RNA–Protein interactions for RNA: ENST00000545367.5

NPIPB4-221, Transcript of nuclear pore complex interacting protein family member B4, human

TSL 2

Gene NPIPB4, Length 846 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB4-221	ENST00000545367	ZDHHC15	Q96MV8	337 aa		10.85	□□□□□ -0.67
NPIPB4-221	ENST00000545367	MAST3	O60307	1309 aa		10.84	□□□□□ -0.67
NPIPB4-221	ENST00000545367	FRAT2	O75474	233 aa	Predicted RBP	10.84	□□□□□ -0.67
NPIPB4-221	ENST00000545367	TCP10	Q12799	353 aa		10.84	□□□□□ -0.67
NPIPB4-221	ENST00000545367	IRF5	Q13568	498 aa		10.84	□□□□□ -0.67
NPIPB4-221	ENST00000545367	NOL9	Q5SY16	702 aa	Known RBP	10.84	□□□□□ -0.67
NPIPB4-221	ENST00000545367	TMC2	Q8TDI7	906 aa		10.84	□□□□□ -0.67
NPIPB4-221	ENST00000545367	PXYLP1	Q8TE99	480 aa		10.84	□□□□□ -0.67
NPIPB4-221	ENST00000545367	CHMP4A	Q9BY43	222 aa		10.84	□□□□□ -0.67
NPIPB4-221	ENST00000545367	ATRNL1	Q5VV63	1379 aa		10.83	□□□□□ -0.68
NPIPB4-221	ENST00000545367	HMGCR	P04035	888 aa		10.83	□□□□□ -0.68
NPIPB4-221	ENST00000545367	HDLBP	Q00341	1268 aa	Known RBP	10.83	□□□□□ -0.68
NPIPB4-221	ENST00000545367	UBE4A	Q14139	1066 aa		10.83	□□□□□ -0.68
NPIPB4-221	ENST00000545367	TWISTNB	Q3B726	338 aa	Predicted RBP	10.83	□□□□□ -0.68
NPIPB4-221	ENST00000545367	FKBP1C	Q5VVH2	108 aa		10.83	□□□□□ -0.68
NPIPB4-221	ENST00000545367	APOBEC3H	Q6NTF7	200 aa	Known RBP	10.83	□□□□□ -0.68
NPIPB4-221	ENST00000545367	ANKLE1	Q8NAG6	615 aa		10.83	□□□□□ -0.68
NPIPB4-221	ENST00000545367	TBC1D22A	Q8WUA7	517 aa		10.83	□□□□□ -0.68
NPIPB4-221	ENST00000545367	NBPF3	Q9H094	633 aa		10.83	□□□□□ -0.68
NPIPB4-221	ENST00000545367	C11orf49	Q9H6J7	331 aa		10.83	□□□□□ -0.68
NPIPB4-221	ENST00000545367	GPHN	Q9NQX3	736 aa	Predicted RBP	10.83	□□□□□ -0.68
NPIPB4-221	ENST00000545367	PFAS	O15067	1338 aa		10.83	□□□□□ -0.68
NPIPB4-221	ENST00000545367		A0A0G2JLL6	359 aa	Predicted RBP	10.82	□□□□□ -0.68
NPIPB4-221	ENST00000545367	MDM2	Q00987	491 aa	Predicted RBP	10.82	□□□□□ -0.68
NPIPB4-221	ENST00000545367	NFIA	Q12857	509 aa		10.82	□□□□□ -0.68
NPIPB4-221	ENST00000545367	TRIM32	Q13049	653 aa		10.82	□□□□□ -0.68
NPIPB4-221	ENST00000545367	PRRT2	Q7Z6L0	340 aa	Predicted RBP	10.82	□□□□□ -0.68
NPIPB4-221	ENST00000545367	ANKRD13C	Q8N6S4	541 aa		10.82	□□□□□ -0.68
NPIPB4-221	ENST00000545367	COA7	Q96BR5	231 aa		10.82	□□□□□ -0.68
NPIPB4-221	ENST00000545367	PUS3	Q9BZE2	481 aa	Known RBP	10.82	□□□□□ -0.68
NPIPB4-221	ENST00000545367	PRDM6	Q9NQX0	595 aa		10.82	□□□□□ -0.68
NPIPB4-221	ENST00000545367	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	10.82	□□□□□ -0.68
NPIPB4-221	ENST00000545367	ZNF112	Q9UJU3	913 aa		10.82	□□□□□ -0.68
NPIPB4-221	ENST00000545367	C2orf72	A6NCS6	295 aa		10.81	□□□□□ -0.68
NPIPB4-221	ENST00000545367		F6X3S4	739 aa		10.81	□□□□□ -0.68
NPIPB4-221	ENST00000545367	CAPN2	P17655	700 aa		10.81	□□□□□ -0.68
NPIPB4-221	ENST00000545367	SCYL3	Q8IZE3	742 aa		10.81	□□□□□ -0.68
NPIPB4-221	ENST00000545367	PICK1	Q9NRD5	415 aa		10.81	□□□□□ -0.68
NPIPB4-221	ENST00000545367	RLF	Q13129	1914 aa		10.8	□□□□□ -0.68
NPIPB4-221	ENST00000545367	SIPA1L1	O43166	1804 aa		10.8	□□□□□ -0.68
NPIPB4-221	ENST00000545367	TRIM75P	A6NK02	468 aa		10.8	□□□□□ -0.68
NPIPB4-221	ENST00000545367	GRM8	O00222	908 aa		10.8	□□□□□ -0.68
NPIPB4-221	ENST00000545367	CXCL11	O14625	94 aa		10.8	□□□□□ -0.68
NPIPB4-221	ENST00000545367	PDE4A	P27815	886 aa		10.8	□□□□□ -0.68
NPIPB4-221	ENST00000545367	DIXDC1	Q155Q3	683 aa		10.8	□□□□□ -0.68
NPIPB4-221	ENST00000545367	ZNF697	Q5TEC3	545 aa		10.8	□□□□□ -0.68
NPIPB4-221	ENST00000545367	FASTKD5	Q7L8L6	764 aa	Known RBP	10.8	□□□□□ -0.68
NPIPB4-221	ENST00000545367	CCDC84	Q86UT8	332 aa	Predicted RBP	10.8	□□□□□ -0.68
NPIPB4-221	ENST00000545367	MAFA	Q8NHW3	353 aa	Predicted RBP	10.8	□□□□□ -0.68
NPIPB4-221	ENST00000545367	FAM151A	Q8WW52	585 aa		10.8	□□□□□ -0.68
NPIPB4-221	ENST00000545367	DAGLA	Q9Y4D2	1042 aa		10.8	□□□□□ -0.68
NPIPB4-221	ENST00000545367	ZHX2	Q9Y6X8	837 aa		10.8	□□□□□ -0.68
NPIPB4-221	ENST00000545367	MROH5	Q6ZUA9	1318 aa		10.8	□□□□□ -0.68
NPIPB4-221	ENST00000545367	RFX7	Q2KHR2	1363 aa		10.79	□□□□□ -0.68
NPIPB4-221	ENST00000545367	CDK5RAP2	Q96SN8	1893 aa		10.79	□□□□□ -0.68
NPIPB4-221	ENST00000545367	FAM110C	Q1W6H9	321 aa		10.79	□□□□□ -0.68
NPIPB4-221	ENST00000545367	CAVIN4	Q5BKX8	364 aa		10.79	□□□□□ -0.68
NPIPB4-221	ENST00000545367	METTL24	Q5JXM2	366 aa		10.79	□□□□□ -0.68
NPIPB4-221	ENST00000545367	TREML2	Q5T2D2	321 aa		10.79	□□□□□ -0.68
NPIPB4-221	ENST00000545367	CDC42EP5	Q6NZY7	148 aa		10.79	□□□□□ -0.68
NPIPB4-221	ENST00000545367	FBXO33	Q7Z6M2	555 aa		10.79	□□□□□ -0.68
NPIPB4-221	ENST00000545367	TRIB2	Q92519	343 aa		10.79	□□□□□ -0.68
NPIPB4-221	ENST00000545367	HMX1	Q9NP08	348 aa	Predicted RBP	10.79	□□□□□ -0.68
NPIPB4-221	ENST00000545367	FAM198A	Q9UFP1	575 aa		10.79	□□□□□ -0.68
NPIPB4-221	ENST00000545367	SLC45A1	Q9Y2W3	748 aa		10.79	□□□□□ -0.68
NPIPB4-221	ENST00000545367	PTPRA	P18433	802 aa		10.78	□□□□□ -0.68
NPIPB4-221	ENST00000545367	FOXK1	P85037	733 aa		10.78	□□□□□ -0.68
NPIPB4-221	ENST00000545367	LRRC26	Q2I0M4	334 aa		10.78	□□□□□ -0.68
NPIPB4-221	ENST00000545367	HHIPL2	Q6UWX4	724 aa		10.78	□□□□□ -0.68
NPIPB4-221	ENST00000545367	WDR70	Q9NW82	654 aa		10.78	□□□□□ -0.68
NPIPB4-221	ENST00000545367	AGTPBP1	Q9UPW5	1226 aa		10.78	□□□□□ -0.68
NPIPB4-221	ENST00000545367	NCOR1	O75376	2440 aa		10.77	□□□□□ -0.68
NPIPB4-221	ENST00000545367	PHF20L1	A8MW92	1017 aa		10.77	□□□□□ -0.69
NPIPB4-221	ENST00000545367	SLURP2	P0DP57	97 aa		10.77	□□□□□ -0.69
NPIPB4-221	ENST00000545367	COL9A1	P20849	921 aa		10.77	□□□□□ -0.69
NPIPB4-221	ENST00000545367	ZEB1	P37275	1124 aa	Predicted RBP	10.77	□□□□□ -0.69
NPIPB4-221	ENST00000545367	LRRC24	Q50LG9	513 aa		10.77	□□□□□ -0.69
NPIPB4-221	ENST00000545367	BEND3	Q5T5X7	828 aa		10.77	□□□□□ -0.69
NPIPB4-221	ENST00000545367	FAM109B	Q6ICB4	259 aa	Predicted RBP	10.77	□□□□□ -0.69
NPIPB4-221	ENST00000545367	ZFPM1	Q8IX07	1006 aa		10.77	□□□□□ -0.69
NPIPB4-221	ENST00000545367	SUCLG2	Q96I99	432 aa		10.77	□□□□□ -0.69
NPIPB4-221	ENST00000545367	RAPGEFL1	Q9UHV5	662 aa		10.77	□□□□□ -0.69
NPIPB4-221	ENST00000545367	PNMA3	Q9UL41	463 aa		10.77	□□□□□ -0.69
NPIPB4-221	ENST00000545367	OGDHL	Q9ULD0	1010 aa		10.77	□□□□□ -0.69
NPIPB4-221	ENST00000545367	SUGT1	Q9Y2Z0	365 aa		10.77	□□□□□ -0.69
NPIPB4-221	ENST00000545367	AFG3L2	Q9Y4W6	797 aa		10.77	□□□□□ -0.69
NPIPB4-221	ENST00000545367	FANCI	Q9NVI1	1328 aa		10.77	□□□□□ -0.69
NPIPB4-221	ENST00000545367	FOCAD	Q5VW36	1801 aa		10.77	□□□□□ -0.69
NPIPB4-221	ENST00000545367	PRDX5	P30044	214 aa		10.76	□□□□□ -0.69
NPIPB4-221	ENST00000545367	RGS3	P49796	1198 aa		10.76	□□□□□ -0.69
NPIPB4-221	ENST00000545367	MFSD10	Q14728	455 aa		10.76	□□□□□ -0.69
NPIPB4-221	ENST00000545367	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	10.76	□□□□□ -0.69
NPIPB4-221	ENST00000545367	VGLL2	Q8N8G2	317 aa		10.76	□□□□□ -0.69
NPIPB4-221	ENST00000545367	MYLIP	Q8WY64	445 aa		10.76	□□□□□ -0.69
NPIPB4-221	ENST00000545367	C9orf78	Q9NZ63	289 aa	Predicted RBP	10.76	□□□□□ -0.69
NPIPB4-221	ENST00000545367	LRRFIP2	Q9Y608	721 aa	Known RBP	10.76	□□□□□ -0.69
NPIPB4-221	ENST00000545367	COL6A1	P12109	1028 aa		10.75	□□□□□ -0.69
NPIPB4-221	ENST00000545367	HOXB3	P14651	431 aa	Predicted RBP	10.75	□□□□□ -0.69
NPIPB4-221	ENST00000545367	CYP2B6	P20813	491 aa		10.75	□□□□□ -0.69
NPIPB4-221	ENST00000545367	MAP3K21	Q5TCX8	1036 aa		10.75	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms