RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, human

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SLIRP-208	ENST00000556956	GNE	Q9Y223	722 aa	Known RBP	3.88	□□□□□ -1.79
SLIRP-208	ENST00000556956	NOP58	Q9Y2X3	529 aa	Known RBP	3.88	□□□□□ -1.79
SLIRP-208	ENST00000556956	CC2D2A	Q9P2K1	1620 aa		3.88	□□□□□ -1.79
SLIRP-208	ENST00000556956	ARAP1	Q96P48	1450 aa		3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	ATAD2B	Q9ULI0	1458 aa		3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956		A0A096LPE4	126 aa		3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956		A0A1W2PPZ6	126 aa		3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	SOX1	O00570	391 aa	Predicted RBP	3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	TRPA1	O75762	1119 aa		3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	GLDC	P23378	1020 aa		3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	AOC3	Q16853	763 aa		3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	EXOSC6	Q5RKV6	272 aa	Known RBP	3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	KIAA0319	Q5VV43	1072 aa		3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	VN1R5	Q7Z5H4	357 aa		3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	CCNJL	Q8IV13	435 aa		3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	SIN3A	Q96ST3	1273 aa		3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	YIPF2	Q9BWQ6	316 aa		3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	RBCK1	Q9BYM8	510 aa		3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	XYLT2	Q9H1B5	865 aa		3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	EHD4	Q9H223	541 aa		3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	CLEC4M	Q9H2X3	399 aa	Predicted RBP	3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	LIN7B	Q9HAP6	207 aa		3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	NLRP2	Q9NX02	1062 aa		3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	BIN2	Q9UBW5	565 aa	Predicted RBP	3.87	□□□□□ -1.79
SLIRP-208	ENST00000556956	PRX	Q9BXM0	1461 aa		3.86	□□□□□ -1.79
SLIRP-208	ENST00000556956	ERICH3	Q5RHP9	1530 aa		3.86	□□□□□ -1.79
SLIRP-208	ENST00000556956	SOWAHD	A6NJG2	315 aa		3.86	□□□□□ -1.79
SLIRP-208	ENST00000556956	DYNC1LI2	O43237	492 aa	Predicted RBP	3.86	□□□□□ -1.79
SLIRP-208	ENST00000556956	ESRRA	P11474	423 aa	Predicted RBP	3.86	□□□□□ -1.79
SLIRP-208	ENST00000556956	TGM1	P22735	817 aa		3.86	□□□□□ -1.79
SLIRP-208	ENST00000556956	PLCB3	Q01970	1234 aa		3.86	□□□□□ -1.79
SLIRP-208	ENST00000556956	GSTM4	Q03013	218 aa		3.86	□□□□□ -1.79
SLIRP-208	ENST00000556956	PTPN12	Q05209	780 aa	Known RBP	3.86	□□□□□ -1.79
SLIRP-208	ENST00000556956	ANGEL2	Q5VTE6	544 aa	Known RBP	3.86	□□□□□ -1.79
SLIRP-208	ENST00000556956	PEAR1	Q5VY43	1037 aa	Predicted RBP	3.86	□□□□□ -1.79
SLIRP-208	ENST00000556956	OGFOD3	Q6PK18	319 aa		3.86	□□□□□ -1.79
SLIRP-208	ENST00000556956	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	3.86	□□□□□ -1.79
SLIRP-208	ENST00000556956	ALKBH8	Q96BT7	664 aa	Known RBP	3.86	□□□□□ -1.79
SLIRP-208	ENST00000556956	FAM129B	Q96TA1	746 aa		3.86	□□□□□ -1.79
SLIRP-208	ENST00000556956	C1GALT1	Q9NS00	363 aa		3.86	□□□□□ -1.79
SLIRP-208	ENST00000556956	MAP3K1	Q13233	1512 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	BIVM-ERCC5	R4GMW8	1640 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956		A0A1W2PP55	124 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	EIF1AY	O14602	144 aa	Known RBP	3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	GADD45B	O75293	160 aa	Predicted RBP	3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	POLR3D	P05423	398 aa	Predicted RBP	3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	XRCC5	P13010	732 aa	Known RBP	3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	ACPP	P15309	386 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	RAB6A	P20340	208 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	ANP32A	P39687	249 aa	Known RBP	3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	AFM	P43652	599 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	ZXDA	P98168	799 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	PCDH1	Q08174	1060 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	EFEMP1	Q12805	493 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	FAM50A	Q14320	339 aa	Known RBP	3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	TMEM67	Q5HYA8	995 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	SLC16A11	Q8NCK7	471 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	CCDC74A	Q96AQ1	378 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	KIRREL1	Q96J84	757 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	HHIP	Q96QV1	700 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	USP26	Q9BXU7	913 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	NIF3L1	Q9GZT8	377 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	SEMA6C	Q9H3T2	930 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	DCTN4	Q9UJW0	460 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	MYRF	Q9Y2G1	1151 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	TONSL	Q96HA7	1378 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	MAPKBP1	O60336	1514 aa		3.85	□□□□□ -1.79
SLIRP-208	ENST00000556956	OTOL1	A6NHN0	477 aa	Predicted RBP	3.84	□□□□□ -1.79
SLIRP-208	ENST00000556956	PPP2R3A	Q06190	1150 aa		3.84	□□□□□ -1.79
SLIRP-208	ENST00000556956	SOX4	Q06945	474 aa	Predicted RBP	3.84	□□□□□ -1.79
SLIRP-208	ENST00000556956	KCNA1	Q09470	495 aa		3.84	□□□□□ -1.79
SLIRP-208	ENST00000556956	AP3B2	Q13367	1082 aa		3.84	□□□□□ -1.79
SLIRP-208	ENST00000556956	SEZ6L2	Q6UXD5	910 aa		3.84	□□□□□ -1.79
SLIRP-208	ENST00000556956	IPO9	Q96P70	1041 aa	Known RBP	3.84	□□□□□ -1.79
SLIRP-208	ENST00000556956	TCF12	Q99081	682 aa		3.84	□□□□□ -1.79
SLIRP-208	ENST00000556956	CORO1B	Q9BR76	489 aa		3.84	□□□□□ -1.79
SLIRP-208	ENST00000556956	DCP1A	Q9NPI6	582 aa	Predicted RBP	3.84	□□□□□ -1.79
SLIRP-208	ENST00000556956	LATS2	Q9NRM7	1088 aa		3.84	□□□□□ -1.79
SLIRP-208	ENST00000556956	RAD18	Q9NS91	495 aa		3.84	□□□□□ -1.79
SLIRP-208	ENST00000556956	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	3.84	□□□□□ -1.79
SLIRP-208	ENST00000556956	KIF27	Q86VH2	1401 aa		3.84	□□□□□ -1.79
SLIRP-208	ENST00000556956	NCAPD3	P42695	1498 aa		3.84	□□□□□ -1.8
SLIRP-208	ENST00000556956	SYNJ1	O43426	1573 aa		3.84	□□□□□ -1.8
SLIRP-208	ENST00000556956	LOC100289279	A0A1B0GTE1	492 aa		3.83	□□□□□ -1.8
SLIRP-208	ENST00000556956	SLFN14	P0C7P3	912 aa		3.83	□□□□□ -1.8
SLIRP-208	ENST00000556956	ITPKA	P23677	461 aa		3.83	□□□□□ -1.8
SLIRP-208	ENST00000556956	MAPK1	P28482	360 aa		3.83	□□□□□ -1.8
SLIRP-208	ENST00000556956	GRIA4	P48058	902 aa		3.83	□□□□□ -1.8
SLIRP-208	ENST00000556956	IRX6	P78412	446 aa	Predicted RBP	3.83	□□□□□ -1.8
SLIRP-208	ENST00000556956	FGD1	P98174	961 aa		3.83	□□□□□ -1.8
SLIRP-208	ENST00000556956	ORC1	Q13415	861 aa		3.83	□□□□□ -1.8
SLIRP-208	ENST00000556956	MAP7	Q14244	749 aa		3.83	□□□□□ -1.8
SLIRP-208	ENST00000556956	POU4F3	Q15319	338 aa		3.83	□□□□□ -1.8
SLIRP-208	ENST00000556956	SPATS1	Q496A3	300 aa		3.83	□□□□□ -1.8
SLIRP-208	ENST00000556956	SORCS2	Q96PQ0	1159 aa		3.83	□□□□□ -1.8
SLIRP-208	ENST00000556956	NPHS2	Q9NP85	383 aa		3.83	□□□□□ -1.8
SLIRP-208	ENST00000556956	USP35	Q9P2H5	1018 aa		3.83	□□□□□ -1.8
SLIRP-208	ENST00000556956	ACTL7B	Q9Y614	415 aa		3.83	□□□□□ -1.8

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