RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	PXYLP1	Q8TE99	480 aa		10.87	□□□□□ -0.67
SYNE2-222	ENST00000556725	GDF15	Q99988	308 aa		10.87	□□□□□ -0.67
SYNE2-222	ENST00000556725	CRISPLD2	Q9H0B8	497 aa		10.87	□□□□□ -0.67
SYNE2-222	ENST00000556725	PAK6	Q9NQU5	681 aa	Predicted RBP	10.87	□□□□□ -0.67
SYNE2-222	ENST00000556725	USP40	Q9NVE5	1235 aa		10.87	□□□□□ -0.67
SYNE2-222	ENST00000556725	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	10.87	□□□□□ -0.67
SYNE2-222	ENST00000556725	TAOK2	Q9UL54	1235 aa		10.87	□□□□□ -0.67
SYNE2-222	ENST00000556725	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	10.87	□□□□□ -0.67
SYNE2-222	ENST00000556725	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.87	□□□□□ -0.67
SYNE2-222	ENST00000556725	BOLA1	Q9Y3E2	137 aa		10.87	□□□□□ -0.67
SYNE2-222	ENST00000556725	AFG3L2	Q9Y4W6	797 aa		10.87	□□□□□ -0.67
SYNE2-222	ENST00000556725	LAMA2	P24043	3122 aa	Known RBP	10.87	□□□□□ -0.67
SYNE2-222	ENST00000556725	UTY	O14607	1347 aa		10.86	□□□□□ -0.67
SYNE2-222	ENST00000556725	PTPRA	P18433	802 aa		10.86	□□□□□ -0.67
SYNE2-222	ENST00000556725	PRDX5	P30044	214 aa		10.86	□□□□□ -0.67
SYNE2-222	ENST00000556725	IRF5	Q13568	498 aa		10.86	□□□□□ -0.67
SYNE2-222	ENST00000556725	FASTKD5	Q7L8L6	764 aa	Known RBP	10.86	□□□□□ -0.67
SYNE2-222	ENST00000556725	CCDC84	Q86UT8	332 aa	Predicted RBP	10.86	□□□□□ -0.67
SYNE2-222	ENST00000556725	WDR63	Q8IWG1	891 aa		10.86	□□□□□ -0.67
SYNE2-222	ENST00000556725	C7orf61	Q8IZ16	206 aa		10.86	□□□□□ -0.67
SYNE2-222	ENST00000556725	ZNF710	Q8N1W2	664 aa		10.86	□□□□□ -0.67
SYNE2-222	ENST00000556725	DEFB123	Q8N688	67 aa		10.86	□□□□□ -0.67
SYNE2-222	ENST00000556725	WDR66	Q8TBY9	1149 aa		10.86	□□□□□ -0.67
SYNE2-222	ENST00000556725	DNAH12	Q6ZR08	3092 aa		10.85	□□□□□ -0.67
SYNE2-222	ENST00000556725	TNPO2	O14787	897 aa	Known RBP	10.85	□□□□□ -0.67
SYNE2-222	ENST00000556725	IFIT1	P09914	478 aa	Known RBP	10.85	□□□□□ -0.67
SYNE2-222	ENST00000556725	BMP8B	P34820	402 aa		10.85	□□□□□ -0.67
SYNE2-222	ENST00000556725	SH3BP5L	Q7L8J4	393 aa		10.85	□□□□□ -0.67
SYNE2-222	ENST00000556725	NECAB2	Q7Z6G3	386 aa		10.85	□□□□□ -0.67
SYNE2-222	ENST00000556725	SCYL3	Q8IZE3	742 aa		10.85	□□□□□ -0.67
SYNE2-222	ENST00000556725	ANKRD13C	Q8N6S4	541 aa		10.85	□□□□□ -0.67
SYNE2-222	ENST00000556725	ATRNL1	Q5VV63	1379 aa		10.85	□□□□□ -0.67
SYNE2-222	ENST00000556725	MYH13	Q9UKX3	1938 aa		10.85	□□□□□ -0.67
SYNE2-222	ENST00000556725	PTPRF	P10586	1907 aa		10.84	□□□□□ -0.67
SYNE2-222	ENST00000556725	SYN1	P17600	705 aa		10.84	□□□□□ -0.67
SYNE2-222	ENST00000556725	ZEB1	P37275	1124 aa	Predicted RBP	10.84	□□□□□ -0.67
SYNE2-222	ENST00000556725	RGS3	P49796	1198 aa		10.84	□□□□□ -0.67
SYNE2-222	ENST00000556725	TRIM32	Q13049	653 aa		10.84	□□□□□ -0.67
SYNE2-222	ENST00000556725	PUM3	Q15397	648 aa	Known RBP	10.84	□□□□□ -0.67
SYNE2-222	ENST00000556725	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	10.84	□□□□□ -0.67
SYNE2-222	ENST00000556725	PHIP	Q8WWQ0	1821 aa		10.84	□□□□□ -0.67
SYNE2-222	ENST00000556725	KIF16B	Q96L93	1317 aa		10.84	□□□□□ -0.67
SYNE2-222	ENST00000556725	DDTL	A6NHG4	134 aa	Predicted RBP	10.83	□□□□□ -0.68
SYNE2-222	ENST00000556725	TRIM75P	A6NK02	468 aa		10.83	□□□□□ -0.68
SYNE2-222	ENST00000556725	LDHB	P07195	334 aa	Known RBP	10.83	□□□□□ -0.68
SYNE2-222	ENST00000556725	MAGEA10	P43363	369 aa	Predicted RBP	10.83	□□□□□ -0.68
SYNE2-222	ENST00000556725	RFX5	P48382	616 aa	Predicted RBP	10.83	□□□□□ -0.68
SYNE2-222	ENST00000556725	MAP3K10	Q02779	954 aa		10.83	□□□□□ -0.68
SYNE2-222	ENST00000556725	TREML2	Q5T2D2	321 aa		10.83	□□□□□ -0.68
SYNE2-222	ENST00000556725	SMCR8	Q8TEV9	937 aa	Predicted RBP	10.83	□□□□□ -0.68
SYNE2-222	ENST00000556725	PICK1	Q9NRD5	415 aa		10.83	□□□□□ -0.68
SYNE2-222	ENST00000556725	MTMR10	Q9NXD2	777 aa		10.83	□□□□□ -0.68
SYNE2-222	ENST00000556725	SLC45A1	Q9Y2W3	748 aa		10.83	□□□□□ -0.68
SYNE2-222	ENST00000556725	SLC5A1	P13866	664 aa		10.82	□□□□□ -0.68
SYNE2-222	ENST00000556725	PDAP1	Q13442	181 aa	Known RBP	10.82	□□□□□ -0.68
SYNE2-222	ENST00000556725	LRIT3	Q3SXY7	679 aa		10.82	□□□□□ -0.68
SYNE2-222	ENST00000556725	GPR153	Q6NV75	609 aa		10.82	□□□□□ -0.68
SYNE2-222	ENST00000556725	ATG9A	Q7Z3C6	839 aa		10.82	□□□□□ -0.68
SYNE2-222	ENST00000556725	LPIN2	Q92539	896 aa		10.82	□□□□□ -0.68
SYNE2-222	ENST00000556725	COA7	Q96BR5	231 aa		10.82	□□□□□ -0.68
SYNE2-222	ENST00000556725	USP44	Q9H0E7	712 aa		10.82	□□□□□ -0.68
SYNE2-222	ENST00000556725	DDX4	Q9NQI0	724 aa	Known RBP	10.82	□□□□□ -0.68
SYNE2-222	ENST00000556725	GJD2	Q9UKL4	321 aa		10.82	□□□□□ -0.68
SYNE2-222	ENST00000556725	STXBP5L	Q9Y2K9	1186 aa		10.82	□□□□□ -0.68
SYNE2-222	ENST00000556725	MYH2	Q9UKX2	1941 aa		10.82	□□□□□ -0.68
SYNE2-222	ENST00000556725	DOCK2	Q92608	1830 aa		10.81	□□□□□ -0.68
SYNE2-222	ENST00000556725	EYS	Q5T1H1	3165 aa		10.81	□□□□□ -0.68
SYNE2-222	ENST00000556725	EYA2	O00167	538 aa		10.81	□□□□□ -0.68
SYNE2-222	ENST00000556725	CTNND1	O60716	968 aa	Known RBP	10.81	□□□□□ -0.68
SYNE2-222	ENST00000556725	ENTPD3	O75355	529 aa		10.81	□□□□□ -0.68
SYNE2-222	ENST00000556725	CAPN2	P17655	700 aa		10.81	□□□□□ -0.68
SYNE2-222	ENST00000556725	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	10.81	□□□□□ -0.68
SYNE2-222	ENST00000556725	COL25A1	Q9BXS0	654 aa	Predicted RBP	10.81	□□□□□ -0.68
SYNE2-222	ENST00000556725	IDI2	Q9BXS1	227 aa		10.81	□□□□□ -0.68
SYNE2-222	ENST00000556725	NBPF3	Q9H094	633 aa		10.81	□□□□□ -0.68
SYNE2-222	ENST00000556725	AGTPBP1	Q9UPW5	1226 aa		10.81	□□□□□ -0.68
SYNE2-222	ENST00000556725	LRRFIP2	Q9Y608	721 aa	Known RBP	10.81	□□□□□ -0.68
SYNE2-222	ENST00000556725	FAM196B	A6NMK8	535 aa		10.8	□□□□□ -0.68
SYNE2-222	ENST00000556725	PEX10	O60683	326 aa		10.8	□□□□□ -0.68
SYNE2-222	ENST00000556725	PHKA1	P46020	1223 aa		10.8	□□□□□ -0.68
SYNE2-222	ENST00000556725	PICALM	Q13492	652 aa		10.8	□□□□□ -0.68
SYNE2-222	ENST00000556725	FAM110C	Q1W6H9	321 aa		10.8	□□□□□ -0.68
SYNE2-222	ENST00000556725	TDH	Q8IZJ6	230 aa		10.8	□□□□□ -0.68
SYNE2-222	ENST00000556725	MRPL50	Q8N5N7	158 aa	Known RBP	10.8	□□□□□ -0.68
SYNE2-222	ENST00000556725	ANKLE1	Q8NAG6	615 aa		10.8	□□□□□ -0.68
SYNE2-222	ENST00000556725	C11orf49	Q9H6J7	331 aa		10.8	□□□□□ -0.68
SYNE2-222	ENST00000556725	HMX1	Q9NP08	348 aa	Predicted RBP	10.8	□□□□□ -0.68
SYNE2-222	ENST00000556725	DDX60L	Q5H9U9	1706 aa	Known RBP	10.8	□□□□□ -0.68
SYNE2-222	ENST00000556725	DOCK1	Q14185	1865 aa		10.8	□□□□□ -0.68
SYNE2-222	ENST00000556725	RPTOR	Q8N122	1335 aa		10.8	□□□□□ -0.68
SYNE2-222	ENST00000556725	CUL9	Q8IWT3	2517 aa		10.8	□□□□□ -0.68
SYNE2-222	ENST00000556725	PLXNB2	O15031	1838 aa		10.79	□□□□□ -0.68
SYNE2-222	ENST00000556725	HMGCR	P04035	888 aa		10.79	□□□□□ -0.68
SYNE2-222	ENST00000556725	ADORA1	P30542	326 aa		10.79	□□□□□ -0.68
SYNE2-222	ENST00000556725	SPP2	Q13103	211 aa		10.79	□□□□□ -0.68
SYNE2-222	ENST00000556725	RRP1B	Q14684	758 aa	Known RBP	10.79	□□□□□ -0.68
SYNE2-222	ENST00000556725	ATP2B3	Q16720	1220 aa		10.79	□□□□□ -0.68
SYNE2-222	ENST00000556725	VARS2	Q5ST30	1063 aa	Known RBP	10.79	□□□□□ -0.68
SYNE2-222	ENST00000556725	UBE2O	Q9C0C9	1292 aa	Known RBP	10.79	□□□□□ -0.68
SYNE2-222	ENST00000556725	SIL1	Q9H173	461 aa		10.79	□□□□□ -0.68

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