RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 TRIM75PA6NK02 468 aa13.4□□□□□ -0.26
SYNE2-227ENST00000557307 EN2P19622 333 aaPredicted RBP13.4□□□□□ -0.26
SYNE2-227ENST00000557307 TREML2Q5T2D2 321 aa13.4□□□□□ -0.26
SYNE2-227ENST00000557307 C20orf194Q5TEA3 1177 aa13.4□□□□□ -0.26
SYNE2-227ENST00000557307 NAA16Q6N069 864 aaPredicted RBP13.4□□□□□ -0.26
SYNE2-227ENST00000557307 GADL1Q6ZQY3 521 aa13.4□□□□□ -0.26
SYNE2-227ENST00000557307 MAPKAPK5Q8IW41 473 aa13.4□□□□□ -0.26
SYNE2-227ENST00000557307 ZNF333Q96JL9 665 aa13.4□□□□□ -0.26
SYNE2-227ENST00000557307 IL1RAPL2Q9NP60 686 aa13.4□□□□□ -0.26
SYNE2-227ENST00000557307 COG6Q9Y2V7 657 aa13.4□□□□□ -0.26
SYNE2-227ENST00000557307 MYH8P13535 1937 aa13.4□□□□□ -0.26
SYNE2-227ENST00000557307 FLT1P17948 1338 aa13.39□□□□□ -0.27
SYNE2-227ENST00000557307 BAZ2AQ9UIF9 1905 aaKnown RBP13.39□□□□□ -0.27
SYNE2-227ENST00000557307 BCRP11274 1271 aa13.39□□□□□ -0.27
SYNE2-227ENST00000557307 GSTO1P78417 241 aa13.39□□□□□ -0.27
SYNE2-227ENST00000557307 CCDC158Q5M9N0 1113 aa13.39□□□□□ -0.27
SYNE2-227ENST00000557307 TGFBRAP1Q8WUH2 860 aa13.39□□□□□ -0.27
SYNE2-227ENST00000557307 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.39□□□□□ -0.27
SYNE2-227ENST00000557307 APBB1O00213 710 aa13.38□□□□□ -0.27
SYNE2-227ENST00000557307 CXCL11O14625 94 aa13.38□□□□□ -0.27
SYNE2-227ENST00000557307 CTNND1O60716 968 aaKnown RBP13.38□□□□□ -0.27
SYNE2-227ENST00000557307 NPM3O75607 178 aaKnown RBP13.38□□□□□ -0.27
SYNE2-227ENST00000557307 LDHCP07864 332 aa13.38□□□□□ -0.27
SYNE2-227ENST00000557307 OSBPP22059 807 aa13.38□□□□□ -0.27
SYNE2-227ENST00000557307 EVX2Q03828 476 aa13.38□□□□□ -0.27
SYNE2-227ENST00000557307 ZNF512BQ96KM6 892 aaPredicted RBP13.38□□□□□ -0.27
SYNE2-227ENST00000557307 PICK1Q9NRD5 415 aa13.38□□□□□ -0.27
SYNE2-227ENST00000557307 SAP30BPQ9UHR5 308 aaKnown RBP13.38□□□□□ -0.27
SYNE2-227ENST00000557307 TBC1D12O60347 775 aa13.37□□□□□ -0.27
SYNE2-227ENST00000557307 PSMC4P43686 418 aa13.37□□□□□ -0.27
SYNE2-227ENST00000557307 SLC9C1Q4G0N8 1177 aa13.37□□□□□ -0.27
SYNE2-227ENST00000557307 AACSQ86V21 672 aa13.37□□□□□ -0.27
SYNE2-227ENST00000557307 MIGA1Q8NAN2 632 aa13.37□□□□□ -0.27
SYNE2-227ENST00000557307 PALD1Q9ULE6 856 aa13.37□□□□□ -0.27
SYNE2-227ENST00000557307 GABRQQ9UN88 632 aa13.37□□□□□ -0.27
SYNE2-227ENST00000557307 ALPK3Q96L96 1907 aa13.37□□□□□ -0.27
SYNE2-227ENST00000557307 PEX10O60683 326 aa13.36□□□□□ -0.27
SYNE2-227ENST00000557307 IDH1O75874 414 aaKnown RBP13.36□□□□□ -0.27
SYNE2-227ENST00000557307 GDF11O95390 407 aa13.36□□□□□ -0.27
SYNE2-227ENST00000557307 CHGBP05060 677 aa13.36□□□□□ -0.27
SYNE2-227ENST00000557307 CYP7A1P22680 504 aa13.36□□□□□ -0.27
SYNE2-227ENST00000557307 CAP2P40123 477 aa13.36□□□□□ -0.27
SYNE2-227ENST00000557307 PPP4CP60510 307 aa13.36□□□□□ -0.27
SYNE2-227ENST00000557307 PRKCZQ05513 592 aa13.36□□□□□ -0.27
SYNE2-227ENST00000557307 MTFR1Q15390 333 aa13.36□□□□□ -0.27
SYNE2-227ENST00000557307 SLFNL1Q499Z3 407 aa13.36□□□□□ -0.27
SYNE2-227ENST00000557307 RHPN1Q8TCX5 695 aa13.36□□□□□ -0.27
SYNE2-227ENST00000557307 EDC3Q96F86 508 aaKnown RBP13.36□□□□□ -0.27
SYNE2-227ENST00000557307 BCL11AQ9H165 835 aa13.36□□□□□ -0.27
SYNE2-227ENST00000557307 ZBTB40Q9NUA8 1239 aa13.36□□□□□ -0.27
SYNE2-227ENST00000557307 HMGCS2P54868 508 aa13.35□□□□□ -0.27
SYNE2-227ENST00000557307 SPP2Q13103 211 aa13.35□□□□□ -0.27
SYNE2-227ENST00000557307 MAGEB6Q8N7X4 407 aa13.35□□□□□ -0.27
SYNE2-227ENST00000557307 SHISA4Q96DD7 197 aa13.35□□□□□ -0.27
SYNE2-227ENST00000557307 PARK7Q99497 189 aaKnown RBP13.35□□□□□ -0.27
SYNE2-227ENST00000557307 SRRDQ9UH36 339 aa13.35□□□□□ -0.27
SYNE2-227ENST00000557307 MYPNQ86TC9 1320 aa13.35□□□□□ -0.27
SYNE2-227ENST00000557307 FMNL1O95466 1100 aaPredicted RBP13.34□□□□□ -0.27
SYNE2-227ENST00000557307 KIF22Q14807 665 aa13.34□□□□□ -0.27
SYNE2-227ENST00000557307 AGTPBP1Q9UPW5 1226 aa13.34□□□□□ -0.27
SYNE2-227ENST00000557307 PARP14Q460N5 1801 aa13.34□□□□□ -0.27
SYNE2-227ENST00000557307 BAG3O95817 575 aa13.33□□□□□ -0.28
SYNE2-227ENST00000557307 MAP4K4O95819 1239 aaPredicted RBP13.33□□□□□ -0.28
SYNE2-227ENST00000557307 PRPF38BQ5VTL8 546 aaKnown RBP13.33□□□□□ -0.28
SYNE2-227ENST00000557307 FASTKD5Q7L8L6 764 aaKnown RBP13.33□□□□□ -0.28
SYNE2-227ENST00000557307 METTL16Q86W50 562 aaKnown RBP13.33□□□□□ -0.28
SYNE2-227ENST00000557307 NOL10Q9BSC4 688 aaKnown RBP13.33□□□□□ -0.28
SYNE2-227ENST00000557307 RCAN3Q9UKA8 241 aa13.33□□□□□ -0.28
SYNE2-227ENST00000557307 RLFQ13129 1914 aa13.33□□□□□ -0.28
SYNE2-227ENST00000557307 FRMPD3Q5JV73 1810 aa13.32□□□□□ -0.28
SYNE2-227ENST00000557307 SLC34A2O95436 690 aa13.32□□□□□ -0.28
SYNE2-227ENST00000557307 MTMR2Q13614 643 aa13.32□□□□□ -0.28
SYNE2-227ENST00000557307 ANKRD13CQ8N6S4 541 aa13.32□□□□□ -0.28
SYNE2-227ENST00000557307 ZNF280CQ8ND82 737 aa13.32□□□□□ -0.28
SYNE2-227ENST00000557307 RIOK1Q9BRS2 568 aaKnown RBP13.32□□□□□ -0.28
SYNE2-227ENST00000557307 PI4KBQ9UBF8 816 aa13.32□□□□□ -0.28
SYNE2-227ENST00000557307 HERC5Q9UII4 1024 aaKnown RBP13.32□□□□□ -0.28
SYNE2-227ENST00000557307 DDX19BQ9UMR2 479 aa13.32□□□□□ -0.28
SYNE2-227ENST00000557307 A0A0G2JMZ2 1700 aa13.31□□□□□ -0.28
SYNE2-227ENST00000557307 USP17L5A8MUK1 530 aa13.31□□□□□ -0.28
SYNE2-227ENST00000557307 SMIM22K7EJ46 135 aa13.31□□□□□ -0.28
SYNE2-227ENST00000557307 SMARCA5O60264 1052 aaPredicted RBP13.31□□□□□ -0.28
SYNE2-227ENST00000557307 ELNP15502 786 aa13.31□□□□□ -0.28
SYNE2-227ENST00000557307 SH3D19Q5HYK7 790 aa13.31□□□□□ -0.28
SYNE2-227ENST00000557307 POTEEQ6S8J3 1075 aa13.31□□□□□ -0.28
SYNE2-227ENST00000557307 ERC1Q8IUD2 1116 aa13.31□□□□□ -0.28
SYNE2-227ENST00000557307 DNAJC2Q99543 621 aaKnown RBP13.31□□□□□ -0.28
SYNE2-227ENST00000557307 ZBTB21Q9ULJ3 1066 aa13.31□□□□□ -0.28
SYNE2-227ENST00000557307 SLC45A1Q9Y2W3 748 aa13.31□□□□□ -0.28
SYNE2-227ENST00000557307 TCRBV5S4A2TA0A5A2 114 aa13.3□□□□□ -0.28
SYNE2-227ENST00000557307 GOLIM4O00461 696 aa13.3□□□□□ -0.28
SYNE2-227ENST00000557307 PDE6AP16499 860 aa13.3□□□□□ -0.28
SYNE2-227ENST00000557307 PLCG2P16885 1265 aa13.3□□□□□ -0.28
SYNE2-227ENST00000557307 GRK4P32298 578 aa13.3□□□□□ -0.28
SYNE2-227ENST00000557307 PLCD1P51178 756 aa13.3□□□□□ -0.28
SYNE2-227ENST00000557307 FCGRTP55899 365 aa13.3□□□□□ -0.28
SYNE2-227ENST00000557307 ARHGEF6Q15052 776 aa13.3□□□□□ -0.28
SYNE2-227ENST00000557307 RPAP2Q8IXW5 612 aaPredicted RBP13.3□□□□□ -0.28
SYNE2-227ENST00000557307 LCORLQ8N3X6 602 aa13.3□□□□□ -0.28
SYNE2-227ENST00000557307 PROCA1Q8NCQ7 364 aaPredicted RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms