RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 MDM2Q00987 491 aaPredicted RBP23.25■■□□□ 1.31
TMEM260-203ENST00000539559 TBX2Q13207 712 aaPredicted RBP23.25■■□□□ 1.31
TMEM260-203ENST00000539559 TMEM67Q5HYA8 995 aa23.25■■□□□ 1.31
TMEM260-203ENST00000539559 MRPL44Q9H9J2 332 aaKnown RBP23.25■■□□□ 1.31
TMEM260-203ENST00000539559 WWC3Q9ULE0 1092 aa23.25■■□□□ 1.31
TMEM260-203ENST00000539559 MAPK8IP2Q13387 824 aaPredicted RBP23.24■■□□□ 1.31
TMEM260-203ENST00000539559 DHX8Q14562 1220 aaKnown RBP23.24■■□□□ 1.31
TMEM260-203ENST00000539559 IGDCC4Q8TDY8 1250 aa23.24■■□□□ 1.31
TMEM260-203ENST00000539559 CPLX3Q8WVH0 158 aa23.24■■□□□ 1.31
TMEM260-203ENST00000539559 ZNF532Q9HCE3 1301 aa23.24■■□□□ 1.31
TMEM260-203ENST00000539559 GPTP24298 496 aa23.24■■□□□ 1.31
TMEM260-203ENST00000539559 MAP3K9P80192 1104 aa23.24■■□□□ 1.31
TMEM260-203ENST00000539559 IFIT5Q13325 482 aaKnown RBP23.24■■□□□ 1.31
TMEM260-203ENST00000539559 KRI1Q8N9T8 703 aaKnown RBP23.24■■□□□ 1.31
TMEM260-203ENST00000539559 SMARCE1Q969G3 411 aa23.24■■□□□ 1.31
TMEM260-203ENST00000539559 SRRTQ9BXP5 876 aaKnown RBP23.24■■□□□ 1.31
TMEM260-203ENST00000539559 PARD6BQ9BYG5 372 aa23.24■■□□□ 1.31
TMEM260-203ENST00000539559 LY9Q9HBG7 655 aa23.24■■□□□ 1.31
TMEM260-203ENST00000539559 LZTFL1Q9NQ48 299 aa23.24■■□□□ 1.31
TMEM260-203ENST00000539559 ATG3Q9NT62 314 aa23.24■■□□□ 1.31
TMEM260-203ENST00000539559 TACC3Q9Y6A5 838 aa23.24■■□□□ 1.31
TMEM260-203ENST00000539559 CDKL5O76039 1030 aa23.23■■□□□ 1.31
TMEM260-203ENST00000539559 CASP1P29466 404 aa23.23■■□□□ 1.31
TMEM260-203ENST00000539559 POSTNQ15063 836 aa23.23■■□□□ 1.31
TMEM260-203ENST00000539559 CPLX2Q6PUV4 134 aaKnown RBP23.23■■□□□ 1.31
TMEM260-203ENST00000539559 KIFC2Q96AC6 838 aa23.23■■□□□ 1.31
TMEM260-203ENST00000539559 MRFAP1Q9Y605 127 aa23.23■■□□□ 1.31
TMEM260-203ENST00000539559 PHLPP1O60346 1717 aa23.23■■□□□ 1.31
TMEM260-203ENST00000539559 SOWAHDA6NJG2 315 aa23.23■■□□□ 1.31
TMEM260-203ENST00000539559 TOM1O60784 492 aa23.23■■□□□ 1.31
TMEM260-203ENST00000539559 TFRCP02786 760 aaKnown RBP23.23■■□□□ 1.31
TMEM260-203ENST00000539559 NR5A1Q13285 461 aa23.23■■□□□ 1.31
TMEM260-203ENST00000539559 MYO5AQ9Y4I1 1855 aaKnown RBP23.22■■□□□ 1.31
TMEM260-203ENST00000539559 RRP12Q5JTH9 1297 aaKnown RBP23.22■■□□□ 1.31
TMEM260-203ENST00000539559 SPECC1LQ69YQ0 1117 aa23.22■■□□□ 1.31
TMEM260-203ENST00000539559 CCDC12Q8WUD4 166 aaPredicted RBP23.22■■□□□ 1.31
TMEM260-203ENST00000539559 BBXQ8WY36 941 aaPredicted RBP23.22■■□□□ 1.31
TMEM260-203ENST00000539559 FAM237AA0A1B0GTK4 181 aa23.22■■□□□ 1.31
TMEM260-203ENST00000539559 TEX33O43247 280 aa23.22■■□□□ 1.31
TMEM260-203ENST00000539559 COBLO75128 1261 aa23.22■■□□□ 1.31
TMEM260-203ENST00000539559 LDHAL6AQ6ZMR3 332 aa23.22■■□□□ 1.31
TMEM260-203ENST00000539559 MPHOSPH8Q99549 860 aa23.22■■□□□ 1.31
TMEM260-203ENST00000539559 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.22■■□□□ 1.31
TMEM260-203ENST00000539559 PCDHB6Q9Y5E3 794 aa23.22■■□□□ 1.31
TMEM260-203ENST00000539559 PLCH1Q4KWH8 1693 aa23.22■■□□□ 1.31
TMEM260-203ENST00000539559 SPEF2Q9C093 1822 aa23.22■■□□□ 1.31
TMEM260-203ENST00000539559 STX17P56962 302 aa23.21■■□□□ 1.31
TMEM260-203ENST00000539559 KLHL10Q6JEL2 608 aa23.21■■□□□ 1.31
TMEM260-203ENST00000539559 TICAM2Q86XR7 235 aa23.21■■□□□ 1.31
TMEM260-203ENST00000539559 ISCA1Q9BUE6 129 aa23.21■■□□□ 1.31
TMEM260-203ENST00000539559 CDCA7Q9BWT1 371 aaPredicted RBP23.21■■□□□ 1.31
TMEM260-203ENST00000539559 GREM2Q9H772 168 aa23.21■■□□□ 1.31
TMEM260-203ENST00000539559 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.21■■□□□ 1.31
TMEM260-203ENST00000539559 CALCOCO1Q9P1Z2 691 aa23.21■■□□□ 1.31
TMEM260-203ENST00000539559 IFIT3O14879 490 aaKnown RBP23.21■■□□□ 1.31
TMEM260-203ENST00000539559 NOSTRINQ8IVI9 506 aa23.21■■□□□ 1.31
TMEM260-203ENST00000539559 DIS3L2Q8IYB7 885 aaKnown RBP23.21■■□□□ 1.31
TMEM260-203ENST00000539559 HELBQ8NG08 1087 aaPredicted RBP23.21■■□□□ 1.31
TMEM260-203ENST00000539559 ZSWIM5Q9P217 1185 aa23.21■■□□□ 1.31
TMEM260-203ENST00000539559 NUP188Q5SRE5 1749 aa23.21■■□□□ 1.31
TMEM260-203ENST00000539559 SNAP23O00161 211 aa23.2■■□□□ 1.3
TMEM260-203ENST00000539559 PHKA1P46020 1223 aa23.2■■□□□ 1.3
TMEM260-203ENST00000539559 PIP4K2BP78356 416 aa23.2■■□□□ 1.3
TMEM260-203ENST00000539559 SSRP1Q08945 709 aaKnown RBP23.2■■□□□ 1.3
TMEM260-203ENST00000539559 TCIRG1Q13488 830 aa23.2■■□□□ 1.3
TMEM260-203ENST00000539559 SMC1AQ14683 1233 aaKnown RBP23.2■■□□□ 1.3
TMEM260-203ENST00000539559 FCHSD1Q86WN1 690 aa23.2■■□□□ 1.3
TMEM260-203ENST00000539559 TOMM22Q9NS69 142 aa23.2■■□□□ 1.3
TMEM260-203ENST00000539559 PUF60Q9UHX1 559 aaKnown RBP23.2■■□□□ 1.3
TMEM260-203ENST00000539559 DDX60Q8IY21 1712 aaKnown RBP23.2■■□□□ 1.3
TMEM260-203ENST00000539559 STARD3NLO95772 234 aa23.2■■□□□ 1.3
TMEM260-203ENST00000539559 ZNF18P17022 549 aa23.2■■□□□ 1.3
TMEM260-203ENST00000539559 SLC12A7Q9Y666 1083 aa23.2■■□□□ 1.3
TMEM260-203ENST00000539559 VGLL3A8MV65 326 aa23.19■■□□□ 1.3
TMEM260-203ENST00000539559 STX10O60499 249 aa23.19■■□□□ 1.3
TMEM260-203ENST00000539559 OXER1Q8TDS5 423 aa23.19■■□□□ 1.3
TMEM260-203ENST00000539559 FBXO2Q9UK22 296 aaPredicted RBP23.19■■□□□ 1.3
TMEM260-203ENST00000539559 ECM29Q5VYK3 1845 aa23.19■■□□□ 1.3
TMEM260-203ENST00000539559 WDR19Q8NEZ3 1342 aa23.19■■□□□ 1.3
TMEM260-203ENST00000539559 PDE6AP16499 860 aa23.19■■□□□ 1.3
TMEM260-203ENST00000539559 RSRC2Q7L4I2 434 aaKnown RBP23.19■■□□□ 1.3
TMEM260-203ENST00000539559 DNAJC10Q8IXB1 793 aa23.19■■□□□ 1.3
TMEM260-203ENST00000539559 CNNM1Q9NRU3 951 aa23.19■■□□□ 1.3
TMEM260-203ENST00000539559 THRAP3Q9Y2W1 955 aaKnown RBP23.19■■□□□ 1.3
TMEM260-203ENST00000539559 BCL9O00512 1426 aa23.19■■□□□ 1.3
TMEM260-203ENST00000539559 RIC1Q4ADV7 1423 aa23.19■■□□□ 1.3
TMEM260-203ENST00000539559 CAPN2P17655 700 aa23.18■■□□□ 1.3
TMEM260-203ENST00000539559 ITGA6P23229 1130 aa23.18■■□□□ 1.3
TMEM260-203ENST00000539559 GTF2E1P29083 439 aaPredicted RBP23.18■■□□□ 1.3
TMEM260-203ENST00000539559 RAI14Q9P0K7 980 aa23.18■■□□□ 1.3
TMEM260-203ENST00000539559 SMYD4Q8IYR2 804 aaPredicted RBP23.18■■□□□ 1.3
TMEM260-203ENST00000539559 GPR161Q8N6U8 529 aaKnown RBP23.18■■□□□ 1.3
TMEM260-203ENST00000539559 EPB41L4AQ9HCS5 686 aaPredicted RBP23.18■■□□□ 1.3
TMEM260-203ENST00000539559 RIPOR2Q9Y4F9 1068 aa23.18■■□□□ 1.3
TMEM260-203ENST00000539559 SPATA31A1Q5TZJ5 1347 aa23.18■■□□□ 1.3
TMEM260-203ENST00000539559 FAM205CA6NFA0 338 aa23.17■■□□□ 1.3
TMEM260-203ENST00000539559 NUTM2BA6NNL0 878 aaPredicted RBP23.17■■□□□ 1.3
TMEM260-203ENST00000539559 NUTM2EB1AL46 878 aaPredicted RBP23.17■■□□□ 1.3
TMEM260-203ENST00000539559 AFMP43652 599 aa23.17■■□□□ 1.3
TMEM260-203ENST00000539559 NUTM2AQ8IVF1 878 aaPredicted RBP23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms