RNA–Protein interactions for RNA: ENST00000542570.5

TOP3A-208, Transcript of DNA topoisomerase III alpha, human

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOP3A-208	ENST00000542570	CPD	O75976	1380 aa		11.63	□□□□□ -0.55
TOP3A-208	ENST00000542570	HMGB2	P26583	209 aa	Known RBP	11.63	□□□□□ -0.55
TOP3A-208	ENST00000542570	EZH2	Q15910	746 aa	Known RBP	11.63	□□□□□ -0.55
TOP3A-208	ENST00000542570	AOPEP	Q8N6M6	819 aa		11.63	□□□□□ -0.55
TOP3A-208	ENST00000542570	PNMA1	Q8ND90	353 aa		11.63	□□□□□ -0.55
TOP3A-208	ENST00000542570	ZBTB9	Q96C00	473 aa		11.63	□□□□□ -0.55
TOP3A-208	ENST00000542570	TCP11L1	Q9NUJ3	509 aa		11.63	□□□□□ -0.55
TOP3A-208	ENST00000542570	POLR1A	O95602	1720 aa	Predicted RBP	11.63	□□□□□ -0.55
TOP3A-208	ENST00000542570	CDC25A	P30304	524 aa		11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	SLC1A4	P43007	532 aa		11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	GPSM2	P81274	684 aa		11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	NTSR2	O95665	410 aa		11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	RBM10	P98175	930 aa	Known RBP	11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	NR5A1	Q13285	461 aa		11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	APOA5	Q6Q788	366 aa		11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	ZFP91	Q96JP5	570 aa	Predicted RBP	11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	FBXO3	Q9UK99	471 aa		11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	BBOX1	O75936	387 aa		11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	FILIP1L	Q4L180	1135 aa		11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	NIM1K	Q8IY84	436 aa		11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	RRP36	Q96EU6	259 aa	Known RBP	11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	SNAP25	P60880	206 aa		11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	TYRO3	Q06418	890 aa		11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	CCDC178	Q5BJE1	867 aa		11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	PGBD1	Q96JS3	809 aa		11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	CD209	Q9NNX6	404 aa		11.62	□□□□□ -0.55
TOP3A-208	ENST00000542570	OVOS2	A0A0G2JMS6	1433 aa		11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	KRT2	P35908	639 aa		11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	AOC3	Q16853	763 aa		11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	USP17L2	Q6R6M4	530 aa		11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	CLEC10A	Q8IUN9	316 aa		11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	GPT2	Q8TD30	523 aa		11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	KCNG4	Q8TDN1	519 aa		11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	CUL5	Q93034	780 aa		11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	KIF13A	Q9H1H9	1805 aa		11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	ITSN1	Q15811	1721 aa		11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	SORBS3	O60504	671 aa		11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	TXK	P42681	527 aa		11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	ANO1	Q5XXA6	986 aa		11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	CYB5R4	Q7L1T6	521 aa		11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	SMARCE1	Q969G3	411 aa		11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	BIN2	Q9UBW5	565 aa	Predicted RBP	11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	POLR2D	O15514	142 aa	Known RBP	11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	TOB2	Q14106	344 aa	Predicted RBP	11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	R3HDM1	Q15032	1099 aa	Known RBP	11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	ZNF526	Q8TF50	670 aa	Predicted RBP	11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	COL5A2	P05997	1499 aa	Predicted RBP	11.61	□□□□□ -0.55
TOP3A-208	ENST00000542570	COBL	O75128	1261 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	NR1I2	O75469	434 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	CCDC174	Q6PII3	467 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	TDRD3	Q9H7E2	651 aa	Known RBP	11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	MMRN2	Q9H8L6	949 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	LEMD3	Q9Y2U8	911 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	CLIC4	Q9Y696	253 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	CHMP2A	O43633	222 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	CSF1R	P07333	972 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	PTPN21	Q16825	1174 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	TMC6	Q7Z403	805 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	NSUN7	Q8NE18	718 aa	Known RBP	11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	SMARCC2	Q8TAQ2	1214 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	SENP2	Q9HC62	589 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	DCAF8L1	A6NGE4	600 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	KLRF2	D3W0D1	207 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	PFKFB2	O60825	505 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	DEXI	O95424	95 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	STIM1	Q13586	685 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	EAPP	Q56P03	285 aa	Predicted RBP	11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	BARGIN	Q6ZT62	677 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	KCTD1	Q719H9	257 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	PPFIBP1	Q86W92	1011 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	CNKSR1	Q969H4	720 aa		11.6	□□□□□ -0.55
TOP3A-208	ENST00000542570	ARID4A	P29374	1257 aa	Predicted RBP	11.59	□□□□□ -0.55
TOP3A-208	ENST00000542570	DNA2	P51530	1060 aa		11.59	□□□□□ -0.55
TOP3A-208	ENST00000542570	NEDD4	P46934	1319 aa		11.59	□□□□□ -0.55
TOP3A-208	ENST00000542570	CAMTA1	Q9Y6Y1	1673 aa		11.59	□□□□□ -0.55
TOP3A-208	ENST00000542570	CFB	P00751	764 aa		11.59	□□□□□ -0.55
TOP3A-208	ENST00000542570	STAT6	P42226	847 aa		11.59	□□□□□ -0.55
TOP3A-208	ENST00000542570	GNAQ	P50148	359 aa		11.59	□□□□□ -0.55
TOP3A-208	ENST00000542570	ZNF827	Q17R98	1081 aa		11.59	□□□□□ -0.55
TOP3A-208	ENST00000542570	TBC1D22A	Q8WUA7	517 aa		11.59	□□□□□ -0.55
TOP3A-208	ENST00000542570	KIFC2	Q96AC6	838 aa		11.59	□□□□□ -0.55
TOP3A-208	ENST00000542570	RRAGB	Q5VZM2	374 aa		11.59	□□□□□ -0.55
TOP3A-208	ENST00000542570	BAZ2B	Q9UIF8	2168 aa	Known RBP	11.59	□□□□□ -0.55
TOP3A-208	ENST00000542570	RTL9	Q8NET4	1388 aa		11.58	□□□□□ -0.55
TOP3A-208	ENST00000542570	DDX39A	O00148	427 aa	Known RBP	11.58	□□□□□ -0.55
TOP3A-208	ENST00000542570	PDIA4	P13667	645 aa	Known RBP	11.58	□□□□□ -0.55
TOP3A-208	ENST00000542570	COL9A3	Q14050	684 aa	Predicted RBP	11.58	□□□□□ -0.55
TOP3A-208	ENST00000542570	TMEM266	Q2M3C6	531 aa		11.58	□□□□□ -0.55
TOP3A-208	ENST00000542570	MYSM1	Q5VVJ2	828 aa		11.58	□□□□□ -0.55
TOP3A-208	ENST00000542570	MAEA	Q7L5Y9	396 aa		11.58	□□□□□ -0.55
TOP3A-208	ENST00000542570	CCDC186	Q7Z3E2	898 aa		11.58	□□□□□ -0.55
TOP3A-208	ENST00000542570	FLAD1	Q8NFF5	587 aa		11.58	□□□□□ -0.55
TOP3A-208	ENST00000542570	CCDC12	Q8WUD4	166 aa	Predicted RBP	11.58	□□□□□ -0.55
TOP3A-208	ENST00000542570	C6orf50	Q9HD87	102 aa		11.58	□□□□□ -0.55
TOP3A-208	ENST00000542570	CCNT1	O60563	726 aa	Known RBP	11.58	□□□□□ -0.56

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