RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 HNRNPH1P31943 449 aaKnown RBP12.68□□□□□ -0.38
CDH3-203ENST00000542274 MAGEA10P43363 369 aaPredicted RBP12.68□□□□□ -0.38
CDH3-203ENST00000542274 CRKLP46109 303 aaKnown RBP12.68□□□□□ -0.38
CDH3-203ENST00000542274 SAPCD2Q86UD0 394 aa12.68□□□□□ -0.38
CDH3-203ENST00000542274 TCEANC2Q96MN5 208 aa12.68□□□□□ -0.38
CDH3-203ENST00000542274 PUS3Q9BZE2 481 aaKnown RBP12.68□□□□□ -0.38
CDH3-203ENST00000542274 UTP6Q9NYH9 597 aaKnown RBP12.68□□□□□ -0.38
CDH3-203ENST00000542274 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.68□□□□□ -0.38
CDH3-203ENST00000542274 PYCARDQ9ULZ3 195 aa12.68□□□□□ -0.38
CDH3-203ENST00000542274 V9GYY5 206 aaPredicted RBP12.68□□□□□ -0.38
CDH3-203ENST00000542274 NUP98P52948 1817 aa12.68□□□□□ -0.38
CDH3-203ENST00000542274 XBP1P17861 261 aa12.68□□□□□ -0.38
CDH3-203ENST00000542274 CASTP20810 708 aaKnown RBP12.68□□□□□ -0.38
CDH3-203ENST00000542274 NF2P35240 595 aa12.68□□□□□ -0.38
CDH3-203ENST00000542274 AK2P54819 239 aa12.68□□□□□ -0.38
CDH3-203ENST00000542274 TIMM10P62072 90 aa12.68□□□□□ -0.38
CDH3-203ENST00000542274 SFMBT2Q5VUG0 894 aa12.68□□□□□ -0.38
CDH3-203ENST00000542274 SEC62Q99442 399 aaKnown RBP12.68□□□□□ -0.38
CDH3-203ENST00000542274 BTAF1O14981 1849 aa12.68□□□□□ -0.38
CDH3-203ENST00000542274 SYCE3A1L190 88 aa12.68□□□□□ -0.38
CDH3-203ENST00000542274 H7C1W4 665 aa12.68□□□□□ -0.38
CDH3-203ENST00000542274 FLT3P36888 993 aa12.68□□□□□ -0.38
CDH3-203ENST00000542274 LMAN1P49257 510 aa12.68□□□□□ -0.38
CDH3-203ENST00000542274 INTS5Q6P9B9 1019 aaKnown RBP12.68□□□□□ -0.38
CDH3-203ENST00000542274 CCDC129Q6ZRS4 1044 aa12.68□□□□□ -0.38
CDH3-203ENST00000542274 PUF60Q9UHX1 559 aaKnown RBP12.68□□□□□ -0.38
CDH3-203ENST00000542274 MAP3K15Q6ZN16 1313 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 PEX14O75381 377 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 PNMA6AP0CW24 399 aaPredicted RBP12.67□□□□□ -0.38
CDH3-203ENST00000542274 TCIRG1Q13488 830 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 ELF2Q15723 593 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 DBN1Q16643 649 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 GORABQ5T7V8 394 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 SPATA21Q7Z572 469 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 KIAA0825Q8IV33 1275 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 FAM89AQ96GI7 184 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 A1CFQ9NQ94 594 aaKnown RBP12.67□□□□□ -0.38
CDH3-203ENST00000542274 AKAP2Q9Y2D5 859 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 SUGT1Q9Y2Z0 365 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 RANBP1P43487 201 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 SCRN1Q12765 414 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 LONRF3Q496Y0 759 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 MAMSTRQ6ZN01 415 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 RUFY3Q7L099 469 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 ATG9AQ7Z3C6 839 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 REXO1L1PQ8IX06 675 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 SEPT12Q8IYM1 358 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 KAT2BQ92831 832 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 NEUROD6Q96NK8 337 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 ISCA1Q9BUE6 129 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 CCDC87Q9NVE4 849 aa12.67□□□□□ -0.38
CDH3-203ENST00000542274 PRPF4BQ13523 1007 aaKnown RBP12.66□□□□□ -0.38
CDH3-203ENST00000542274 CUL4AQ13619 759 aa12.66□□□□□ -0.38
CDH3-203ENST00000542274 TMEM110Q86TL2 294 aa12.66□□□□□ -0.38
CDH3-203ENST00000542274 JAKMIP1Q96N16 626 aaKnown RBP12.66□□□□□ -0.38
CDH3-203ENST00000542274 TTC14Q96N46 770 aa12.66□□□□□ -0.38
CDH3-203ENST00000542274 TRAIPQ9BWF2 469 aa12.66□□□□□ -0.38
CDH3-203ENST00000542274 UNC45AQ9H3U1 944 aa12.66□□□□□ -0.38
CDH3-203ENST00000542274 QTRT2Q9H974 415 aaKnown RBP12.66□□□□□ -0.38
CDH3-203ENST00000542274 TBC1D7Q9P0N9 293 aa12.66□□□□□ -0.38
CDH3-203ENST00000542274 RBM8AQ9Y5S9 174 aaKnown RBP12.66□□□□□ -0.38
CDH3-203ENST00000542274 COL15A1P39059 1388 aa12.66□□□□□ -0.38
CDH3-203ENST00000542274 NEK9Q8TD19 979 aa12.66□□□□□ -0.38
CDH3-203ENST00000542274 EZH1Q92800 747 aaPredicted RBP12.66□□□□□ -0.38
CDH3-203ENST00000542274 TRPC5Q9UL62 973 aaPredicted RBP12.66□□□□□ -0.38
CDH3-203ENST00000542274 CCDC171Q6TFL3 1326 aa12.66□□□□□ -0.38
CDH3-203ENST00000542274 ATRNO75882 1429 aa12.66□□□□□ -0.38
CDH3-203ENST00000542274 PRPF40AO75400 957 aaKnown RBP12.65□□□□□ -0.38
CDH3-203ENST00000542274 ABL2P42684 1182 aa12.65□□□□□ -0.38
CDH3-203ENST00000542274 LINC00116Q8NCU8 138 aa12.65□□□□□ -0.38
CDH3-203ENST00000542274 NSFL1CQ9UNZ2 370 aaKnown RBP12.65□□□□□ -0.38
CDH3-203ENST00000542274 ANKRD36CQ5JPF3 1778 aa12.65□□□□□ -0.38
CDH3-203ENST00000542274 PDE6BP35913 854 aa12.65□□□□□ -0.38
CDH3-203ENST00000542274 PEX19P40855 299 aa12.65□□□□□ -0.38
CDH3-203ENST00000542274 ACBD5Q5T8D3 534 aaPredicted RBP12.65□□□□□ -0.38
CDH3-203ENST00000542274 FOXR1Q6PIV2 292 aa12.65□□□□□ -0.38
CDH3-203ENST00000542274 GIGYF2Q6Y7W6 1299 aaKnown RBP12.65□□□□□ -0.38
CDH3-203ENST00000542274 UHMK1Q8TAS1 419 aaKnown RBP12.65□□□□□ -0.38
CDH3-203ENST00000542274 RBM17Q96I25 401 aaKnown RBP12.65□□□□□ -0.38
CDH3-203ENST00000542274 GDPD2Q9HCC8 539 aa12.65□□□□□ -0.38
CDH3-203ENST00000542274 ARHGEF10LQ9HCE6 1279 aa12.65□□□□□ -0.38
CDH3-203ENST00000542274 LMBRD1Q9NUN5 540 aa12.65□□□□□ -0.38
CDH3-203ENST00000542274 A0A087WUV0 522 aaPredicted RBP12.64□□□□□ -0.39
CDH3-203ENST00000542274 SKAP2O75563 359 aaPredicted RBP12.64□□□□□ -0.39
CDH3-203ENST00000542274 CA8P35219 290 aa12.64□□□□□ -0.39
CDH3-203ENST00000542274 IL6STP40189 918 aaPredicted RBP12.64□□□□□ -0.39
CDH3-203ENST00000542274 GJA8P48165 433 aa12.64□□□□□ -0.39
CDH3-203ENST00000542274 NECTIN1Q15223 517 aa12.64□□□□□ -0.39
CDH3-203ENST00000542274 ARMC9Q7Z3E5 817 aa12.64□□□□□ -0.39
CDH3-203ENST00000542274 PHACTR1Q9C0D0 580 aa12.64□□□□□ -0.39
CDH3-203ENST00000542274 NACA2Q9H009 215 aa12.64□□□□□ -0.39
CDH3-203ENST00000542274 IRF2BPLQ9H1B7 796 aa12.64□□□□□ -0.39
CDH3-203ENST00000542274 ZCCHC17Q9NP64 241 aaKnown RBP12.64□□□□□ -0.39
CDH3-203ENST00000542274 SBF2Q86WG5 1849 aa12.64□□□□□ -0.39
CDH3-203ENST00000542274 SLC27A2O14975 620 aa12.64□□□□□ -0.39
CDH3-203ENST00000542274 EIF5P55010 431 aaKnown RBP12.64□□□□□ -0.39
CDH3-203ENST00000542274 CREB3L3Q68CJ9 461 aa12.64□□□□□ -0.39
CDH3-203ENST00000542274 STAG2Q8N3U4 1231 aa12.64□□□□□ -0.39
CDH3-203ENST00000542274 RUFY2Q8WXA3 655 aa12.64□□□□□ -0.39
CDH3-203ENST00000542274 TEKT1Q969V4 418 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms