RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 NECAB2Q7Z6G3 386 aa13.45□□□□□ -0.26
SHMT2-216ENST00000554975 SIRT2Q8IXJ6 389 aa13.45□□□□□ -0.26
SHMT2-216ENST00000554975 TDHQ8IZJ6 230 aa13.45□□□□□ -0.26
SHMT2-216ENST00000554975 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.45□□□□□ -0.266e-7■□□□□ 9.5
SHMT2-216ENST00000554975 TMOD2Q9NZR1 351 aa13.45□□□□□ -0.26
SHMT2-216ENST00000554975 TAOK2Q9UL54 1235 aa13.45□□□□□ -0.26
SHMT2-216ENST00000554975 MYH2Q9UKX2 1941 aa13.45□□□□□ -0.26
SHMT2-216ENST00000554975 CDH23Q9H251 3354 aa13.45□□□□□ -0.26
SHMT2-216ENST00000554975 FRMPD3Q5JV73 1810 aa13.44□□□□□ -0.26
SHMT2-216ENST00000554975 SLURP2P0DP57 97 aa13.44□□□□□ -0.26
SHMT2-216ENST00000554975 NFIAQ12857 509 aa13.44□□□□□ -0.26
SHMT2-216ENST00000554975 TRIM32Q13049 653 aa13.44□□□□□ -0.26
SHMT2-216ENST00000554975 IRF5Q13568 498 aa13.44□□□□□ -0.26
SHMT2-216ENST00000554975 TTC22Q5TAA0 569 aa13.44□□□□□ -0.26
SHMT2-216ENST00000554975 IL27Q8NEV9 243 aa13.44□□□□□ -0.26
SHMT2-216ENST00000554975 HOOK2Q96ED9 719 aa13.44□□□□□ -0.26
SHMT2-216ENST00000554975 SUCLG2Q96I99 432 aa13.44□□□□□ -0.26
SHMT2-216ENST00000554975 GUCD1Q96NT3 240 aa13.44□□□□□ -0.26
SHMT2-216ENST00000554975 ATAD5Q96QE3 1844 aa13.43□□□□□ -0.26
SHMT2-216ENST00000554975 A0A0G2JLL6 359 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-216ENST00000554975 TNPO2O14787 897 aaKnown RBP13.43□□□□□ -0.26
SHMT2-216ENST00000554975 NBPF7P0C2Y1 421 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-216ENST00000554975 DNAH12Q6ZR08 3092 aa13.43□□□□□ -0.26
SHMT2-216ENST00000554975 PRRT2Q7Z6L0 340 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-216ENST00000554975 ZFPM1Q8IX07 1006 aa13.43□□□□□ -0.26
SHMT2-216ENST00000554975 TBC1D22AQ8WUA7 517 aa13.43□□□□□ -0.26
SHMT2-216ENST00000554975 FAM151AQ8WW52 585 aa13.43□□□□□ -0.26
SHMT2-216ENST00000554975 KAZALD1Q96I82 304 aa13.43□□□□□ -0.26
SHMT2-216ENST00000554975 MEIS3Q99687 375 aa13.43□□□□□ -0.26
SHMT2-216ENST00000554975 MRIQ9BWK5 157 aa13.43□□□□□ -0.26
SHMT2-216ENST00000554975 TBC1D2Q9BYX2 928 aa13.43□□□□□ -0.26
SHMT2-216ENST00000554975 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-216ENST00000554975 CIZ1Q9ULV3 898 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-216ENST00000554975 ATRNL1Q5VV63 1379 aa13.43□□□□□ -0.26
SHMT2-216ENST00000554975 LOC285556D6RIA3 1793 aa13.43□□□□□ -0.26
SHMT2-216ENST00000554975 CXCL11O14625 94 aa13.42□□□□□ -0.26
SHMT2-216ENST00000554975 PTMSP20962 102 aa13.42□□□□□ -0.26
SHMT2-216ENST00000554975 LRRC24Q50LG9 513 aa13.42□□□□□ -0.26
SHMT2-216ENST00000554975 GADL1Q6ZQY3 521 aa13.42□□□□□ -0.26
SHMT2-216ENST00000554975 UBE2OQ9C0C9 1292 aaKnown RBP13.42□□□□□ -0.26
SHMT2-216ENST00000554975 CHMP5Q9NZZ3 219 aa13.42□□□□□ -0.26
SHMT2-216ENST00000554975 FAM198AQ9UFP1 575 aa13.42□□□□□ -0.26
SHMT2-216ENST00000554975 COL2A1P02458 1487 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-216ENST00000554975 RPTORQ8N122 1335 aa13.41□□□□□ -0.26
SHMT2-216ENST00000554975 PHF20L1A8MW92 1017 aa13.41□□□□□ -0.26
SHMT2-216ENST00000554975 FRAT2O75474 233 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-216ENST00000554975 REC8O95072 547 aa13.41□□□□□ -0.26
SHMT2-216ENST00000554975 SLC4A3P48751 1232 aa13.41□□□□□ -0.26
SHMT2-216ENST00000554975 DIXDC1Q155Q3 683 aa13.41□□□□□ -0.26
SHMT2-216ENST00000554975 CDC42EP5Q6NZY7 148 aa13.41□□□□□ -0.26
SHMT2-216ENST00000554975 HHIPL2Q6UWX4 724 aa13.41□□□□□ -0.26
SHMT2-216ENST00000554975 TBC1D9Q6ZT07 1266 aa13.41□□□□□ -0.26
SHMT2-216ENST00000554975 CCDC84Q86UT8 332 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-216ENST00000554975 VPS37DQ86XT2 251 aa13.41□□□□□ -0.26
SHMT2-216ENST00000554975 PLEKHM2Q8IWE5 1019 aa13.41□□□□□ -0.26
SHMT2-216ENST00000554975 VGLL2Q8N8G2 317 aa13.41□□□□□ -0.26
SHMT2-216ENST00000554975 FAM161BQ96MY7 647 aa13.41□□□□□ -0.26
SHMT2-216ENST00000554975 OSBPL3Q9H4L5 887 aa13.41□□□□□ -0.26
SHMT2-216ENST00000554975 BICC1Q9H694 974 aaKnown RBP13.41□□□□□ -0.26
SHMT2-216ENST00000554975 DAGLAQ9Y4D2 1042 aa13.41□□□□□ -0.26
SHMT2-216ENST00000554975 ZHX2Q9Y6X8 837 aa13.41□□□□□ -0.26
SHMT2-216ENST00000554975 PFASO15067 1338 aa13.4□□□□□ -0.26
SHMT2-216ENST00000554975 MAST2Q6P0Q8 1798 aa13.4□□□□□ -0.26
SHMT2-216ENST00000554975 MUC3AQ02505 3323 aa13.4□□□□□ -0.26
SHMT2-216ENST00000554975 ANKRD13CQ8N6S4 541 aa13.4□□□□□ -0.26
SHMT2-216ENST00000554975 ANKLE1Q8NAG6 615 aa13.4□□□□□ -0.26
SHMT2-216ENST00000554975 NBPF3Q9H094 633 aa13.4□□□□□ -0.26
SHMT2-216ENST00000554975 AFG3L2Q9Y4W6 797 aa13.4□□□□□ -0.26
SHMT2-216ENST00000554975 UTYO14607 1347 aa13.39□□□□□ -0.27
SHMT2-216ENST00000554975 LTBP2Q14767 1821 aa13.39□□□□□ -0.27
SHMT2-216ENST00000554975 UBTFL1P0CB47 393 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-216ENST00000554975 CAPN2P17655 700 aa13.39□□□□□ -0.27
SHMT2-216ENST00000554975 PTPRAP18433 802 aa13.39□□□□□ -0.27
SHMT2-216ENST00000554975 HSP90AB4PQ58FF6 505 aa13.39□□□□□ -0.27
SHMT2-216ENST00000554975 FASTKD5Q7L8L6 764 aaKnown RBP13.39□□□□□ -0.27
SHMT2-216ENST00000554975 SCYL3Q8IZE3 742 aa13.39□□□□□ -0.27
SHMT2-216ENST00000554975 USP44Q9H0E7 712 aa13.39□□□□□ -0.27
SHMT2-216ENST00000554975 C11orf49Q9H6J7 331 aa13.39□□□□□ -0.27
SHMT2-216ENST00000554975 MAST3O60307 1309 aa13.39□□□□□ -0.27
SHMT2-216ENST00000554975 MROH5Q6ZUA9 1318 aa13.39□□□□□ -0.27
SHMT2-216ENST00000554975 POTEB2H3BUK9 544 aa13.38□□□□□ -0.27
SHMT2-216ENST00000554975 HMGCRP04035 888 aa13.38□□□□□ -0.27
SHMT2-216ENST00000554975 MDM2Q00987 491 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-216ENST00000554975 RABEP1Q15276 862 aa13.38□□□□□ -0.27
SHMT2-216ENST00000554975 TREML2Q5T2D2 321 aa13.38□□□□□ -0.27
SHMT2-216ENST00000554975 SH3BP5LQ7L8J4 393 aa13.38□□□□□ -0.27
SHMT2-216ENST00000554975 SMCR8Q8TEV9 937 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-216ENST00000554975 COA7Q96BR5 231 aa13.38□□□□□ -0.27
SHMT2-216ENST00000554975 LRRCC1Q9C099 1032 aa13.38□□□□□ -0.27
SHMT2-216ENST00000554975 ANTXR1Q9H6X2 564 aa13.38□□□□□ -0.27
SHMT2-216ENST00000554975 SLC45A1Q9Y2W3 748 aa13.38□□□□□ -0.27
SHMT2-216ENST00000554975 SUGT1Q9Y2Z0 365 aa13.38□□□□□ -0.27
SHMT2-216ENST00000554975 DDX11L8A8MPP1 907 aa13.37□□□□□ -0.27
SHMT2-216ENST00000554975 EPB41L2O43491 1005 aaKnown RBP13.37□□□□□ -0.27
SHMT2-216ENST00000554975 RAB11FIP3O75154 756 aa13.37□□□□□ -0.27
SHMT2-216ENST00000554975 PDE8BO95263 885 aa13.37□□□□□ -0.27
SHMT2-216ENST00000554975 PRDX5P30044 214 aa13.37□□□□□ -0.27
SHMT2-216ENST00000554975 CAVIN4Q5BKX8 364 aa13.37□□□□□ -0.27
SHMT2-216ENST00000554975 METTL24Q5JXM2 366 aa13.37□□□□□ -0.27
SHMT2-216ENST00000554975 KLHDC4Q8TBB5 520 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms