ41 740 aa11.41□□□□□ -0.58
CUX1-216ENST00000558469 CRACR2BQ8N4Y2 399 aaPredicted RBP11.41□□□□□ -0.58
CUX1-216ENST00000558469 DYNLL2Q96FJ2 89 aa11.41□□□□□ -0.58
CUX1-216ENST00000558469 TEPSINQ96N21 525 aa11.41□□□□□ -0.58
CUX1-216ENST00000558469 INCENPQ9NQS7 918 aa11.41□□□□□ -0.58
CUX1-216ENST00000558469 PI4KBQ9UBF8 816 aa11.41□□□□□ -0.58
CUX1-216ENST00000558469 ANAPC4Q9UJX5 808 aa11.41□□□□□ -0.58
CUX1-216ENST00000558469 PPP2R3BQ9Y5P8 575 aa11.41□□□□□ -0.58
CUX1-216ENST00000558469 TAF6LQ9Y6J9 622 aa11.41□□□□□ -0.58
CUX1-216ENST00000558469 E7EWF7 191 aa11.4□□□□□ -0.58
CUX1-216ENST00000558469 SLURP2P0DP57 97 aa11.4□□□□□ -0.58
CUX1-216ENST00000558469 PDE4BQ07343 736 aa11.4□□□□□ -0.58
CUX1-216ENST00000558469 AKNAD1Q5T1N1 836 aa11.4□□□□□ -0.58
CUX1-216ENST00000558469 NBPF12Q5TAG4 269 aaPredicted RBP11.4□□□□□ -0.58
CUX1-216ENST00000558469 MFSD6Q6ZSS7 791 aa11.4□□□□□ -0.58
CUX1-216ENST00000558469 CDC37L1Q7L3B6 337 aa11.4□□□□□ -0.58
CUX1-216ENST00000558469 TBC1D10CQ8IV04 446 aa11.4□□□□□ -0.58
CUX1-216ENST00000558469 FOXP4Q8IVH2 680 aaPredicted RBP11.4□□□□□ -0.58
CUX1-216ENST00000558469 KCNB2Q92953 911 aa11.4□□□□□ -0.58
CUX1-216ENST00000558469 TRIM34Q9BYJ4 488 aa11.4□□□□□ -0.58
CUX1-216ENST00000558469 GLIS2Q9BZE0 524 aaPredicted RBP11.4□□□□□ -0.58
CUX1-216ENST00000558469 EHD4Q9H223 541 aa11.4□□□□□ -0.58
CUX1-216ENST00000558469 SERPINB13Q9UIV8 391 aa11.4□□□□□ -0.58
CUX1-216ENST00000558469 SNX14Q9Y5W7 946 aa11.4□□□□□ -0.58
CUX1-216ENST00000558469 TACC3Q9Y6A5 838 aa11.4□□□□□ -0.58
CUX1-216ENST00000558469 ROBO3Q96MS0 1386 aa11.4□□□□□ -0.59
CUX1-216ENST00000558469 FAM196BA6NMK8 535 aa11.39□□□□□ -0.59
CUX1-216ENST00000558469 PRDM1O75626 825 aa11.39□□□□□ -0.59
CUX1-216ENST00000558469 CDK8P49336 464 aa11.39□□□□□ -0.59
CUX1-216ENST00000558469 C16orf86Q6ZW13 317 aa11.39□□□□□ -0.59
CUX1-216ENST00000558469 MIGA2Q7L4E1 593 aa11.39□□□□□ -0.59
CUX1-216ENST00000558469 SLC44A5Q8NCS7 719 aa11.39□□□□□ -0.59
CUX1-216ENST00000558469 STAG1Q8WVM7 1258 aa11.39□□□□□ -0.59
CUX1-216ENST00000558469 TBC1D32Q96NH3 1257 aa11.39□□□□□ -0.59
CUX1-216ENST00000558469 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.39□□□□□ -0.591e-15■■■■■ 82.2
CUX1-216ENST00000558469 MKNK2Q9HBH9 465 aa11.39□□□□□ -0.59
CUX1-216ENST00000558469 TOMM22Q9NS69 142 aa11.39□□□□□ -0.59
CUX1-216ENST00000558469 OTOFQ9HC10 1997 aa11.39□□□□□ -0.59
CUX1-216ENST00000558469 MYH4Q9Y623 1939 aa11.39□□□□□ -0.59
CUX1-216ENST00000558469 KIF3CO14782 793 aa11.38□□□□□ -0.59
CUX1-216ENST00000558469 RBM25P49756 843 aaKnown RBP11.38□□□□□ -0.59
CUX1-216ENST00000558469 GABPAQ06546 454 aa11.38□□□□□ -0.59
CUX1-216ENST00000558469 TRDNQ13061 729 aa11.38□□□□□ -0.59
CUX1-216ENST00000558469 KRT32Q14532 448 aa11.38□□□□□ -0.59
CUX1-216ENST00000558469 ADCK5Q3MIX3 580 aa11.38□□□□□ -0.59
CUX1-216ENST00000558469 TSGA10IPQ3SY00 556 aa11.38□□□□□ -0.59
CUX1-216ENST00000558469 SUPT20HL1Q3ZLR7 823 aa11.38□□□□□ -0.59
CUX1-216ENST00000558469 RRP12Q5JTH9 1297 aaKnown RBP11.38□□□□□ -0.59
CUX1-216ENST00000558469 STOX1Q6ZVD7 989 aa11.38□□□□□ -0.59
CUX1-216ENST00000558469 METTL16Q86W50 562 aaKnown RBP11.38□□□□□ -0.59
CUX1-216ENST00000558469 SP7Q8TDD2 431 aaPredicted RBP11.38□□□□□ -0.59
CUX1-216ENST00000558469 HOOK2Q96ED9 719 aa11.38□□□□□ -0.59
CUX1-216ENST00000558469 CDCA5Q96FF9 252 aa11.38□□□□□ -0.59
CUX1-216ENST00000558469 RNF41Q9H4P4 317 aaPredicted RBP11.38□□□□□ -0.59
CUX1-216ENST00000558469 DNAJC18Q9H819 358 aa11.38□□□□□ -0.59
CUX1-216ENST00000558469 ZNF287Q9HBT7 754 aa11.38□□□□□ -0.59
CUX1-216ENST00000558469 SWAP70Q9UH65 585 aa11.38□□□□□ -0.59
CUX1-216ENST00000558469 HERC5Q9UII4 1024 aaKnown RBP11.38□□□□□ -0.59
CUX1-216ENST00000558469 DOCK1Q14185 1865 aa11.38□□□□□ -0.59
CUX1-216ENST00000558469 NEDD4P46934 1319 aa11.37□□□□□ -0.59
CUX1-216ENST00000558469 C19orf67A6NJJ6 358 aa11.37□□□□□ -0.59
CUX1-216ENST00000558469 TRAF5O00463 557 aa11.37□□□□□ -0.59
CUX1-216ENST00000558469 TBC1D12O60347 775 aa11.37□□□□□ -0.59
CUX1-216ENST00000558469 FGRP09769 529 aa11.37□□□□□ -0.59
CUX1-216ENST00000558469 PCP11498 1178 aaKnown RBP11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms