RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 PTPRAP18433 802 aa14.32□□□□□ -0.12
SYNE1-238ENST00000540663 DYNLL1P63167 89 aaKnown RBP14.32□□□□□ -0.12
SYNE1-238ENST00000540663 TAF1CQ15572 869 aaPredicted RBP14.32□□□□□ -0.12
SYNE1-238ENST00000540663 FOXP4Q8IVH2 680 aaPredicted RBP14.32□□□□□ -0.12
SYNE1-238ENST00000540663 MIGA1Q8NAN2 632 aa14.32□□□□□ -0.12
SYNE1-238ENST00000540663 BOLA2Q9H3K6 86 aa14.32□□□□□ -0.12
SYNE1-238ENST00000540663 MAGEB6P1A0A0J9YX57 407 aa14.31□□□□□ -0.12
SYNE1-238ENST00000540663 BTBD19C9JJ37 291 aa14.31□□□□□ -0.12
SYNE1-238ENST00000540663 USP5P45974 858 aa14.31□□□□□ -0.12
SYNE1-238ENST00000540663 ANKRD23Q86SG2 305 aa14.31□□□□□ -0.12
SYNE1-238ENST00000540663 FAM43AQ8N2R8 423 aa14.31□□□□□ -0.12
SYNE1-238ENST00000540663 ERO1AQ96HE7 468 aa14.31□□□□□ -0.12
SYNE1-238ENST00000540663 RIOK1Q9BRS2 568 aaKnown RBP14.31□□□□□ -0.12
SYNE1-238ENST00000540663 TRIM34Q9BYJ4 488 aa14.31□□□□□ -0.12
SYNE1-238ENST00000540663 CRNKL1Q9BZJ0 848 aaKnown RBP14.31□□□□□ -0.12
SYNE1-238ENST00000540663 GINM1Q9NU53 330 aa14.31□□□□□ -0.12
SYNE1-238ENST00000540663 ZHX2Q9Y6X8 837 aa14.31□□□□□ -0.12
SYNE1-238ENST00000540663 ZNF532Q9HCE3 1301 aa14.31□□□□□ -0.12
SYNE1-238ENST00000540663 TCRBV5S4A2TA0A5A2 114 aa14.3□□□□□ -0.12
SYNE1-238ENST00000540663 CAPN15O75808 1086 aa14.3□□□□□ -0.12
SYNE1-238ENST00000540663 HDAC1Q13547 482 aaPredicted RBP14.3□□□□□ -0.12
SYNE1-238ENST00000540663 ZSCAN25Q6NSZ9 544 aa14.3□□□□□ -0.12
SYNE1-238ENST00000540663 FASTKD5Q7L8L6 764 aaKnown RBP14.3□□□□□ -0.12
SYNE1-238ENST00000540663 CRACR2BQ8N4Y2 399 aaPredicted RBP14.3□□□□□ -0.12
SYNE1-238ENST00000540663 AFG3L2Q9Y4W6 797 aa14.3□□□□□ -0.12
SYNE1-238ENST00000540663 A0A0G2JLL6 359 aaPredicted RBP14.29□□□□□ -0.12
SYNE1-238ENST00000540663 FAM196BA6NMK8 535 aa14.29□□□□□ -0.12
SYNE1-238ENST00000540663 ADD2P35612 726 aa14.29□□□□□ -0.12
SYNE1-238ENST00000540663 CAP2P40123 477 aa14.29□□□□□ -0.12
SYNE1-238ENST00000540663 SP3Q02447 781 aa14.29□□□□□ -0.12
SYNE1-238ENST00000540663 MOGSQ13724 837 aa14.29□□□□□ -0.12
SYNE1-238ENST00000540663 ARHGEF6Q15052 776 aa14.29□□□□□ -0.12
SYNE1-238ENST00000540663 PRRT2Q7Z6L0 340 aaPredicted RBP14.29□□□□□ -0.12
SYNE1-238ENST00000540663 EDC3Q96F86 508 aaKnown RBP14.29□□□□□ -0.12
SYNE1-238ENST00000540663 EHD4Q9H223 541 aa14.29□□□□□ -0.12
SYNE1-238ENST00000540663 ZBTB47Q9UFB7 747 aaPredicted RBP14.29□□□□□ -0.12
SYNE1-238ENST00000540663 SAP30BPQ9UHR5 308 aaKnown RBP14.29□□□□□ -0.12
SYNE1-238ENST00000540663 PALD1Q9ULE6 856 aa14.29□□□□□ -0.12
SYNE1-238ENST00000540663 TTC41PQ6P2S7 1318 aa14.29□□□□□ -0.12
SYNE1-238ENST00000540663 SIPA1L1O43166 1804 aa14.29□□□□□ -0.12
SYNE1-238ENST00000540663 TLR2O60603 784 aa14.28□□□□□ -0.12
SYNE1-238ENST00000540663 ASNSP08243 561 aa14.28□□□□□ -0.12
SYNE1-238ENST00000540663 SLURP2P0DP57 97 aa14.28□□□□□ -0.12
SYNE1-238ENST00000540663 UBE3CQ15386 1083 aa14.28□□□□□ -0.12
SYNE1-238ENST00000540663 TTC6Q86TZ1 520 aa14.28□□□□□ -0.12
SYNE1-238ENST00000540663 GCC1Q96CN9 775 aa14.28□□□□□ -0.12
SYNE1-238ENST00000540663 TAOK2Q9UL54 1235 aa14.28□□□□□ -0.12
SYNE1-238ENST00000540663 SLC45A1Q9Y2W3 748 aa14.28□□□□□ -0.12
SYNE1-238ENST00000540663 PHIPQ8WWQ0 1821 aa14.27□□□□□ -0.12
SYNE1-238ENST00000540663 USP17L5A8MUK1 530 aa14.27□□□□□ -0.13
SYNE1-238ENST00000540663 PDHXO00330 501 aa14.27□□□□□ -0.13
SYNE1-238ENST00000540663 ERC2O15083 957 aa14.27□□□□□ -0.13
SYNE1-238ENST00000540663 FBXO46Q6PJ61 603 aaPredicted RBP14.27□□□□□ -0.13
SYNE1-238ENST00000540663 ZNF280CQ8ND82 737 aa14.27□□□□□ -0.13
SYNE1-238ENST00000540663 PARK7Q99497 189 aaKnown RBP14.27□□□□□ -0.13
SYNE1-238ENST00000540663 DNAJC18Q9H819 358 aa14.27□□□□□ -0.13
SYNE1-238ENST00000540663 AS3MTQ9HBK9 375 aa14.27□□□□□ -0.13
SYNE1-238ENST00000540663 SERPINB13Q9UIV8 391 aa14.27□□□□□ -0.13
SYNE1-238ENST00000540663 MYH1P12882 1939 aa14.27□□□□□ -0.13
SYNE1-238ENST00000540663 DDX60LQ5H9U9 1706 aaKnown RBP14.27□□□□□ -0.13
SYNE1-238ENST00000540663 MYH7P12883 1935 aa14.26□□□□□ -0.13
SYNE1-238ENST00000540663 TRIM75PA6NK02 468 aa14.26□□□□□ -0.13
SYNE1-238ENST00000540663 GLRX3O76003 335 aaKnown RBP14.26□□□□□ -0.13
SYNE1-238ENST00000540663 LRRFIP1Q32MZ4 808 aaKnown RBP14.26□□□□□ -0.13
SYNE1-238ENST00000540663 GPAT2Q6NUI2 795 aa14.26□□□□□ -0.13
SYNE1-238ENST00000540663 KBTBD3Q8NAB2 608 aa14.26□□□□□ -0.13
SYNE1-238ENST00000540663 PROCA1Q8NCQ7 364 aaPredicted RBP14.26□□□□□ -0.13
SYNE1-238ENST00000540663 WDR18Q9BV38 432 aa14.26□□□□□ -0.13
SYNE1-238ENST00000540663 ATP8A2Q9NTI2 1148 aa14.26□□□□□ -0.13
SYNE1-238ENST00000540663 ATAD5Q96QE3 1844 aa14.26□□□□□ -0.13
SYNE1-238ENST00000540663 NAV1Q8NEY1 1877 aa14.25□□□□□ -0.13
SYNE1-238ENST00000540663 CCDC85CA6NKD9 419 aa14.25□□□□□ -0.13
SYNE1-238ENST00000540663 MBD4O95243 580 aa14.25□□□□□ -0.13
SYNE1-238ENST00000540663 POLR3DP05423 398 aaPredicted RBP14.25□□□□□ -0.13
SYNE1-238ENST00000540663 ZFYP08048 801 aaPredicted RBP14.25□□□□□ -0.13
SYNE1-238ENST00000540663 RRP1BQ14684 758 aaKnown RBP14.25□□□□□ -0.13
SYNE1-238ENST00000540663 TATDN1Q6P1N9 297 aa14.25□□□□□ -0.13
SYNE1-238ENST00000540663 GADL1Q6ZQY3 521 aa14.25□□□□□ -0.13
SYNE1-238ENST00000540663 OTOP1Q7RTM1 612 aa14.25□□□□□ -0.13
SYNE1-238ENST00000540663 LCORLQ8N3X6 602 aa14.25□□□□□ -0.13
SYNE1-238ENST00000540663 CD99L2Q8TCZ2 262 aa14.25□□□□□ -0.13
SYNE1-238ENST00000540663 RWDD1Q9H446 243 aaPredicted RBP14.25□□□□□ -0.13
SYNE1-238ENST00000540663 EFCC1Q9HA90 598 aa14.25□□□□□ -0.13
SYNE1-238ENST00000540663 AGTPBP1Q9UPW5 1226 aa14.25□□□□□ -0.13
SYNE1-238ENST00000540663 TRIM17Q9Y577 477 aa14.25□□□□□ -0.13
SYNE1-238ENST00000540663 PTPRFP10586 1907 aa14.25□□□□□ -0.13
SYNE1-238ENST00000540663 ADGRA2Q96PE1 1338 aa14.24□□□□□ -0.13
SYNE1-238ENST00000540663 MX1P20591 662 aa14.24□□□□□ -0.13
SYNE1-238ENST00000540663 SPP2Q13103 211 aa14.24□□□□□ -0.13
SYNE1-238ENST00000540663 PABPC4Q13310 644 aaKnown RBP eCLIP14.24□□□□□ -0.13
SYNE1-238ENST00000540663 KIF22Q14807 665 aa14.24□□□□□ -0.13
SYNE1-238ENST00000540663 C17orf99Q6UX52 265 aa14.24□□□□□ -0.13
SYNE1-238ENST00000540663 DDRGK1Q96HY6 314 aa14.24□□□□□ -0.13
SYNE1-238ENST00000540663 ARMT1Q9H993 441 aa14.24□□□□□ -0.13
SYNE1-238ENST00000540663 DCP1AQ9NPI6 582 aaPredicted RBP14.24□□□□□ -0.13
SYNE1-238ENST00000540663 MCM9Q9NXL9 1143 aa14.24□□□□□ -0.13
SYNE1-238ENST00000540663 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.24□□□□□ -0.13
SYNE1-238ENST00000540663 ZBTB21Q9ULJ3 1066 aa14.24□□□□□ -0.13
SYNE1-238ENST00000540663 HPS5Q9UPZ3 1129 aa14.24□□□□□ -0.13
SYNE1-238ENST00000540663 HTTP42858 3142 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms