RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 C1orf127Q8N9H9 656 aa7.13□□□□□ -1.27
PRKDC-209ENST00000540819 SHKBP1Q8TBC3 707 aa7.13□□□□□ -1.27
PRKDC-209ENST00000540819 EVI5LQ96CN4 794 aa7.13□□□□□ -1.27
PRKDC-209ENST00000540819 SGSM3Q96HU1 749 aa7.13□□□□□ -1.27
PRKDC-209ENST00000540819 IER2Q9BTL4 223 aa7.13□□□□□ -1.27
PRKDC-209ENST00000540819 DZANK1Q9NVP4 752 aa7.13□□□□□ -1.27
PRKDC-209ENST00000540819 TCEAL9Q9UHQ7 104 aa7.13□□□□□ -1.27
PRKDC-209ENST00000540819 HIF3AQ9Y2N7 669 aa7.13□□□□□ -1.27
PRKDC-209ENST00000540819 SH3BP5O60239 455 aa7.12□□□□□ -1.27
PRKDC-209ENST00000540819 C19orf57Q0VDD7 668 aa7.12□□□□□ -1.27
PRKDC-209ENST00000540819 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.12□□□□□ -1.27
PRKDC-209ENST00000540819 HOMER2Q9NSB8 354 aa7.12□□□□□ -1.27
PRKDC-209ENST00000540819 FAM221BA6H8Z2 402 aa7.11□□□□□ -1.27
PRKDC-209ENST00000540819 PRR19A6NJB7 356 aa7.11□□□□□ -1.27
PRKDC-209ENST00000540819 WDR64B1ANS9 1081 aa7.11□□□□□ -1.27
PRKDC-209ENST00000540819 RXRBP28702 533 aa7.11□□□□□ -1.27
PRKDC-209ENST00000540819 ETFBP38117 255 aa7.11□□□□□ -1.27
PRKDC-209ENST00000540819 PREPP48147 710 aa7.11□□□□□ -1.27
PRKDC-209ENST00000540819 MASP1P48740 699 aa7.11□□□□□ -1.27
PRKDC-209ENST00000540819 NASPP49321 788 aaPredicted RBP7.11□□□□□ -1.27
PRKDC-209ENST00000540819 LONRF3Q496Y0 759 aa7.11□□□□□ -1.27
PRKDC-209ENST00000540819 NUTM2GQ5VZR2 741 aa7.11□□□□□ -1.27
PRKDC-209ENST00000540819 C12orf50Q8NA57 414 aaPredicted RBP7.11□□□□□ -1.27
PRKDC-209ENST00000540819 SPON2Q9BUD6 331 aa7.11□□□□□ -1.27
PRKDC-209ENST00000540819 MAF1Q9H063 256 aa7.11□□□□□ -1.27
PRKDC-209ENST00000540819 ATG3Q9NT62 314 aa7.11□□□□□ -1.27
PRKDC-209ENST00000540819 R3HCC1Q9Y3T6 440 aaKnown RBP7.11□□□□□ -1.27
PRKDC-209ENST00000540819 MEGF11A6BM72 1044 aa7.1□□□□□ -1.27
PRKDC-209ENST00000540819 NFKBIEO00221 500 aa7.1□□□□□ -1.27
PRKDC-209ENST00000540819 KIF3BO15066 747 aa7.1□□□□□ -1.27
PRKDC-209ENST00000540819 TRPA1O75762 1119 aa7.1□□□□□ -1.27
PRKDC-209ENST00000540819 PDGFAP04085 211 aa7.1□□□□□ -1.27
PRKDC-209ENST00000540819 VIL1P09327 827 aaKnown RBP7.1□□□□□ -1.27
PRKDC-209ENST00000540819 SPINK2P20155 84 aa7.1□□□□□ -1.27
PRKDC-209ENST00000540819 PAX3P23760 479 aa7.1□□□□□ -1.27
PRKDC-209ENST00000540819 ORC1Q13415 861 aa7.1□□□□□ -1.27
PRKDC-209ENST00000540819 UBE4AQ14139 1066 aa7.1□□□□□ -1.27
PRKDC-209ENST00000540819 IKBKEQ14164 716 aa7.1□□□□□ -1.27
PRKDC-209ENST00000540819 MEI1Q5TIA1 1274 aa7.1□□□□□ -1.27
PRKDC-209ENST00000540819 DTX1Q86Y01 620 aa7.1□□□□□ -1.27
PRKDC-209ENST00000540819 KIAA0825Q8IV33 1275 aa7.1□□□□□ -1.27
PRKDC-209ENST00000540819 TMEM102Q8N9M5 508 aaPredicted RBP7.1□□□□□ -1.27
PRKDC-209ENST00000540819 OSMRQ99650 979 aa7.1□□□□□ -1.27
PRKDC-209ENST00000540819 FEZ1Q99689 392 aa7.1□□□□□ -1.27
PRKDC-209ENST00000540819 GGNBP2Q9H3C7 697 aa7.1□□□□□ -1.27
PRKDC-209ENST00000540819 FAM8A1Q9UBU6 413 aa7.1□□□□□ -1.27
PRKDC-209ENST00000540819 EID1Q9Y6B2 187 aa7.1□□□□□ -1.27
PRKDC-209ENST00000540819 ESYT3A0FGR9 886 aa7.09□□□□□ -1.27
PRKDC-209ENST00000540819 ACPPP15309 386 aa7.09□□□□□ -1.27
PRKDC-209ENST00000540819 MAP4P27816 1152 aaKnown RBP7.09□□□□□ -1.27
PRKDC-209ENST00000540819 EXOSC10Q01780 885 aaKnown RBP7.09□□□□□ -1.27
PRKDC-209ENST00000540819 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.09□□□□□ -1.27
PRKDC-209ENST00000540819 ZFYVE27Q5T4F4 411 aa7.09□□□□□ -1.27
PRKDC-209ENST00000540819 C16orf86Q6ZW13 317 aa7.09□□□□□ -1.27
PRKDC-209ENST00000540819 PNISRQ8TF01 805 aaKnown RBP7.09□□□□□ -1.27
PRKDC-209ENST00000540819 BSNDQ8WZ55 320 aa7.09□□□□□ -1.27
PRKDC-209ENST00000540819 FMNL2Q96PY5 1086 aa7.09□□□□□ -1.27
PRKDC-209ENST00000540819 CCDC113Q9H0I3 377 aa7.09□□□□□ -1.27
PRKDC-209ENST00000540819 CYP4F12Q9HCS2 524 aa7.09□□□□□ -1.27
PRKDC-209ENST00000540819 COPRSQ9NQ92 184 aa7.09□□□□□ -1.27
PRKDC-209ENST00000540819 BSDC1Q9NW68 430 aaPredicted RBP7.09□□□□□ -1.27
PRKDC-209ENST00000540819 TMEM260Q9NX78 707 aa7.09□□□□□ -1.27
PRKDC-209ENST00000540819 SOX13Q9UN79 622 aa7.09□□□□□ -1.27
PRKDC-209ENST00000540819 RNF114Q9Y508 228 aa7.09□□□□□ -1.27
PRKDC-209ENST00000540819 COMMD10Q9Y6G5 202 aa7.09□□□□□ -1.27
PRKDC-209ENST00000540819 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.09□□□□□ -1.27
PRKDC-209ENST00000540819 CPNE3O75131 537 aaKnown RBP7.08□□□□□ -1.28
PRKDC-209ENST00000540819 EDN3P14138 238 aa7.08□□□□□ -1.28
PRKDC-209ENST00000540819 OS9Q13438 667 aaPredicted RBP7.08□□□□□ -1.28
PRKDC-209ENST00000540819 COL9A2Q14055 689 aaPredicted RBP7.08□□□□□ -1.28
PRKDC-209ENST00000540819 KRT26Q7Z3Y9 468 aa7.08□□□□□ -1.28
PRKDC-209ENST00000540819 LILRB2Q8N423 598 aa7.08□□□□□ -1.28
PRKDC-209ENST00000540819 NME8Q8N427 588 aa7.08□□□□□ -1.28
PRKDC-209ENST00000540819 HNRNPLLQ8WVV9 542 aaKnown RBP7.08□□□□□ -1.28
PRKDC-209ENST00000540819 NXPE3Q969Y0 559 aa7.08□□□□□ -1.28
PRKDC-209ENST00000540819 MFSD14AQ96MC6 490 aa7.08□□□□□ -1.28
PRKDC-209ENST00000540819 HHIPQ96QV1 700 aa7.08□□□□□ -1.28
PRKDC-209ENST00000540819 OSBPL7Q9BZF2 842 aa7.08□□□□□ -1.28
PRKDC-209ENST00000540819 SRCIN1Q9C0H9 1055 aa7.08□□□□□ -1.28
PRKDC-209ENST00000540819 KANSL2Q9H9L4 492 aa7.08□□□□□ -1.28
PRKDC-209ENST00000540819 PRKAG3Q9UGI9 489 aa7.08□□□□□ -1.28
PRKDC-209ENST00000540819 EFR3BQ9Y2G0 817 aa7.08□□□□□ -1.28
PRKDC-209ENST00000540819 LEMD3Q9Y2U8 911 aa7.08□□□□□ -1.28
PRKDC-209ENST00000540819 THRAP3Q9Y2W1 955 aaKnown RBP7.08□□□□□ -1.28
PRKDC-209ENST00000540819 LAS1LQ9Y4W2 734 aaKnown RBP7.08□□□□□ -1.28
PRKDC-209ENST00000540819 MRVI1Q9Y6F6 885 aa7.08□□□□□ -1.28
PRKDC-209ENST00000540819 A6NHS1 94 aa7.07□□□□□ -1.28
PRKDC-209ENST00000540819 SOX1O00570 391 aaPredicted RBP7.07□□□□□ -1.28
PRKDC-209ENST00000540819 PLIN1O60240 522 aa7.07□□□□□ -1.28
PRKDC-209ENST00000540819 EIF4EBP3O60516 100 aaPredicted RBP7.07□□□□□ -1.28
PRKDC-209ENST00000540819 PHACTR2O75167 634 aa7.07□□□□□ -1.28
PRKDC-209ENST00000540819 HCLS1P14317 486 aaPredicted RBP7.07□□□□□ -1.28
PRKDC-209ENST00000540819 YBX3P16989 372 aaKnown RBP eCLIP7.07□□□□□ -1.28
PRKDC-209ENST00000540819 SOX9P48436 509 aa7.07□□□□□ -1.28
PRKDC-209ENST00000540819 USP11P51784 963 aa7.07□□□□□ -1.28
PRKDC-209ENST00000540819 NFKBIBQ15653 356 aa7.07□□□□□ -1.28
PRKDC-209ENST00000540819 FBXL6Q8N531 539 aa7.07□□□□□ -1.28
PRKDC-209ENST00000540819 ASAP3Q8TDY4 903 aa7.07□□□□□ -1.28
PRKDC-209ENST00000540819 RSRP1Q9BUV0 290 aa7.07□□□□□ -1.28
PRKDC-209ENST00000540819 NOC4LQ9BVI4 516 aaKnown RBP7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 94.4 ms