RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 CLRN2A0PK11 232 aa16.08■□□□□ 0.16
COLCA1-204ENST00000540738 F13A1P00488 732 aa16.08■□□□□ 0.16
COLCA1-204ENST00000540738 KCTD2Q14681 263 aa16.08■□□□□ 0.16
COLCA1-204ENST00000540738 IFI16Q16666 785 aaKnown RBP16.08■□□□□ 0.16
COLCA1-204ENST00000540738 ANKRD35Q8N283 1001 aa16.08■□□□□ 0.16
COLCA1-204ENST00000540738 HAUS7Q99871 368 aa16.08■□□□□ 0.16
COLCA1-204ENST00000540738 KIF5CO60282 957 aa16.08■□□□□ 0.16
COLCA1-204ENST00000540738 STRN3Q13033 797 aa16.08■□□□□ 0.16
COLCA1-204ENST00000540738 INTS4Q96HW7 963 aaKnown RBP16.08■□□□□ 0.16
COLCA1-204ENST00000540738 SPHKAPQ2M3C7 1700 aa16.08■□□□□ 0.16
COLCA1-204ENST00000540738 GRIN3BO60391 1043 aa16.08■□□□□ 0.16
COLCA1-204ENST00000540738 FLOT1O75955 427 aa16.08■□□□□ 0.16
COLCA1-204ENST00000540738 LRSAM1Q6UWE0 723 aa16.08■□□□□ 0.16
COLCA1-204ENST00000540738 C2orf69Q8N8R5 385 aa16.08■□□□□ 0.16
COLCA1-204ENST00000540738 AXIN2Q9Y2T1 843 aa16.08■□□□□ 0.16
COLCA1-204ENST00000540738 SETQ01105 290 aaPredicted RBP16.07■□□□□ 0.16
COLCA1-204ENST00000540738 TRIM6Q9C030 488 aaPredicted RBP16.07■□□□□ 0.16
COLCA1-204ENST00000540738 CHMP2AO43633 222 aa16.07■□□□□ 0.16
COLCA1-204ENST00000540738 FMNL3Q8IVF7 1028 aa16.07■□□□□ 0.16
COLCA1-204ENST00000540738 IFNL3Q8IZI9 196 aa16.07■□□□□ 0.16
COLCA1-204ENST00000540738 SNX21Q969T3 373 aa16.07■□□□□ 0.16
COLCA1-204ENST00000540738 ALS2CR12Q96Q35 445 aa16.07■□□□□ 0.16
COLCA1-204ENST00000540738 CCDC117Q8IWD4 279 aaPredicted RBP16.07■□□□□ 0.16
COLCA1-204ENST00000540738 PLVAPQ9BX97 442 aa16.07■□□□□ 0.16
COLCA1-204ENST00000540738 GDPD2Q9HCC8 539 aa16.07■□□□□ 0.16
COLCA1-204ENST00000540738 SEC31BQ9NQW1 1179 aa16.07■□□□□ 0.16
COLCA1-204ENST00000540738 PLEKHG2Q9H7P9 1386 aa16.07■□□□□ 0.16
COLCA1-204ENST00000540738 MACROD2A1Z1Q3 448 aa16.07■□□□□ 0.16
COLCA1-204ENST00000540738 ALAS1P13196 640 aa16.07■□□□□ 0.16
COLCA1-204ENST00000540738 CEP83Q9Y592 693 aa16.07■□□□□ 0.16
COLCA1-204ENST00000540738 SUSD4Q5VX71 490 aa16.06■□□□□ 0.16
COLCA1-204ENST00000540738 CNGA1P29973 690 aa16.06■□□□□ 0.16
COLCA1-204ENST00000540738 PHKA1P46020 1223 aa16.06■□□□□ 0.16
COLCA1-204ENST00000540738 GSDMDP57764 484 aa16.06■□□□□ 0.16
COLCA1-204ENST00000540738 NCAPG2Q86XI2 1143 aa16.06■□□□□ 0.16
COLCA1-204ENST00000540738 DHX37Q8IY37 1157 aaKnown RBP16.06■□□□□ 0.16
COLCA1-204ENST00000540738 ARID4AP29374 1257 aaPredicted RBP16.06■□□□□ 0.16
COLCA1-204ENST00000540738 BARGINQ6ZT62 677 aa16.06■□□□□ 0.16
COLCA1-204ENST00000540738 REXO1Q8N1G1 1221 aaKnown RBP16.06■□□□□ 0.16
COLCA1-204ENST00000540738 MLXIPQ9HAP2 919 aa16.06■□□□□ 0.16
COLCA1-204ENST00000540738 IQCA1LA6NCM1 817 aa16.06■□□□□ 0.16
COLCA1-204ENST00000540738 ACTN2P35609 894 aa16.06■□□□□ 0.16
COLCA1-204ENST00000540738 ZNF165P49910 485 aa16.06■□□□□ 0.16
COLCA1-204ENST00000540738 FAM47AQ5JRC9 791 aa16.06■□□□□ 0.16
COLCA1-204ENST00000540738 ARHGEF16Q5VV41 709 aa16.06■□□□□ 0.16
COLCA1-204ENST00000540738 EAF2Q96CJ1 260 aaPredicted RBP16.06■□□□□ 0.16
COLCA1-204ENST00000540738 USP17L8P0C7I0 530 aa16.05■□□□□ 0.16
COLCA1-204ENST00000540738 HOOK3Q86VS8 718 aa16.05■□□□□ 0.16
COLCA1-204ENST00000540738 CCDC112Q8NEF3 446 aa16.05■□□□□ 0.16
COLCA1-204ENST00000540738 USP26Q9BXU7 913 aa16.05■□□□□ 0.16
COLCA1-204ENST00000540738 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.05■□□□□ 0.16
COLCA1-204ENST00000540738 NEMFO60524 1076 aa16.05■□□□□ 0.16
COLCA1-204ENST00000540738 CCNT1O60563 726 aaKnown RBP16.05■□□□□ 0.16
COLCA1-204ENST00000540738 TMED8Q6PL24 325 aaPredicted RBP16.05■□□□□ 0.16
COLCA1-204ENST00000540738 CPLX3Q8WVH0 158 aa16.05■□□□□ 0.16
COLCA1-204ENST00000540738 CTNNBL1Q8WYA6 563 aaPredicted RBP16.05■□□□□ 0.16
COLCA1-204ENST00000540738 SLC10A4Q96EP9 437 aa16.05■□□□□ 0.16
COLCA1-204ENST00000540738 FNBP1Q96RU3 617 aa16.05■□□□□ 0.16
COLCA1-204ENST00000540738 SLFN13Q68D06 897 aa16.05■□□□□ 0.16
COLCA1-204ENST00000540738 PIK3AP1Q6ZUJ8 805 aa16.05■□□□□ 0.16
COLCA1-204ENST00000540738 ARHGEF1Q92888 912 aaKnown RBP16.05■□□□□ 0.16
COLCA1-204ENST00000540738 GLG1Q92896 1179 aa16.05■□□□□ 0.16
COLCA1-204ENST00000540738 TTC12Q9H892 705 aaPredicted RBP16.05■□□□□ 0.16
COLCA1-204ENST00000540738 PAFAH1B1P43034 410 aa16.05■□□□□ 0.16
COLCA1-204ENST00000540738 DPP9Q86TI2 863 aa16.05■□□□□ 0.16
COLCA1-204ENST00000540738 RNF181Q9P0P0 153 aa16.05■□□□□ 0.16
COLCA1-204ENST00000540738 GINS2Q9Y248 185 aa16.05■□□□□ 0.16
COLCA1-204ENST00000540738 NCOA3Q9Y6Q9 1424 aa16.05■□□□□ 0.16
COLCA1-204ENST00000540738 SLC8A3P57103 927 aa16.05■□□□□ 0.16
COLCA1-204ENST00000540738 NBPF3Q9H094 633 aa16.05■□□□□ 0.16
COLCA1-204ENST00000540738 SPATA31A1Q5TZJ5 1347 aa16.04■□□□□ 0.16
COLCA1-204ENST00000540738 CCDC169A6NNP5 214 aa16.04■□□□□ 0.16
COLCA1-204ENST00000540738 GCOM1H8Y6P7 765 aaPredicted RBP16.04■□□□□ 0.16
COLCA1-204ENST00000540738 POLR2MP0CAP2 368 aa16.04■□□□□ 0.16
COLCA1-204ENST00000540738 ZNF174Q15697 407 aa16.04■□□□□ 0.16
COLCA1-204ENST00000540738 ZSCAN10Q96SZ4 725 aaPredicted RBP16.04■□□□□ 0.16
COLCA1-204ENST00000540738 FAM47CQ5HY64 1035 aa16.04■□□□□ 0.16
COLCA1-204ENST00000540738 FRMD4BQ9Y2L6 1034 aa16.04■□□□□ 0.16
COLCA1-204ENST00000540738 NDUFB9Q9Y6M9 179 aa16.04■□□□□ 0.16
COLCA1-204ENST00000540738 SKIDA1Q1XH10 827 aa16.04■□□□□ 0.16
COLCA1-204ENST00000540738 PNMA3Q9UL41 463 aa16.04■□□□□ 0.16
COLCA1-204ENST00000540738 MRVI1Q9Y6F6 885 aa16.04■□□□□ 0.16
COLCA1-204ENST00000540738 AKR1B10O60218 316 aa16.03■□□□□ 0.16
COLCA1-204ENST00000540738 BMS1Q14692 1282 aaKnown RBP16.03■□□□□ 0.16
COLCA1-204ENST00000540738 OTUD6AQ7L8S5 288 aa16.03■□□□□ 0.16
COLCA1-204ENST00000540738 FBXO11Q86XK2 927 aa16.03■□□□□ 0.16
COLCA1-204ENST00000540738 OTUD7AQ8TE49 926 aaPredicted RBP16.03■□□□□ 0.16
COLCA1-204ENST00000540738 CDC42BPBQ9Y5S2 1711 aa16.03■□□□□ 0.16
COLCA1-204ENST00000540738 NCAPH2Q6IBW4 605 aa16.03■□□□□ 0.16
COLCA1-204ENST00000540738 PODNQ7Z5L7 613 aa16.03■□□□□ 0.16
COLCA1-204ENST00000540738 ZNF710Q8N1W2 664 aa16.03■□□□□ 0.16
COLCA1-204ENST00000540738 VWA3AA6NCI4 1184 aa16.03■□□□□ 0.16
COLCA1-204ENST00000540738 PDE4DQ08499 809 aa16.03■□□□□ 0.16
COLCA1-204ENST00000540738 DIP2BQ9P265 1576 aa16.03■□□□□ 0.16
COLCA1-204ENST00000540738 NOP2P46087 812 aaKnown RBP16.03■□□□□ 0.16
COLCA1-204ENST00000540738 CCDC97Q96F63 343 aaPredicted RBP16.03■□□□□ 0.16
COLCA1-204ENST00000540738 BRIP1Q9BX63 1249 aa16.03■□□□□ 0.16
COLCA1-204ENST00000540738 PUS3Q9BZE2 481 aaKnown RBP16.03■□□□□ 0.16
COLCA1-204ENST00000540738 GPATCH4Q5T3I0 446 aaKnown RBP16.02■□□□□ 0.16
COLCA1-204ENST00000540738 RC3H1Q5TC82 1133 aaKnown RBP16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms