RNA–Protein interactions for RNA: ENST00000554486.1

SCFD1-212, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-212ENST00000554486 PDE3BQ13370 1112 aa8.37□□□□□ -1.07
SCFD1-212ENST00000554486 EIF4A2Q14240 407 aaKnown RBP8.37□□□□□ -1.07
SCFD1-212ENST00000554486 PCSK7Q16549 785 aa8.37□□□□□ -1.07
SCFD1-212ENST00000554486 ZNF438Q7Z4V0 828 aa8.37□□□□□ -1.07
SCFD1-212ENST00000554486 C1orf127Q8N9H9 656 aa8.37□□□□□ -1.07
SCFD1-212ENST00000554486 PNISRQ8TF01 805 aaKnown RBP8.37□□□□□ -1.07
SCFD1-212ENST00000554486 DMRTB1Q96MA1 342 aa8.37□□□□□ -1.07
SCFD1-212ENST00000554486 PRDM11Q9NQV5 511 aa8.37□□□□□ -1.07
SCFD1-212ENST00000554486 RGPD2P0DJD1 1756 aa8.37□□□□□ -1.07
SCFD1-212ENST00000554486 RGPD1P0DJD0 1748 aa8.37□□□□□ -1.07
SCFD1-212ENST00000554486 BLMP54132 1417 aaPredicted RBP8.37□□□□□ -1.07
SCFD1-212ENST00000554486 SPDYE3A6NKU9 549 aa8.36□□□□□ -1.07
SCFD1-212ENST00000554486 ZBTB42B2RXF5 422 aa8.36□□□□□ -1.07
SCFD1-212ENST00000554486 DIAPH1O60610 1272 aaKnown RBP8.36□□□□□ -1.07
SCFD1-212ENST00000554486 ZSCAN29Q8IWY8 852 aaPredicted RBP8.36□□□□□ -1.07
SCFD1-212ENST00000554486 UBE2OQ9C0C9 1292 aaKnown RBP8.36□□□□□ -1.07
SCFD1-212ENST00000554486 IGFLR1Q9H665 355 aa8.36□□□□□ -1.07
SCFD1-212ENST00000554486 CCDC9Q9Y3X0 531 aaKnown RBP8.36□□□□□ -1.07
SCFD1-212ENST00000554486 PLCH1Q4KWH8 1693 aa8.36□□□□□ -1.07
SCFD1-212ENST00000554486 P4HBP07237 508 aaKnown RBP8.35□□□□□ -1.07
SCFD1-212ENST00000554486 RARAP10276 462 aa8.35□□□□□ -1.07
SCFD1-212ENST00000554486 TAGLNQ01995 201 aaKnown RBP8.35□□□□□ -1.07
SCFD1-212ENST00000554486 COL13A1Q5TAT6 717 aaPredicted RBP8.35□□□□□ -1.07
SCFD1-212ENST00000554486 USPL1Q5W0Q7 1092 aa8.35□□□□□ -1.07
SCFD1-212ENST00000554486 FBXO33Q7Z6M2 555 aa8.35□□□□□ -1.07
SCFD1-212ENST00000554486 OR13H1Q8NG92 308 aa8.35□□□□□ -1.07
SCFD1-212ENST00000554486 ANKRD24Q8TF21 1146 aa8.35□□□□□ -1.07
SCFD1-212ENST00000554486 LTV1Q96GA3 475 aaPredicted RBP8.35□□□□□ -1.07
SCFD1-212ENST00000554486 ABI2Q9NYB9 513 aaPredicted RBP8.35□□□□□ -1.07
SCFD1-212ENST00000554486 TLR7Q9NYK1 1049 aaKnown RBP8.35□□□□□ -1.07
SCFD1-212ENST00000554486 NRAPQ86VF7 1730 aa8.34□□□□□ -1.07
SCFD1-212ENST00000554486 COL5A2P05997 1499 aaPredicted RBP8.34□□□□□ -1.07
SCFD1-212ENST00000554486 PLCB3Q01970 1234 aa8.34□□□□□ -1.07
SCFD1-212ENST00000554486 TBC1D8BQ0IIM8 1120 aa8.34□□□□□ -1.07
SCFD1-212ENST00000554486 GPAT2Q6NUI2 795 aa8.34□□□□□ -1.07
SCFD1-212ENST00000554486 SETDB2Q96T68 719 aa8.34□□□□□ -1.07
SCFD1-212ENST00000554486 ZFYVE28Q9HCC9 887 aa8.34□□□□□ -1.07
SCFD1-212ENST00000554486 NWD2Q9ULI1 1742 aa8.34□□□□□ -1.07
SCFD1-212ENST00000554486 SLIT2O94813 1529 aa8.34□□□□□ -1.08
SCFD1-212ENST00000554486 FAM208AQ9UK61 1670 aaKnown RBP8.34□□□□□ -1.08
SCFD1-212ENST00000554486 IGSF1Q8N6C5 1336 aa8.33□□□□□ -1.08
SCFD1-212ENST00000554486 M0R082 166 aa8.33□□□□□ -1.08
SCFD1-212ENST00000554486 EREGO14944 169 aa8.33□□□□□ -1.08
SCFD1-212ENST00000554486 U2SURPO15042 1029 aaKnown RBP8.33□□□□□ -1.08
SCFD1-212ENST00000554486 HOXD8P13378 290 aaPredicted RBP8.33□□□□□ -1.08
SCFD1-212ENST00000554486 NCAPD2Q15021 1401 aa8.33□□□□□ -1.08
SCFD1-212ENST00000554486 WDR43Q15061 677 aaKnown RBP eCLIP8.33□□□□□ -1.08
SCFD1-212ENST00000554486 NBPF6Q5VWK0 638 aa8.33□□□□□ -1.08
SCFD1-212ENST00000554486 DHX32Q7L7V1 743 aaKnown RBP8.33□□□□□ -1.08
SCFD1-212ENST00000554486 FAM9BQ8IZU0 186 aa8.33□□□□□ -1.08
SCFD1-212ENST00000554486 ZNF417Q8TAU3 575 aa8.33□□□□□ -1.08
SCFD1-212ENST00000554486 SNX29Q8TEQ0 813 aa8.33□□□□□ -1.08
SCFD1-212ENST00000554486 NBPF4Q96M43 638 aa8.33□□□□□ -1.08
SCFD1-212ENST00000554486 ZNF587Q96SQ5 575 aaPredicted RBP8.33□□□□□ -1.08
SCFD1-212ENST00000554486 SUV39H2Q9H5I1 410 aa8.33□□□□□ -1.08
SCFD1-212ENST00000554486 PRDM6Q9NQX0 595 aa8.33□□□□□ -1.08
SCFD1-212ENST00000554486 BTG4Q9NY30 223 aa8.33□□□□□ -1.08
SCFD1-212ENST00000554486 WWC3Q9ULE0 1092 aa8.33□□□□□ -1.08
SCFD1-212ENST00000554486 NUDCQ9Y266 331 aa8.33□□□□□ -1.08
SCFD1-212ENST00000554486 WDR17Q8IZU2 1322 aa8.32□□□□□ -1.08
SCFD1-212ENST00000554486 EIF1AYO14602 144 aaKnown RBP8.32□□□□□ -1.08
SCFD1-212ENST00000554486 U2AF1L5P0DN76 240 aaPredicted RBP8.32□□□□□ -1.08
SCFD1-212ENST00000554486 ERCC3P19447 782 aa8.32□□□□□ -1.08
SCFD1-212ENST00000554486 COL8A1P27658 744 aa8.32□□□□□ -1.08
SCFD1-212ENST00000554486 U2AF1Q01081 240 aaKnown RBP eCLIP8.32□□□□□ -1.088e-6■■□□□ 11.7
SCFD1-212ENST00000554486 ENOX2Q16206 610 aaKnown RBP8.32□□□□□ -1.08
SCFD1-212ENST00000554486 PLA2G4EQ3MJ16 856 aa8.32□□□□□ -1.08
SCFD1-212ENST00000554486 MICALL1Q8N3F8 863 aa8.32□□□□□ -1.08
SCFD1-212ENST00000554486 TRPM4Q8TD43 1214 aa8.32□□□□□ -1.08
SCFD1-212ENST00000554486 FOXD4L4Q8WXT5 416 aaPredicted RBP8.32□□□□□ -1.08
SCFD1-212ENST00000554486 C8orf37Q96NL8 207 aa8.32□□□□□ -1.08
SCFD1-212ENST00000554486 CSRNP1Q96S65 589 aa8.32□□□□□ -1.08
SCFD1-212ENST00000554486 PLVAPQ9BX97 442 aa8.32□□□□□ -1.08
SCFD1-212ENST00000554486 BCL9LQ86UU0 1499 aa8.32□□□□□ -1.08
SCFD1-212ENST00000554486 MSTNO14793 375 aa8.31□□□□□ -1.08
SCFD1-212ENST00000554486 LILRB5O75023 590 aa8.31□□□□□ -1.08
SCFD1-212ENST00000554486 HMOX1P09601 288 aa8.31□□□□□ -1.08
SCFD1-212ENST00000554486 SOX18P35713 384 aa8.31□□□□□ -1.08
SCFD1-212ENST00000554486 EVA1CP58658 441 aa8.31□□□□□ -1.08
SCFD1-212ENST00000554486 COL19A1Q14993 1142 aa8.31□□□□□ -1.08
SCFD1-212ENST00000554486 MEX3CQ5U5Q3 659 aaKnown RBP8.31□□□□□ -1.08
SCFD1-212ENST00000554486 TTC39BQ5VTQ0 682 aaPredicted RBP8.31□□□□□ -1.08
SCFD1-212ENST00000554486 SULT6B1Q6IMI4 303 aa8.31□□□□□ -1.08
SCFD1-212ENST00000554486 USHBP1Q8N6Y0 703 aa8.31□□□□□ -1.08
SCFD1-212ENST00000554486 TTC16Q8NEE8 873 aa8.31□□□□□ -1.08
SCFD1-212ENST00000554486 PLEKHF1Q96S99 279 aa8.31□□□□□ -1.08
SCFD1-212ENST00000554486 DNAJB12Q9NXW2 375 aaKnown RBP8.31□□□□□ -1.08
SCFD1-212ENST00000554486 SALL4Q9UJQ4 1053 aa8.31□□□□□ -1.08
SCFD1-212ENST00000554486 SLC6A14Q9UN76 642 aa8.31□□□□□ -1.08
SCFD1-212ENST00000554486 STARD13Q9Y3M8 1113 aa8.31□□□□□ -1.08
SCFD1-212ENST00000554486 KDRP35968 1356 aa8.31□□□□□ -1.08
SCFD1-212ENST00000554486 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.31□□□□□ -1.08
SCFD1-212ENST00000554486 PHACTR2O75167 634 aa8.3□□□□□ -1.08
SCFD1-212ENST00000554486 POLR3DP05423 398 aaPredicted RBP8.3□□□□□ -1.08
SCFD1-212ENST00000554486 PRRT3Q5FWE3 981 aa8.3□□□□□ -1.08
SCFD1-212ENST00000554486 UNC5CLQ8IV45 518 aa8.3□□□□□ -1.08
SCFD1-212ENST00000554486 CARD10Q9BWT7 1032 aa8.3□□□□□ -1.08
SCFD1-212ENST00000554486 RNF19AQ9NV58 838 aa8.3□□□□□ -1.08
SCFD1-212ENST00000554486 NLRP2Q9NX02 1062 aa8.3□□□□□ -1.08
SCFD1-212ENST00000554486 KANSL3Q9P2N6 904 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms