RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 ZSWIM6Q9HCJ5 1215 aa11.38□□□□□ -0.59
LIMA1-211ENST00000552338 PALD1Q9ULE6 856 aa11.38□□□□□ -0.59
LIMA1-211ENST00000552338 DDTLA6NHG4 134 aaPredicted RBP11.37□□□□□ -0.59
LIMA1-211ENST00000552338 E7EWF7 191 aa11.37□□□□□ -0.59
LIMA1-211ENST00000552338 PSMA5P28066 241 aa11.37□□□□□ -0.59
LIMA1-211ENST00000552338 NOVP48745 357 aa11.37□□□□□ -0.59
LIMA1-211ENST00000552338 TATDN1Q6P1N9 297 aa11.37□□□□□ -0.59
LIMA1-211ENST00000552338 STOX1Q6ZVD7 989 aa11.37□□□□□ -0.59
LIMA1-211ENST00000552338 ZFPM1Q8IX07 1006 aa11.37□□□□□ -0.59
LIMA1-211ENST00000552338 AMOTL1Q8IY63 956 aa11.37□□□□□ -0.59
LIMA1-211ENST00000552338 AGXT2Q9BYV1 514 aa11.37□□□□□ -0.59
LIMA1-211ENST00000552338 CNNM2Q9H8M5 875 aa11.37□□□□□ -0.59
LIMA1-211ENST00000552338 ZNF287Q9HBT7 754 aa11.37□□□□□ -0.59
LIMA1-211ENST00000552338 SWAP70Q9UH65 585 aa11.37□□□□□ -0.59
LIMA1-211ENST00000552338 HERC5Q9UII4 1024 aaKnown RBP11.37□□□□□ -0.59
LIMA1-211ENST00000552338 TACC3Q9Y6A5 838 aa11.37□□□□□ -0.59
LIMA1-211ENST00000552338 HLA-DOAP06340 250 aa11.36□□□□□ -0.59
LIMA1-211ENST00000552338 SLC3A2P08195 630 aaKnown RBP11.36□□□□□ -0.59
LIMA1-211ENST00000552338 EXOSC10Q01780 885 aaKnown RBP11.36□□□□□ -0.59
LIMA1-211ENST00000552338 RASA3Q14644 834 aa11.36□□□□□ -0.59
LIMA1-211ENST00000552338 ADCK5Q3MIX3 580 aa11.36□□□□□ -0.59
LIMA1-211ENST00000552338 TBC1D10CQ8IV04 446 aa11.36□□□□□ -0.59
LIMA1-211ENST00000552338 NCOA7Q8NI08 942 aa11.36□□□□□ -0.59
LIMA1-211ENST00000552338 KRT23Q9C075 422 aa11.36□□□□□ -0.59
LIMA1-211ENST00000552338 DEFB129Q9H1M3 183 aa11.36□□□□□ -0.59
LIMA1-211ENST00000552338 TCP11L1Q9NUJ3 509 aa11.36□□□□□ -0.59
LIMA1-211ENST00000552338 SERPINB13Q9UIV8 391 aa11.36□□□□□ -0.59
LIMA1-211ENST00000552338 TAF6LQ9Y6J9 622 aa11.36□□□□□ -0.59
LIMA1-211ENST00000552338 CLRN2A0PK11 232 aa11.35□□□□□ -0.59
LIMA1-211ENST00000552338 POLR3DP05423 398 aaPredicted RBP11.35□□□□□ -0.59
LIMA1-211ENST00000552338 CACNB3P54284 484 aa11.35□□□□□ -0.59
LIMA1-211ENST00000552338 PDE4BQ07343 736 aa11.35□□□□□ -0.59
LIMA1-211ENST00000552338 RABEP1Q15276 862 aa11.35□□□□□ -0.59
LIMA1-211ENST00000552338 RBM26Q5T8P6 1007 aaKnown RBP11.35□□□□□ -0.59
LIMA1-211ENST00000552338 ANGEL2Q5VTE6 544 aaKnown RBP11.35□□□□□ -0.59
LIMA1-211ENST00000552338 MFSD6Q6ZSS7 791 aa11.35□□□□□ -0.59
LIMA1-211ENST00000552338 MB21D2Q8IYB1 491 aaPredicted RBP11.35□□□□□ -0.59
LIMA1-211ENST00000552338 HOOK2Q96ED9 719 aa11.35□□□□□ -0.59
LIMA1-211ENST00000552338 CCDC17Q96LX7 622 aa11.35□□□□□ -0.59
LIMA1-211ENST00000552338 TTC14Q96N46 770 aa11.35□□□□□ -0.59
LIMA1-211ENST00000552338 NEK1Q96PY6 1258 aa11.35□□□□□ -0.59
LIMA1-211ENST00000552338 DNAJC18Q9H819 358 aa11.35□□□□□ -0.59
LIMA1-211ENST00000552338 GINM1Q9NU53 330 aa11.35□□□□□ -0.59
LIMA1-211ENST00000552338 PLIN4Q96Q06 1357 aa11.35□□□□□ -0.59
LIMA1-211ENST00000552338 PAPPA2Q9BXP8 1791 aa11.35□□□□□ -0.59
LIMA1-211ENST00000552338 ASTN2O75129 1339 aaPredicted RBP11.35□□□□□ -0.59
LIMA1-211ENST00000552338 MINDY4BA8MYZ0 360 aa11.34□□□□□ -0.59
LIMA1-211ENST00000552338 TCP10L2B9ZVM9 353 aa11.34□□□□□ -0.59
LIMA1-211ENST00000552338 MYCNP04198 464 aaPredicted RBP11.34□□□□□ -0.59
LIMA1-211ENST00000552338 CYP2D6P10635 497 aa11.34□□□□□ -0.59
LIMA1-211ENST00000552338 CDK8P49336 464 aa11.34□□□□□ -0.59
LIMA1-211ENST00000552338 EVCP57679 992 aa11.34□□□□□ -0.59
LIMA1-211ENST00000552338 CTDSPL2Q05D32 466 aa11.34□□□□□ -0.59
LIMA1-211ENST00000552338 PICALMQ13492 652 aa11.34□□□□□ -0.59
LIMA1-211ENST00000552338 RUFY3Q7L099 469 aa11.34□□□□□ -0.59
LIMA1-211ENST00000552338 DHX32Q7L7V1 743 aaKnown RBP11.34□□□□□ -0.59
LIMA1-211ENST00000552338 ANKS1AQ92625 1134 aa11.34□□□□□ -0.59
LIMA1-211ENST00000552338 DCPSQ96C86 337 aaKnown RBP11.34□□□□□ -0.59
LIMA1-211ENST00000552338 TSHZ2Q9NRE2 1034 aa11.34□□□□□ -0.59
LIMA1-211ENST00000552338 GGA3Q9NZ52 723 aa11.34□□□□□ -0.59
LIMA1-211ENST00000552338 ZNF112Q9UJU3 913 aa11.34□□□□□ -0.59
LIMA1-211ENST00000552338 TRPM7Q96QT4 1865 aa11.34□□□□□ -0.59
LIMA1-211ENST00000552338 ATAD5Q96QE3 1844 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 CYP2D7A0A087X1C5 515 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 UNCXA6NJT0 531 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 SMIM22K7EJ46 135 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 RASA1P20936 1047 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 RPS6KB1P23443 525 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 SHMT1P34896 483 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 HAND2P61296 217 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 EVX2Q03828 476 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 TCP10Q12799 353 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 TRDNQ13061 729 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 MAP3K11Q16584 847 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 CDC37L1Q7L3B6 337 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 LDHDQ86WU2 507 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 NEDD1Q8NHV4 660 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 ESR2Q92731 530 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 SNX21Q969T3 373 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 TMEM39BQ9GZU3 492 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 RRAGCQ9HB90 399 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 VEZTQ9HBM0 779 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 ZSWIM5Q9P217 1185 aa11.33□□□□□ -0.6
LIMA1-211ENST00000552338 IGKV6D-41A0A0C4DH26 115 aa11.32□□□□□ -0.6
LIMA1-211ENST00000552338 PHF20L1A8MW92 1017 aa11.32□□□□□ -0.6
LIMA1-211ENST00000552338 MCM5P33992 734 aa11.32□□□□□ -0.6
LIMA1-211ENST00000552338 LIFRP42702 1097 aa11.32□□□□□ -0.6
LIMA1-211ENST00000552338 SUPT20HL1Q3ZLR7 823 aa11.32□□□□□ -0.6
LIMA1-211ENST00000552338 CCDC178Q5BJE1 867 aa11.32□□□□□ -0.6
LIMA1-211ENST00000552338 BLOC1S2Q6QNY1 142 aa11.32□□□□□ -0.6
LIMA1-211ENST00000552338 TMEM87BQ96K49 555 aa11.32□□□□□ -0.6
LIMA1-211ENST00000552338 CSRNP1Q96S65 589 aa11.32□□□□□ -0.6
LIMA1-211ENST00000552338 SAP30BPQ9UHR5 308 aaKnown RBP11.32□□□□□ -0.6
LIMA1-211ENST00000552338 NEDD4P46934 1319 aa11.32□□□□□ -0.6
LIMA1-211ENST00000552338 CASTP20810 708 aaKnown RBP11.31□□□□□ -0.6
LIMA1-211ENST00000552338 MCM2P49736 904 aa11.31□□□□□ -0.6
LIMA1-211ENST00000552338 ANTXR2P58335 489 aa11.31□□□□□ -0.6
LIMA1-211ENST00000552338 COL9A3Q14050 684 aaPredicted RBP11.31□□□□□ -0.6
LIMA1-211ENST00000552338 SEC23AQ15436 765 aa11.31□□□□□ -0.6
LIMA1-211ENST00000552338 DCAF15Q66K64 600 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms