RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 INHBEP58166 350 aa8.5□□□□□ -1.05
LIMA1-204ENST00000549064 LSM11P83369 360 aaKnown RBP eCLIP8.5□□□□□ -1.05
LIMA1-204ENST00000549064 DPYDQ12882 1025 aa8.5□□□□□ -1.05
LIMA1-204ENST00000549064 POTEBQ6S5H4 581 aa8.5□□□□□ -1.05
LIMA1-204ENST00000549064 ARMC2Q8NEN0 867 aa8.5□□□□□ -1.05
LIMA1-204ENST00000549064 ADAM32Q8TC27 787 aa8.5□□□□□ -1.05
LIMA1-204ENST00000549064 SH3TC2Q8TF17 1288 aa8.5□□□□□ -1.05
LIMA1-204ENST00000549064 CLP1Q92989 425 aaKnown RBP8.5□□□□□ -1.05
LIMA1-204ENST00000549064 SLC10A4Q96EP9 437 aa8.5□□□□□ -1.05
LIMA1-204ENST00000549064 ZNF594Q96JF6 807 aaPredicted RBP8.5□□□□□ -1.05
LIMA1-204ENST00000549064 PTPN18Q99952 460 aa8.5□□□□□ -1.05
LIMA1-204ENST00000549064 PRO3102Q9H379 93 aa8.5□□□□□ -1.05
LIMA1-204ENST00000549064 TSR3Q9UJK0 312 aaKnown RBP8.5□□□□□ -1.05
LIMA1-204ENST00000549064 ECM29Q5VYK3 1845 aa8.5□□□□□ -1.05
LIMA1-204ENST00000549064 ZBTB48P10074 688 aaPredicted RBP8.49□□□□□ -1.05
LIMA1-204ENST00000549064 ATP2B4P23634 1241 aa8.49□□□□□ -1.05
LIMA1-204ENST00000549064 SERPINB4P48594 390 aa8.49□□□□□ -1.05
LIMA1-204ENST00000549064 EML3Q32P44 896 aa8.49□□□□□ -1.05
LIMA1-204ENST00000549064 TSGA10IPQ3SY00 556 aa8.49□□□□□ -1.05
LIMA1-204ENST00000549064 MSS51Q4VC12 460 aa8.49□□□□□ -1.05
LIMA1-204ENST00000549064 NBPF11Q86T75 865 aa8.49□□□□□ -1.05
LIMA1-204ENST00000549064 OGFOD1Q8N543 542 aa8.49□□□□□ -1.05
LIMA1-204ENST00000549064 GPKOWQ92917 476 aaPredicted RBP eCLIP8.49□□□□□ -1.05
LIMA1-204ENST00000549064 SHISA4Q96DD7 197 aa8.49□□□□□ -1.05
LIMA1-204ENST00000549064 ARHGAP9Q9BRR9 750 aa8.49□□□□□ -1.05
LIMA1-204ENST00000549064 VCANP13611 3396 aa8.48□□□□□ -1.05
LIMA1-204ENST00000549064 IRS4O14654 1257 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-204ENST00000549064 COPS2P61201 443 aa8.48□□□□□ -1.05
LIMA1-204ENST00000549064 CLDN10P78369 228 aa8.48□□□□□ -1.05
LIMA1-204ENST00000549064 DACT2Q5SW24 774 aa8.48□□□□□ -1.05
LIMA1-204ENST00000549064 ZNF592Q92610 1267 aa8.48□□□□□ -1.05
LIMA1-204ENST00000549064 CCDC85AQ96PX6 553 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-204ENST00000549064 SPSB2Q99619 263 aa8.48□□□□□ -1.05
LIMA1-204ENST00000549064 ISCA1Q9BUE6 129 aa8.48□□□□□ -1.05
LIMA1-204ENST00000549064 ARHGAP39Q9C0H5 1083 aa8.48□□□□□ -1.05
LIMA1-204ENST00000549064 TSPYL4Q9UJ04 414 aa8.48□□□□□ -1.05
LIMA1-204ENST00000549064 UNCXA6NJT0 531 aa8.47□□□□□ -1.05
LIMA1-204ENST00000549064 MCCD1P59942 119 aaPredicted RBP8.47□□□□□ -1.05
LIMA1-204ENST00000549064 MTFR1Q15390 333 aa8.47□□□□□ -1.05
LIMA1-204ENST00000549064 MAP3K11Q16584 847 aa8.47□□□□□ -1.05
LIMA1-204ENST00000549064 OTUD7BQ6GQQ9 843 aa8.47□□□□□ -1.05
LIMA1-204ENST00000549064 TRAF7Q6Q0C0 670 aa8.47□□□□□ -1.05
LIMA1-204ENST00000549064 PODNQ7Z5L7 613 aa8.47□□□□□ -1.05
LIMA1-204ENST00000549064 APOBEC3FQ8IUX4 373 aaKnown RBP8.47□□□□□ -1.05
LIMA1-204ENST00000549064 KIAA0825Q8IV33 1275 aa8.47□□□□□ -1.05
LIMA1-204ENST00000549064 HS3ST6Q96QI5 342 aa8.47□□□□□ -1.05
LIMA1-204ENST00000549064 COL25A1Q9BXS0 654 aaPredicted RBP8.47□□□□□ -1.05
LIMA1-204ENST00000549064 ALPK3Q96L96 1907 aa8.46□□□□□ -1.05
LIMA1-204ENST00000549064 SOWAHDA6NJG2 315 aa8.46□□□□□ -1.06
LIMA1-204ENST00000549064 IGSF3O75054 1194 aa8.46□□□□□ -1.06
LIMA1-204ENST00000549064 MMP16P51512 607 aa8.46□□□□□ -1.06
LIMA1-204ENST00000549064 KRT24Q2M2I5 525 aa8.46□□□□□ -1.06
LIMA1-204ENST00000549064 MAP7D1Q3KQU3 841 aa8.46□□□□□ -1.06
LIMA1-204ENST00000549064 ZBTB33Q86T24 672 aa8.46□□□□□ -1.06
LIMA1-204ENST00000549064 ZBED3Q96IU2 234 aaPredicted RBP8.46□□□□□ -1.06
LIMA1-204ENST00000549064 DEFB129Q9H1M3 183 aa8.46□□□□□ -1.06
LIMA1-204ENST00000549064 DNAAF2Q9NVR5 837 aaKnown RBP8.46□□□□□ -1.06
LIMA1-204ENST00000549064 PCDHAC2Q9Y5I4 1007 aa8.46□□□□□ -1.06
LIMA1-204ENST00000549064 XDHP47989 1333 aa8.46□□□□□ -1.06
LIMA1-204ENST00000549064 COL1A1P02452 1464 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-204ENST00000549064 ZBTB7BO15156 539 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-204ENST00000549064 TLL1O43897 1013 aa8.45□□□□□ -1.06
LIMA1-204ENST00000549064 PPP1R12BO60237 982 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-204ENST00000549064 LZTS3O60299 673 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-204ENST00000549064 PPP2R1AP30153 589 aa8.45□□□□□ -1.06
LIMA1-204ENST00000549064 TAF1CQ15572 869 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-204ENST00000549064 NFE2L2Q16236 605 aa8.45□□□□□ -1.06
LIMA1-204ENST00000549064 NBPF12Q5TAG4 269 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-204ENST00000549064 Q7L0L9 218 aa8.45□□□□□ -1.06
LIMA1-204ENST00000549064 TXNRD3Q86VQ6 643 aa8.45□□□□□ -1.06
LIMA1-204ENST00000549064 PLBD2Q8NHP8 589 aa8.45□□□□□ -1.06
LIMA1-204ENST00000549064 JARID2Q92833 1246 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-204ENST00000549064 WNT2BQ93097 391 aa8.45□□□□□ -1.06
LIMA1-204ENST00000549064 ELP3Q9H9T3 547 aa8.45□□□□□ -1.06
LIMA1-204ENST00000549064 CHPF2Q9P2E5 772 aa8.45□□□□□ -1.06
LIMA1-204ENST00000549064 KIAA1024Q9UPX6 916 aa8.45□□□□□ -1.06
LIMA1-204ENST00000549064 NOD1Q9Y239 953 aa8.45□□□□□ -1.06
LIMA1-204ENST00000549064 LAMA2P24043 3122 aaKnown RBP8.45□□□□□ -1.06
LIMA1-204ENST00000549064 EYSQ5T1H1 3165 aa8.45□□□□□ -1.06
LIMA1-204ENST00000549064 AOX1Q06278 1338 aa8.45□□□□□ -1.06
LIMA1-204ENST00000549064 MED23Q9ULK4 1368 aa8.45□□□□□ -1.06
LIMA1-204ENST00000549064 CLRN2A0PK11 232 aa8.44□□□□□ -1.06
LIMA1-204ENST00000549064 USP2O75604 605 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-204ENST00000549064 OXLD1Q5BKU9 147 aa8.44□□□□□ -1.06
LIMA1-204ENST00000549064 STRIP1Q5VSL9 837 aa8.44□□□□□ -1.06
LIMA1-204ENST00000549064 PTCRAQ6ISU1 281 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-204ENST00000549064 DNAJC14Q6Y2X3 702 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-204ENST00000549064 ANKRD13DQ6ZTN6 518 aa8.44□□□□□ -1.06
LIMA1-204ENST00000549064 UBE2Q1Q7Z7E8 422 aa8.44□□□□□ -1.06
LIMA1-204ENST00000549064 TRIM50Q86XT4 487 aa8.44□□□□□ -1.06
LIMA1-204ENST00000549064 FAM43AQ8N2R8 423 aa8.44□□□□□ -1.06
LIMA1-204ENST00000549064 BRI3BPQ8WY22 251 aa8.44□□□□□ -1.06
LIMA1-204ENST00000549064 OPTNQ96CV9 577 aa8.44□□□□□ -1.06
LIMA1-204ENST00000549064 PLEKHF1Q96S99 279 aa8.44□□□□□ -1.06
LIMA1-204ENST00000549064 UNC93B1Q9H1C4 597 aa8.44□□□□□ -1.06
LIMA1-204ENST00000549064 ZFYVE28Q9HCC9 887 aa8.44□□□□□ -1.06
LIMA1-204ENST00000549064 STAP2Q9UGK3 403 aa8.44□□□□□ -1.06
LIMA1-204ENST00000549064 DOLKQ9UPQ8 538 aa8.44□□□□□ -1.06
LIMA1-204ENST00000549064 MYO3BQ8WXR4 1341 aa8.44□□□□□ -1.06
LIMA1-204ENST00000549064 MYH3P11055 1940 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms