RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 CCDC114Q96M63 670 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 NAPGQ99747 312 aaPredicted RBP10.79□□□□□ -0.68
SIX4-202ENST00000554079 NUP58Q9BVL2 599 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 EPN3Q9H201 632 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 CEMIPQ8WUJ3 1361 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 ADGRB3O60242 1522 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 PNMA6EA0A0J9YXQ4 647 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 OPLAHO14841 1288 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 MYO1BO43795 1136 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 HMGB1P09429 215 aaKnown RBP10.79□□□□□ -0.68
SIX4-202ENST00000554079 CD151P48509 253 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 ADKP55263 362 aaKnown RBP10.79□□□□□ -0.68
SIX4-202ENST00000554079 AKAP17AQ02040 695 aaKnown RBP10.79□□□□□ -0.68
SIX4-202ENST00000554079 AMOTQ4VCS5 1084 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 TTMPQ5BVD1 217 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 PUS7Q96PZ0 661 aaKnown RBP10.79□□□□□ -0.68
SIX4-202ENST00000554079 SPAG5Q96R06 1193 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 EPAS1Q99814 870 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 SDF4Q9BRK5 362 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 YIPF3Q9GZM5 350 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 RGL1Q9NZL6 768 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 C15orf41Q9Y2V0 281 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 U3KPZ7 1027 aaPredicted RBP10.79□□□□□ -0.68
SIX4-202ENST00000554079 FAM208AQ9UK61 1670 aaKnown RBP10.78□□□□□ -0.68
SIX4-202ENST00000554079 A0A1W2PP64 1363 aa10.78□□□□□ -0.68
SIX4-202ENST00000554079 MAP3K5Q99683 1374 aa10.78□□□□□ -0.68
SIX4-202ENST00000554079 PPFIA3O75145 1194 aa10.78□□□□□ -0.68
SIX4-202ENST00000554079 GNAI2P04899 355 aa10.78□□□□□ -0.68
SIX4-202ENST00000554079 NDUFA8P51970 172 aa10.78□□□□□ -0.68
SIX4-202ENST00000554079 ROR2Q01974 943 aaKnown RBP10.78□□□□□ -0.68
SIX4-202ENST00000554079 MYL5Q02045 173 aa10.78□□□□□ -0.68
SIX4-202ENST00000554079 XRCC4Q13426 336 aa10.78□□□□□ -0.68
SIX4-202ENST00000554079 SF3A1Q15459 793 aaKnown RBP10.78□□□□□ -0.68
SIX4-202ENST00000554079 NCAPH2Q6IBW4 605 aa10.78□□□□□ -0.68
SIX4-202ENST00000554079 RAD9BQ6WBX8 426 aa10.78□□□□□ -0.68
SIX4-202ENST00000554079 GSPT2Q8IYD1 628 aaKnown RBP10.78□□□□□ -0.68
SIX4-202ENST00000554079 STAMBPL1Q96FJ0 436 aa10.78□□□□□ -0.68
SIX4-202ENST00000554079 CDC5LQ99459 802 aaKnown RBP10.78□□□□□ -0.68
SIX4-202ENST00000554079 TSGA10Q9BZW7 698 aa10.78□□□□□ -0.68
SIX4-202ENST00000554079 MIS18AQ9NYP9 233 aa10.78□□□□□ -0.68
SIX4-202ENST00000554079 A0A1W2PQ27 194 aa10.77□□□□□ -0.68
SIX4-202ENST00000554079 A0A1W2PQ64 194 aa10.77□□□□□ -0.68
SIX4-202ENST00000554079 A0A1W2PQD8 194 aa10.77□□□□□ -0.68
SIX4-202ENST00000554079 A6NHS1 94 aa10.77□□□□□ -0.68
SIX4-202ENST00000554079 SOWAHDA6NJG2 315 aa10.77□□□□□ -0.68
SIX4-202ENST00000554079 DNM1LO00429 736 aa10.77□□□□□ -0.68
SIX4-202ENST00000554079 ATP6V1G2O95670 118 aa10.77□□□□□ -0.68
SIX4-202ENST00000554079 LSP1P33241 339 aa10.77□□□□□ -0.68
SIX4-202ENST00000554079 HDLBPQ00341 1268 aaKnown RBP10.77□□□□□ -0.68
SIX4-202ENST00000554079 IFT88Q13099 833 aa10.77□□□□□ -0.68
SIX4-202ENST00000554079 ANKRD1Q15327 319 aa10.77□□□□□ -0.68
SIX4-202ENST00000554079 CREB3L3Q68CJ9 461 aa10.77□□□□□ -0.68
SIX4-202ENST00000554079 ATL3Q6DD88 541 aa10.77□□□□□ -0.68
SIX4-202ENST00000554079 CNTROBQ8N137 903 aa10.77□□□□□ -0.68
SIX4-202ENST00000554079 ATL2Q8NHH9 583 aa10.77□□□□□ -0.68
SIX4-202ENST00000554079 AENQ8WTP8 325 aaKnown RBP10.77□□□□□ -0.68
SIX4-202ENST00000554079 GDAP1L1Q96MZ0 367 aa10.77□□□□□ -0.68
SIX4-202ENST00000554079 ZNF570Q96NI8 536 aa10.77□□□□□ -0.68
SIX4-202ENST00000554079 G3BP2Q9UN86 482 aaKnown RBP10.77□□□□□ -0.68
SIX4-202ENST00000554079 RIPOR2Q9Y4F9 1068 aa10.77□□□□□ -0.68
SIX4-202ENST00000554079 MYH7P12883 1935 aa10.77□□□□□ -0.69
SIX4-202ENST00000554079 A0A1B0GVL5 298 aa10.77□□□□□ -0.69
SIX4-202ENST00000554079 SLC3A2P08195 630 aaKnown RBP10.77□□□□□ -0.69
SIX4-202ENST00000554079 FERP16591 822 aa10.77□□□□□ -0.69
SIX4-202ENST00000554079 RANBP1P43487 201 aa10.77□□□□□ -0.69
SIX4-202ENST00000554079 PAPOLAP51003 745 aaKnown RBP10.77□□□□□ -0.69
SIX4-202ENST00000554079 ATP8B2P98198 1209 aa10.77□□□□□ -0.69
SIX4-202ENST00000554079 MYO1EQ12965 1108 aa10.77□□□□□ -0.69
SIX4-202ENST00000554079 SETDB1Q15047 1291 aa10.77□□□□□ -0.69
SIX4-202ENST00000554079 PTGISQ16647 500 aa10.77□□□□□ -0.69
SIX4-202ENST00000554079 ANKRD20A8PQ5CZ79 823 aa10.77□□□□□ -0.69
SIX4-202ENST00000554079 MTHFD1LQ6UB35 978 aa10.77□□□□□ -0.69
SIX4-202ENST00000554079 ARHGAP22Q7Z5H3 698 aa10.77□□□□□ -0.69
SIX4-202ENST00000554079 PDILTQ8N807 584 aa10.77□□□□□ -0.69
SIX4-202ENST00000554079 MYCBPAPQ8TBZ2 947 aa10.77□□□□□ -0.69
SIX4-202ENST00000554079 ARL8AQ96BM9 186 aa10.77□□□□□ -0.69
SIX4-202ENST00000554079 ALS2CR12Q96Q35 445 aa10.77□□□□□ -0.69
SIX4-202ENST00000554079 GGNBP2Q9H3C7 697 aa10.77□□□□□ -0.69
SIX4-202ENST00000554079 NOD2Q9HC29 1040 aa10.77□□□□□ -0.69
SIX4-202ENST00000554079 PCDHA7Q9UN72 937 aa10.77□□□□□ -0.69
SIX4-202ENST00000554079 RICTORQ6R327 1708 aa10.76□□□□□ -0.69
SIX4-202ENST00000554079 CACNA1FO60840 1977 aa10.76□□□□□ -0.69
SIX4-202ENST00000554079 SRRM3A6NNA2 597 aaPredicted RBP10.76□□□□□ -0.69
SIX4-202ENST00000554079 H3BQV1 296 aa10.76□□□□□ -0.69
SIX4-202ENST00000554079 RNF8O76064 485 aa10.76□□□□□ -0.69
SIX4-202ENST00000554079 NBPF7P0C2Y1 421 aaPredicted RBP10.76□□□□□ -0.69
SIX4-202ENST00000554079 CSB-PGBD3P0DP91 1061 aa10.76□□□□□ -0.69
SIX4-202ENST00000554079 RPS6KB1P23443 525 aa10.76□□□□□ -0.69
SIX4-202ENST00000554079 MKRN4PQ13434 485 aaPredicted RBP10.76□□□□□ -0.69
SIX4-202ENST00000554079 IFFO2Q5TF58 517 aa10.76□□□□□ -0.69
SIX4-202ENST00000554079 CCNI2Q6ZMN8 369 aaPredicted RBP10.76□□□□□ -0.69
SIX4-202ENST00000554079 KDM7AQ6ZMT4 941 aa10.76□□□□□ -0.69
SIX4-202ENST00000554079 FAM81AQ8TBF8 368 aa10.76□□□□□ -0.69
SIX4-202ENST00000554079 ZFAND2BQ8WV99 257 aa10.76□□□□□ -0.69
SIX4-202ENST00000554079 OSBPL7Q9BZF2 842 aa10.76□□□□□ -0.69
SIX4-202ENST00000554079 POGZQ7Z3K3 1410 aa10.76□□□□□ -0.69
SIX4-202ENST00000554079 OPA1O60313 960 aa10.75□□□□□ -0.69
SIX4-202ENST00000554079 ME1P48163 572 aa10.75□□□□□ -0.69
SIX4-202ENST00000554079 USP4Q13107 963 aa10.75□□□□□ -0.69
SIX4-202ENST00000554079 STK3Q13188 491 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms