RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 KRTAP19-4Q3LI73 84 aa7.5□□□□□ -1.21
SCFD1-216ENST00000555550 NXPE4Q6UWF7 544 aa7.5□□□□□ -1.21
SCFD1-216ENST00000555550 MPZL3Q6UWV2 235 aa7.5□□□□□ -1.21
SCFD1-216ENST00000555550 LCNL1Q6ZST4 164 aa7.5□□□□□ -1.21
SCFD1-216ENST00000555550 SYDE1Q6ZW31 735 aaPredicted RBP7.5□□□□□ -1.21
SCFD1-216ENST00000555550 TOX2Q96NM4 488 aa7.5□□□□□ -1.21
SCFD1-216ENST00000555550 PICK1Q9NRD5 415 aa7.5□□□□□ -1.21
SCFD1-216ENST00000555550 C1QL4Q86Z23 238 aa7.49□□□□□ -1.21
SCFD1-216ENST00000555550 EMILIN2Q9BXX0 1053 aa7.49□□□□□ -1.21
SCFD1-216ENST00000555550 KRTAP4-11Q9BYQ6 195 aa7.49□□□□□ -1.21
SCFD1-216ENST00000555550 PITPNM2Q9BZ72 1349 aa7.49□□□□□ -1.21
SCFD1-216ENST00000555550 GNAT3A8MTJ3 354 aa7.48□□□□□ -1.21
SCFD1-216ENST00000555550 RBAK-RBAKDNI3L0D1 243 aa7.48□□□□□ -1.21
SCFD1-216ENST00000555550 CYFIP1Q7L576 1253 aa7.48□□□□□ -1.21
SCFD1-216ENST00000555550 LRRC56Q8IYG6 542 aaPredicted RBP7.48□□□□□ -1.21
SCFD1-216ENST00000555550 CARS2Q9HA77 564 aaKnown RBP7.48□□□□□ -1.21
SCFD1-216ENST00000555550 CNTNAP4Q9C0A0 1308 aa7.48□□□□□ -1.21
SCFD1-216ENST00000555550 TSPAN15O95858 294 aa7.47□□□□□ -1.21
SCFD1-216ENST00000555550 GLI1P08151 1106 aa7.47□□□□□ -1.21
SCFD1-216ENST00000555550 C1QTNF9P0C862 333 aa7.47□□□□□ -1.21
SCFD1-216ENST00000555550 XRCC5P13010 732 aaKnown RBP7.47□□□□□ -1.21
SCFD1-216ENST00000555550 BMP6P22004 513 aa7.47□□□□□ -1.21
SCFD1-216ENST00000555550 TMEM67Q5HYA8 995 aa7.47□□□□□ -1.21
SCFD1-216ENST00000555550 B4GALNT3Q6L9W6 998 aa7.47□□□□□ -1.21
SCFD1-216ENST00000555550 CDC37L1Q7L3B6 337 aa7.47□□□□□ -1.21
SCFD1-216ENST00000555550 ANKLE2Q86XL3 938 aa7.47□□□□□ -1.21
SCFD1-216ENST00000555550 KIRREL1Q96J84 757 aa7.47□□□□□ -1.21
SCFD1-216ENST00000555550 DMRTB1Q96MA1 342 aa7.47□□□□□ -1.21
SCFD1-216ENST00000555550 HSPA12BQ96MM6 686 aa7.47□□□□□ -1.21
SCFD1-216ENST00000555550 KCNK12Q9HB15 430 aa7.47□□□□□ -1.21
SCFD1-216ENST00000555550 ATP13A1Q9HD20 1204 aa7.47□□□□□ -1.21
SCFD1-216ENST00000555550 CACNA2D2Q9NY47 1150 aa7.47□□□□□ -1.21
SCFD1-216ENST00000555550 PRR33A8MZF0 331 aa7.46□□□□□ -1.22
SCFD1-216ENST00000555550 PAGE1O75459 146 aa7.46□□□□□ -1.22
SCFD1-216ENST00000555550 RING1Q06587 406 aa7.46□□□□□ -1.22
SCFD1-216ENST00000555550 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.46□□□□□ -1.22
SCFD1-216ENST00000555550 CDKAL1Q5VV42 579 aa7.46□□□□□ -1.22
SCFD1-216ENST00000555550 TPTE2Q6XPS3 522 aa7.46□□□□□ -1.22
SCFD1-216ENST00000555550 ZSCAN18Q8TBC5 510 aaPredicted RBP7.46□□□□□ -1.22
SCFD1-216ENST00000555550 ALKBH8Q96BT7 664 aaKnown RBP7.46□□□□□ -1.22
SCFD1-216ENST00000555550 NECAB3Q96P71 396 aaPredicted RBP7.46□□□□□ -1.22
SCFD1-216ENST00000555550 PRDM5Q9NQX1 630 aaPredicted RBP7.46□□□□□ -1.22
SCFD1-216ENST00000555550 C19orf73Q9NVV2 129 aa7.46□□□□□ -1.22
SCFD1-216ENST00000555550 LMCD1Q9NZU5 365 aa7.46□□□□□ -1.22
SCFD1-216ENST00000555550 KRT1P04264 644 aa7.45□□□□□ -1.22
SCFD1-216ENST00000555550 ZSCAN22P10073 491 aaPredicted RBP7.45□□□□□ -1.22
SCFD1-216ENST00000555550 CLCN7P51798 805 aa7.45□□□□□ -1.22
SCFD1-216ENST00000555550 ZBTB37Q5TC79 503 aa7.45□□□□□ -1.22
SCFD1-216ENST00000555550 LILRA6Q6PI73 481 aa7.45□□□□□ -1.22
SCFD1-216ENST00000555550 TXNDC2Q86VQ3 553 aa7.45□□□□□ -1.22
SCFD1-216ENST00000555550 CCER1Q8TC90 406 aaPredicted RBP7.45□□□□□ -1.22
SCFD1-216ENST00000555550 DIRC2Q96SL1 478 aa7.45□□□□□ -1.22
SCFD1-216ENST00000555550 PPP1R16BQ96T49 567 aa7.45□□□□□ -1.22
SCFD1-216ENST00000555550 RBCK1Q9BYM8 510 aa7.45□□□□□ -1.22
SCFD1-216ENST00000555550 SEMA3GQ9NS98 782 aa7.45□□□□□ -1.22
SCFD1-216ENST00000555550 USTQ9Y2C2 406 aa7.45□□□□□ -1.22
SCFD1-216ENST00000555550 FANCGO15287 622 aa7.44□□□□□ -1.22
SCFD1-216ENST00000555550 FBXO24O75426 580 aa7.44□□□□□ -1.22
SCFD1-216ENST00000555550 RASIP1Q5U651 963 aa7.44□□□□□ -1.22
SCFD1-216ENST00000555550 ARMCX6Q7L4S7 300 aa7.44□□□□□ -1.22
SCFD1-216ENST00000555550 C3orf58Q8NDZ4 430 aa7.44□□□□□ -1.22
SCFD1-216ENST00000555550 FOXQ1Q9C009 403 aa7.44□□□□□ -1.22
SCFD1-216ENST00000555550 PCDHA4Q9UN74 947 aa7.44□□□□□ -1.22
SCFD1-216ENST00000555550 FAM155AB1AL88 458 aaPredicted RBP7.43□□□□□ -1.22
SCFD1-216ENST00000555550 ENC1O14682 589 aa7.43□□□□□ -1.22
SCFD1-216ENST00000555550 SLITRK5O94991 958 aa7.43□□□□□ -1.22
SCFD1-216ENST00000555550 TMC7Q7Z402 723 aa7.43□□□□□ -1.22
SCFD1-216ENST00000555550 H3BS24 57 aa7.42□□□□□ -1.22
SCFD1-216ENST00000555550 TRIM37O94972 964 aa7.42□□□□□ -1.22
SCFD1-216ENST00000555550 NSUN3Q9H649 340 aaKnown RBP7.42□□□□□ -1.22
SCFD1-216ENST00000555550 TPX2Q9ULW0 747 aaKnown RBP7.42□□□□□ -1.22
SCFD1-216ENST00000555550 PNMA6FA0A0J9YX94 578 aa7.41□□□□□ -1.22
SCFD1-216ENST00000555550 NFIBO00712 420 aa7.41□□□□□ -1.22
SCFD1-216ENST00000555550 GDNFP39905 211 aa7.41□□□□□ -1.22
SCFD1-216ENST00000555550 INPP5AQ14642 412 aa7.41□□□□□ -1.22
SCFD1-216ENST00000555550 NPAS4Q8IUM7 802 aa7.41□□□□□ -1.22
SCFD1-216ENST00000555550 SIAH1Q8IUQ4 282 aa7.41□□□□□ -1.22
SCFD1-216ENST00000555550 RIN3Q8TB24 985 aa7.41□□□□□ -1.22
SCFD1-216ENST00000555550 MAPK8IP1Q9UQF2 711 aa7.41□□□□□ -1.22
SCFD1-216ENST00000555550 LRIG2O94898 1065 aa7.4□□□□□ -1.22
SCFD1-216ENST00000555550 FGD1P98174 961 aa7.4□□□□□ -1.22
SCFD1-216ENST00000555550 LLGL2Q6P1M3 1020 aa7.4□□□□□ -1.22
SCFD1-216ENST00000555550 FBXO15Q8NCQ5 510 aaPredicted RBP7.4□□□□□ -1.22
SCFD1-216ENST00000555550 ELMO3Q96BJ8 720 aa7.4□□□□□ -1.22
SCFD1-216ENST00000555550 FBRSQ9HAH7 460 aa7.4□□□□□ -1.22
SCFD1-216ENST00000555550 NPIPB6E9PJ23 425 aa7.39□□□□□ -1.23
SCFD1-216ENST00000555550 PLCB3Q01970 1234 aa7.39□□□□□ -1.23
SCFD1-216ENST00000555550 PTPN11Q06124 597 aaPredicted RBP7.39□□□□□ -1.23
SCFD1-216ENST00000555550 PDE4CQ08493 712 aa7.39□□□□□ -1.23
SCFD1-216ENST00000555550 SFRP5Q5T4F7 317 aa7.39□□□□□ -1.23
SCFD1-216ENST00000555550 RETREG2Q8NC44 543 aa7.39□□□□□ -1.23
SCFD1-216ENST00000555550 KCT2Q8NC54 265 aa7.39□□□□□ -1.23
SCFD1-216ENST00000555550 ZNF507Q8TCN5 953 aa7.39□□□□□ -1.23
SCFD1-216ENST00000555550 MIPEPQ99797 713 aa7.39□□□□□ -1.23
SCFD1-216ENST00000555550 SAMM50Q9Y512 469 aa7.39□□□□□ -1.23
SCFD1-216ENST00000555550 PRAMEF27A3QJZ7 478 aa7.38□□□□□ -1.23
SCFD1-216ENST00000555550 CBX7O95931 251 aa7.38□□□□□ -1.23
SCFD1-216ENST00000555550 TMEM253P0C7T8 217 aa7.38□□□□□ -1.23
SCFD1-216ENST00000555550 SLBPQ14493 270 aaKnown RBP eCLIP7.38□□□□□ -1.23
SCFD1-216ENST00000555550 NKG7Q16617 165 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms