RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 SOX1O00570 391 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-223ENST00000556689 HMGCRP04035 888 aa15.66■□□□□ 0.1
SHMT2-223ENST00000556689 GSTO1P78417 241 aa15.66■□□□□ 0.1
SHMT2-223ENST00000556689 LRCH3Q96II8 777 aa15.66■□□□□ 0.1
SHMT2-223ENST00000556689 HMX1Q9NP08 348 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-223ENST00000556689 GJD2Q9UKL4 321 aa15.66■□□□□ 0.1
SHMT2-223ENST00000556689 RPTORQ8N122 1335 aa15.66■□□□□ 0.1
SHMT2-223ENST00000556689 FAM196BA6NMK8 535 aa15.65■□□□□ 0.1
SHMT2-223ENST00000556689 USP17L5A8MUK1 530 aa15.65■□□□□ 0.1
SHMT2-223ENST00000556689 BMP8BP34820 402 aa15.65■□□□□ 0.1
SHMT2-223ENST00000556689 CAP2P40123 477 aa15.65■□□□□ 0.1
SHMT2-223ENST00000556689 HMGCS2P54868 508 aa15.65■□□□□ 0.1
SHMT2-223ENST00000556689 TFCP2Q12800 502 aa15.65■□□□□ 0.1
SHMT2-223ENST00000556689 DIS3LQ8TF46 1054 aaKnown RBP15.65■□□□□ 0.1
SHMT2-223ENST00000556689 ZNF384Q8TF68 577 aa15.65■□□□□ 0.1
SHMT2-223ENST00000556689 NEUROD6Q96NK8 337 aa15.65■□□□□ 0.1
SHMT2-223ENST00000556689 API5Q9BZZ5 524 aaKnown RBP15.65■□□□□ 0.1
SHMT2-223ENST00000556689 NBPF3Q9H094 633 aa15.65■□□□□ 0.1
SHMT2-223ENST00000556689 ASCC2Q9H1I8 757 aaPredicted RBP15.65■□□□□ 0.1
SHMT2-223ENST00000556689 MGAMO43451 1857 aa15.64■□□□□ 0.09
SHMT2-223ENST00000556689 SH3D19Q5HYK7 790 aa15.64■□□□□ 0.09
SHMT2-223ENST00000556689 C7orf61Q8IZ16 206 aa15.64■□□□□ 0.09
SHMT2-223ENST00000556689 CDCA7LQ96GN5 454 aa15.64■□□□□ 0.09
SHMT2-223ENST00000556689 MEIS3Q99687 375 aa15.64■□□□□ 0.09
SHMT2-223ENST00000556689 GDF15Q99988 308 aa15.64■□□□□ 0.09
SHMT2-223ENST00000556689 HMG20BQ9P0W2 317 aa15.64■□□□□ 0.09
SHMT2-223ENST00000556689 MYH13Q9UKX3 1938 aa15.64■□□□□ 0.09
SHMT2-223ENST00000556689 COL6A3P12111 3177 aa15.63■□□□□ 0.09
SHMT2-223ENST00000556689 SRGAP3O43295 1099 aa15.63■□□□□ 0.09
SHMT2-223ENST00000556689 GORABQ5T7V8 394 aa15.63■□□□□ 0.09
SHMT2-223ENST00000556689 SPATA5Q8NB90 893 aa15.63■□□□□ 0.09
SHMT2-223ENST00000556689 NSUN4Q96CB9 384 aaKnown RBP15.63■□□□□ 0.09
SHMT2-223ENST00000556689 AS3MTQ9HBK9 375 aa15.63■□□□□ 0.09
SHMT2-223ENST00000556689 RAI14Q9P0K7 980 aa15.63■□□□□ 0.09
SHMT2-223ENST00000556689 MYH2Q9UKX2 1941 aa15.62■□□□□ 0.09
SHMT2-223ENST00000556689 CT47B1P0C2W7 299 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-223ENST00000556689 TRIM32Q13049 653 aa15.62■□□□□ 0.09
SHMT2-223ENST00000556689 RRP1BQ14684 758 aaKnown RBP15.62■□□□□ 0.09
SHMT2-223ENST00000556689 GPR153Q6NV75 609 aa15.62■□□□□ 0.09
SHMT2-223ENST00000556689 TBC1D9Q6ZT07 1266 aa15.62■□□□□ 0.09
SHMT2-223ENST00000556689 TEX11Q8IYF3 940 aa15.62■□□□□ 0.09
SHMT2-223ENST00000556689 TRMT2AQ8IZ69 625 aaKnown RBP15.62■□□□□ 0.09
SHMT2-223ENST00000556689 C11orf49Q9H6J7 331 aa15.62■□□□□ 0.09
SHMT2-223ENST00000556689 PI4KBQ9UBF8 816 aa15.62■□□□□ 0.09
SHMT2-223ENST00000556689 MORF4L1Q9UBU8 362 aa15.62■□□□□ 0.09
SHMT2-223ENST00000556689 HERC5Q9UII4 1024 aaKnown RBP15.62■□□□□ 0.09
SHMT2-223ENST00000556689 ZMYND8Q9ULU4 1186 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-223ENST00000556689 LAMA3Q16787 3333 aa15.62■□□□□ 0.09
SHMT2-223ENST00000556689 A0A0C4DFX4 3053 aa15.61■□□□□ 0.09
SHMT2-223ENST00000556689 GNAI3P08754 354 aa15.61■□□□□ 0.09
SHMT2-223ENST00000556689 CYP2B6P20813 491 aa15.61■□□□□ 0.09
SHMT2-223ENST00000556689 WDR18Q9BV38 432 aa15.61■□□□□ 0.09
SHMT2-223ENST00000556689 TMOD4Q9NZQ9 345 aa15.61■□□□□ 0.09
SHMT2-223ENST00000556689 LRP2BPQ9P2M1 347 aa15.61■□□□□ 0.09
SHMT2-223ENST00000556689 OGDHLQ9ULD0 1010 aa15.61■□□□□ 0.09
SHMT2-223ENST00000556689 DOCK2Q92608 1830 aa15.61■□□□□ 0.09
SHMT2-223ENST00000556689 HOXA7P31268 230 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-223ENST00000556689 MNX1P50219 401 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-223ENST00000556689 BACE1P56817 501 aa15.6■□□□□ 0.09
SHMT2-223ENST00000556689 IRX3P78415 501 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-223ENST00000556689 PI16Q6UXB8 463 aa15.6■□□□□ 0.09
SHMT2-223ENST00000556689 GPRC5AQ8NFJ5 357 aa15.6■□□□□ 0.09
SHMT2-223ENST00000556689 P2RX7Q99572 595 aaKnown RBP15.6■□□□□ 0.09
SHMT2-223ENST00000556689 NOL10Q9BSC4 688 aaKnown RBP15.6■□□□□ 0.09
SHMT2-223ENST00000556689 DHX36Q9H2U1 1008 aaKnown RBP15.6■□□□□ 0.09
SHMT2-223ENST00000556689 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-223ENST00000556689 BAG3O95817 575 aa15.59■□□□□ 0.09
SHMT2-223ENST00000556689 ASNSP08243 561 aa15.59■□□□□ 0.09
SHMT2-223ENST00000556689 XRCC5P13010 732 aaKnown RBP15.59■□□□□ 0.09
SHMT2-223ENST00000556689 SYN1P17600 705 aa15.59■□□□□ 0.09
SHMT2-223ENST00000556689 ARID4AP29374 1257 aaPredicted RBP15.59■□□□□ 0.09
SHMT2-223ENST00000556689 MTX1Q13505 466 aa15.59■□□□□ 0.09
SHMT2-223ENST00000556689 MTMR2Q13614 643 aa15.59■□□□□ 0.09
SHMT2-223ENST00000556689 DEFB123Q8N688 67 aa15.59■□□□□ 0.09
SHMT2-223ENST00000556689 SH3RF3Q8TEJ3 882 aaPredicted RBP15.59■□□□□ 0.09
SHMT2-223ENST00000556689 TRIB2Q92519 343 aa15.59■□□□□ 0.09
SHMT2-223ENST00000556689 NUDT12Q9BQG2 462 aa15.59■□□□□ 0.09
SHMT2-223ENST00000556689 DOCK1Q14185 1865 aa15.59■□□□□ 0.09
SHMT2-223ENST00000556689 COL2A1P02458 1487 aaPredicted RBP15.59■□□□□ 0.09
SHMT2-223ENST00000556689 C19orf81C9J6K1 198 aa15.58■□□□□ 0.08
SHMT2-223ENST00000556689 UQCRFS1P1P0C7P4 283 aa15.58■□□□□ 0.08
SHMT2-223ENST00000556689 PRKAR2AP13861 404 aaKnown RBP15.58■□□□□ 0.08
SHMT2-223ENST00000556689 PLCG2P16885 1265 aa15.58■□□□□ 0.08
SHMT2-223ENST00000556689 MAGEA10P43363 369 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-223ENST00000556689 G3BP1Q13283 466 aaKnown RBP eCLIP15.58■□□□□ 0.088e-8■■■□□ 16.6
SHMT2-223ENST00000556689 LRIT3Q3SXY7 679 aa15.58■□□□□ 0.08
SHMT2-223ENST00000556689 MAP3K21Q5TCX8 1036 aa15.58■□□□□ 0.08
SHMT2-223ENST00000556689 FOXP4Q8IVH2 680 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-223ENST00000556689 CCAR1Q8IX12 1150 aaKnown RBP15.58■□□□□ 0.08
SHMT2-223ENST00000556689 TRMT44Q8IYL2 757 aaKnown RBP15.58■□□□□ 0.08
SHMT2-223ENST00000556689 SOCS4Q8WXH5 440 aa15.58■□□□□ 0.08
SHMT2-223ENST00000556689 ARHGAP45Q92619 1136 aa15.58■□□□□ 0.08
SHMT2-223ENST00000556689 PHIPQ8WWQ0 1821 aa15.58■□□□□ 0.08
SHMT2-223ENST00000556689 DOCK3Q8IZD9 2030 aa15.58■□□□□ 0.08
SHMT2-223ENST00000556689 USP17L10C9JJH3 530 aa15.57■□□□□ 0.08
SHMT2-223ENST00000556689 MAPK4P31152 587 aa15.57■□□□□ 0.08
SHMT2-223ENST00000556689 MCAMP43121 646 aa15.57■□□□□ 0.08
SHMT2-223ENST00000556689 HERVK_113P62684 666 aa15.57■□□□□ 0.08
SHMT2-223ENST00000556689 PDE3AQ14432 1141 aa15.57■□□□□ 0.08
SHMT2-223ENST00000556689 NAA16Q6N069 864 aaPredicted RBP15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms