RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 PRR29P0C7W0 189 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 TRIM28Q13263 835 aaKnown RBP10.88□□□□□ -0.67
SYNE2-213ENST00000554805 AKNAD1Q5T1N1 836 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 PPFIBP1Q86W92 1011 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 MAP3K14Q99558 947 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 KRT23Q9C075 422 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 KCND1Q9NSA2 647 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 ABCF2Q9UG63 623 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 hCG_1642624A0A1W2PR95 340 aa10.87□□□□□ -0.67
SYNE2-213ENST00000554805 SEC31AO94979 1220 aaKnown RBP10.87□□□□□ -0.67
SYNE2-213ENST00000554805 SPATA5Q8NB90 893 aa10.87□□□□□ -0.67
SYNE2-213ENST00000554805 ZBTB9Q96C00 473 aa10.87□□□□□ -0.67
SYNE2-213ENST00000554805 ZNF446Q9NWS9 450 aa10.87□□□□□ -0.67
SYNE2-213ENST00000554805 PHRF1Q9P1Y6 1649 aaKnown RBP10.87□□□□□ -0.67
SYNE2-213ENST00000554805 PUM3Q15397 648 aaKnown RBP10.87□□□□□ -0.67
SYNE2-213ENST00000554805 CCDC12Q8WUD4 166 aaPredicted RBP10.87□□□□□ -0.67
SYNE2-213ENST00000554805 PIGBQ92521 554 aa10.87□□□□□ -0.67
SYNE2-213ENST00000554805 SRRTQ9BXP5 876 aaKnown RBP10.87□□□□□ -0.67
SYNE2-213ENST00000554805 HSD3B7Q9H2F3 369 aa10.87□□□□□ -0.67
SYNE2-213ENST00000554805 CNNM2Q9H8M5 875 aa10.87□□□□□ -0.67
SYNE2-213ENST00000554805 PCDHB6Q9Y5E3 794 aa10.87□□□□□ -0.67
SYNE2-213ENST00000554805 PHLPP2Q6ZVD8 1323 aa10.87□□□□□ -0.67
SYNE2-213ENST00000554805 CCDC66A2RUB6 948 aa10.86□□□□□ -0.67
SYNE2-213ENST00000554805 FMNL1O95466 1100 aaPredicted RBP10.86□□□□□ -0.67
SYNE2-213ENST00000554805 KCNJ6P48051 423 aa10.86□□□□□ -0.67
SYNE2-213ENST00000554805 NTRK3Q16288 839 aa10.86□□□□□ -0.67
SYNE2-213ENST00000554805 SPECC1LQ69YQ0 1117 aa10.86□□□□□ -0.67
SYNE2-213ENST00000554805 LPIN2Q92539 896 aa10.86□□□□□ -0.67
SYNE2-213ENST00000554805 SAMSN1Q9NSI8 373 aaKnown RBP10.86□□□□□ -0.67
SYNE2-213ENST00000554805 FAM217BQ9NTX9 383 aaPredicted RBP10.86□□□□□ -0.67
SYNE2-213ENST00000554805 SIPA1L3O60292 1781 aaPredicted RBP10.86□□□□□ -0.67
SYNE2-213ENST00000554805 SCN11AQ9UI33 1791 aa10.86□□□□□ -0.67
SYNE2-213ENST00000554805 TNS3Q68CZ2 1445 aa10.86□□□□□ -0.67
SYNE2-213ENST00000554805 CCDC196A0A1B0GTZ2 297 aa10.86□□□□□ -0.67
SYNE2-213ENST00000554805 PDE8AO60658 829 aa10.86□□□□□ -0.67
SYNE2-213ENST00000554805 FMR1Q06787 632 aaKnown RBP eCLIP10.86□□□□□ -0.67
SYNE2-213ENST00000554805 RILPL1Q5EBL4 403 aa10.86□□□□□ -0.67
SYNE2-213ENST00000554805 REXO1L1PQ8IX06 675 aa10.86□□□□□ -0.67
SYNE2-213ENST00000554805 MLKLQ8NB16 471 aa10.86□□□□□ -0.67
SYNE2-213ENST00000554805 ACSBG1Q96GR2 724 aa10.86□□□□□ -0.67
SYNE2-213ENST00000554805 PLA2G12BQ9BX93 195 aa10.86□□□□□ -0.67
SYNE2-213ENST00000554805 LZTFL1Q9NQ48 299 aa10.86□□□□□ -0.67
SYNE2-213ENST00000554805 CEP131Q9UPN4 1083 aa10.86□□□□□ -0.67
SYNE2-213ENST00000554805 MMP1P03956 469 aa10.86□□□□□ -0.67
SYNE2-213ENST00000554805 IFNAR1P17181 557 aa10.86□□□□□ -0.67
SYNE2-213ENST00000554805 EPB41L4AQ9HCS5 686 aaPredicted RBP10.86□□□□□ -0.67
SYNE2-213ENST00000554805 TPM1P09493 284 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 PNMA6AP0CW24 399 aaPredicted RBP10.85□□□□□ -0.67
SYNE2-213ENST00000554805 H2AFXP16104 143 aaPredicted RBP10.85□□□□□ -0.67
SYNE2-213ENST00000554805 XBP1P17861 261 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 BMP6P22004 513 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 LIFRP42702 1097 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 PPP2R3AQ06190 1150 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 CCDC93Q567U6 631 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 FAM182BQ5T319 152 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 TOGARAM2Q6ZUX3 1019 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 USP49Q70CQ1 688 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 WDR24Q96S15 920 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.85□□□□□ -0.67
SYNE2-213ENST00000554805 RAI14Q9P0K7 980 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 ARFGEF2Q9Y6D5 1785 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 GOLGA6L9A6NEM1 432 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 DEXIO95424 95 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 TRIM65Q6PJ69 517 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 SGMS1Q86VZ5 419 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 DZIP3Q86Y13 1208 aaKnown RBP10.85□□□□□ -0.67
SYNE2-213ENST00000554805 LCORLQ8N3X6 602 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 OXER1Q8TDS5 423 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 CARD10Q9BWT7 1032 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 CSRNP2Q9H175 543 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 ZBTB1Q9Y2K1 713 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 TRIM75PA6NK02 468 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 CYP7A1P22680 504 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 PTPREP23469 700 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 BCAMP50895 628 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 RASGRF1Q13972 1273 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 STAMQ92783 540 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 VPS54Q9P1Q0 977 aa10.85□□□□□ -0.67
SYNE2-213ENST00000554805 MST1RQ04912 1400 aa10.84□□□□□ -0.67
SYNE2-213ENST00000554805 ABCC12Q96J65 1359 aa10.84□□□□□ -0.67
SYNE2-213ENST00000554805 LAMA4Q16363 1823 aa10.84□□□□□ -0.67
SYNE2-213ENST00000554805 VWA3AA6NCI4 1184 aa10.84□□□□□ -0.67
SYNE2-213ENST00000554805 COBLO75128 1261 aa10.84□□□□□ -0.67
SYNE2-213ENST00000554805 CASP1P29466 404 aa10.84□□□□□ -0.67
SYNE2-213ENST00000554805 TOB1P50616 345 aaPredicted RBP10.84□□□□□ -0.67
SYNE2-213ENST00000554805 FILIP1LQ4L180 1135 aa10.84□□□□□ -0.67
SYNE2-213ENST00000554805 KANK3Q6NY19 840 aa10.84□□□□□ -0.67
SYNE2-213ENST00000554805 ZNF654Q8IZM8 581 aa10.84□□□□□ -0.67
SYNE2-213ENST00000554805 INTS13Q9NVM9 706 aa10.84□□□□□ -0.67
SYNE2-213ENST00000554805 EFCAB8A8MWE9 144 aa10.84□□□□□ -0.67
SYNE2-213ENST00000554805 AKR1B15C9JRZ8 316 aaPredicted RBP10.84□□□□□ -0.67
SYNE2-213ENST00000554805 PES1O00541 588 aaKnown RBP10.84□□□□□ -0.67
SYNE2-213ENST00000554805 MYO1BO43795 1136 aa10.84□□□□□ -0.67
SYNE2-213ENST00000554805 TADA3O75528 432 aa10.84□□□□□ -0.67
SYNE2-213ENST00000554805 PRDM1O75626 825 aa10.84□□□□□ -0.67
SYNE2-213ENST00000554805 RNF41Q9H4P4 317 aaPredicted RBP10.84□□□□□ -0.67
SYNE2-213ENST00000554805 SEC31BQ9NQW1 1179 aa10.84□□□□□ -0.67
SYNE2-213ENST00000554805 FBXO2Q9UK22 296 aaPredicted RBP10.84□□□□□ -0.67
SYNE2-213ENST00000554805 GSG1L2A8MUP6 293 aa10.83□□□□□ -0.67
SYNE2-213ENST00000554805 STX10O60499 249 aa10.83□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms