RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 SLC9C2Q5TAH2 1124 aa23.05■■□□□ 1.28
CLIP1-211ENST00000539080 METTL16Q86W50 562 aaKnown RBP23.05■■□□□ 1.28
CLIP1-211ENST00000539080 FOXP4Q8IVH2 680 aaPredicted RBP23.05■■□□□ 1.28
CLIP1-211ENST00000539080 HAUS7Q99871 368 aa23.05■■□□□ 1.28
CLIP1-211ENST00000539080 TBC1D2Q9BYX2 928 aa23.05■■□□□ 1.28
CLIP1-211ENST00000539080 BCL11AQ9H165 835 aa23.05■■□□□ 1.28
CLIP1-211ENST00000539080 PAG1Q9NWQ8 432 aa23.05■■□□□ 1.28
CLIP1-211ENST00000539080 AFG3L2Q9Y4W6 797 aa23.05■■□□□ 1.28
CLIP1-211ENST00000539080 ATAD5Q96QE3 1844 aa23.04■■□□□ 1.28
CLIP1-211ENST00000539080 TLR2O60603 784 aa23.04■■□□□ 1.28
CLIP1-211ENST00000539080 HLA-DOAP06340 250 aa23.04■■□□□ 1.28
CLIP1-211ENST00000539080 PDE6AP16499 860 aa23.04■■□□□ 1.28
CLIP1-211ENST00000539080 FASTKD5Q7L8L6 764 aaKnown RBP23.04■■□□□ 1.28
CLIP1-211ENST00000539080 BOLA2Q9H3K6 86 aa23.04■■□□□ 1.28
CLIP1-211ENST00000539080 PCDHB15Q9Y5E8 787 aa23.04■■□□□ 1.28
CLIP1-211ENST00000539080 A0A0G2JLL6 359 aaPredicted RBP23.03■■□□□ 1.28
CLIP1-211ENST00000539080 FAM196BA6NMK8 535 aa23.03■■□□□ 1.28
CLIP1-211ENST00000539080 SMARCA5O60264 1052 aaPredicted RBP23.03■■□□□ 1.28
CLIP1-211ENST00000539080 CAP2P40123 477 aa23.03■■□□□ 1.28
CLIP1-211ENST00000539080 USP5P45974 858 aa23.03■■□□□ 1.28
CLIP1-211ENST00000539080 MOGSQ13724 837 aa23.03■■□□□ 1.28
CLIP1-211ENST00000539080 FBXO46Q6PJ61 603 aaPredicted RBP23.03■■□□□ 1.28
CLIP1-211ENST00000539080 PRRT2Q7Z6L0 340 aaPredicted RBP23.03■■□□□ 1.28
CLIP1-211ENST00000539080 RIOK1Q9BRS2 568 aaKnown RBP23.03■■□□□ 1.28
CLIP1-211ENST00000539080 PALD1Q9ULE6 856 aa23.03■■□□□ 1.28
CLIP1-211ENST00000539080 MYH1P12882 1939 aa23.02■■□□□ 1.28
CLIP1-211ENST00000539080 MAGEB6P1A0A0J9YX57 407 aa23.02■■□□□ 1.28
CLIP1-211ENST00000539080 TRIM34Q9BYJ4 488 aa23.02■■□□□ 1.28
CLIP1-211ENST00000539080 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.02■■□□□ 1.28
CLIP1-211ENST00000539080 ZNF532Q9HCE3 1301 aa23.02■■□□□ 1.28
CLIP1-211ENST00000539080 PTPRFP10586 1907 aa23.02■■□□□ 1.28
CLIP1-211ENST00000539080 TCRBV5S4A2TA0A5A2 114 aa23.01■■□□□ 1.27
CLIP1-211ENST00000539080 PDHXO00330 501 aa23.01■■□□□ 1.27
CLIP1-211ENST00000539080 AAMPQ13685 434 aa23.01■■□□□ 1.27
CLIP1-211ENST00000539080 ARHGEF6Q15052 776 aa23.01■■□□□ 1.27
CLIP1-211ENST00000539080 CRACR2BQ8N4Y2 399 aaPredicted RBP23.01■■□□□ 1.27
CLIP1-211ENST00000539080 GPATCH3Q96I76 525 aa23.01■■□□□ 1.27
CLIP1-211ENST00000539080 ECHDC1Q9NTX5 307 aa23.01■■□□□ 1.27
CLIP1-211ENST00000539080 GINM1Q9NU53 330 aa23.01■■□□□ 1.27
CLIP1-211ENST00000539080 OTOP1Q7RTM1 612 aa23■■□□□ 1.27
CLIP1-211ENST00000539080 CD99L2Q8TCZ2 262 aa23■■□□□ 1.27
CLIP1-211ENST00000539080 EDC3Q96F86 508 aaKnown RBP23■■□□□ 1.27
CLIP1-211ENST00000539080 CRBNQ96SW2 442 aa23■■□□□ 1.27
CLIP1-211ENST00000539080 HPS5Q9UPZ3 1129 aa23■■□□□ 1.27
CLIP1-211ENST00000539080 SLC45A1Q9Y2W3 748 aa23■■□□□ 1.27
CLIP1-211ENST00000539080 TRIM17Q9Y577 477 aa23■■□□□ 1.27
CLIP1-211ENST00000539080 DDX60LQ5H9U9 1706 aaKnown RBP22.99■■□□□ 1.27
CLIP1-211ENST00000539080 GPAT2Q6NUI2 795 aa22.99■■□□□ 1.27
CLIP1-211ENST00000539080 TTC6Q86TZ1 520 aa22.99■■□□□ 1.27
CLIP1-211ENST00000539080 PARK7Q99497 189 aaKnown RBP22.99■■□□□ 1.27
CLIP1-211ENST00000539080 CRNKL1Q9BZJ0 848 aaKnown RBP22.99■■□□□ 1.27
CLIP1-211ENST00000539080 EHD4Q9H223 541 aa22.99■■□□□ 1.27
CLIP1-211ENST00000539080 DNAJC18Q9H819 358 aa22.99■■□□□ 1.27
CLIP1-211ENST00000539080 SAP30BPQ9UHR5 308 aaKnown RBP22.99■■□□□ 1.27
CLIP1-211ENST00000539080 MYH7P12883 1935 aa22.99■■□□□ 1.27
CLIP1-211ENST00000539080 USP17L5A8MUK1 530 aa22.98■■□□□ 1.27
CLIP1-211ENST00000539080 ASNSP08243 561 aa22.98■■□□□ 1.27
CLIP1-211ENST00000539080 ADD2P35612 726 aa22.98■■□□□ 1.27
CLIP1-211ENST00000539080 ZSCAN25Q6NSZ9 544 aa22.98■■□□□ 1.27
CLIP1-211ENST00000539080 ZNF280CQ8ND82 737 aa22.98■■□□□ 1.27
CLIP1-211ENST00000539080 EFCC1Q9HA90 598 aa22.98■■□□□ 1.27
CLIP1-211ENST00000539080 AS3MTQ9HBK9 375 aa22.98■■□□□ 1.27
CLIP1-211ENST00000539080 NAV1Q8NEY1 1877 aa22.98■■□□□ 1.27
CLIP1-211ENST00000539080 TRIM75PA6NK02 468 aa22.97■■□□□ 1.27
CLIP1-211ENST00000539080 RRP1BQ14684 758 aaKnown RBP22.97■■□□□ 1.27
CLIP1-211ENST00000539080 UBE3CQ15386 1083 aa22.97■■□□□ 1.27
CLIP1-211ENST00000539080 C17orf99Q6UX52 265 aa22.97■■□□□ 1.27
CLIP1-211ENST00000539080 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.97■■□□□ 1.27
CLIP1-211ENST00000539080 SERPINB13Q9UIV8 391 aa22.97■■□□□ 1.27
CLIP1-211ENST00000539080 ADGRA2Q96PE1 1338 aa22.97■■□□□ 1.27
CLIP1-211ENST00000539080 KIF22Q14807 665 aa22.96■■□□□ 1.27
CLIP1-211ENST00000539080 GADL1Q6ZQY3 521 aa22.96■■□□□ 1.27
CLIP1-211ENST00000539080 PROCA1Q8NCQ7 364 aaPredicted RBP22.96■■□□□ 1.27
CLIP1-211ENST00000539080 LOC285556D6RIA3 1793 aa22.96■■□□□ 1.27
CLIP1-211ENST00000539080 RGS19P49795 217 aa22.95■■□□□ 1.26
CLIP1-211ENST00000539080 SPP2Q13103 211 aa22.95■■□□□ 1.26
CLIP1-211ENST00000539080 TTC41PQ6P2S7 1318 aa22.95■■□□□ 1.26
CLIP1-211ENST00000539080 CCDC84Q86UT8 332 aaPredicted RBP22.95■■□□□ 1.26
CLIP1-211ENST00000539080 WDR18Q9BV38 432 aa22.95■■□□□ 1.26
CLIP1-211ENST00000539080 AGTPBP1Q9UPW5 1226 aa22.95■■□□□ 1.26
CLIP1-211ENST00000539080 PTPN22Q9Y2R2 807 aa22.95■■□□□ 1.26
CLIP1-211ENST00000539080 GNRH1P01148 92 aa22.94■■□□□ 1.26
CLIP1-211ENST00000539080 LACTBP83111 547 aaPredicted RBP22.94■■□□□ 1.26
CLIP1-211ENST00000539080 HDAC1Q13547 482 aaPredicted RBP22.94■■□□□ 1.26
CLIP1-211ENST00000539080 TATDN1Q6P1N9 297 aa22.94■■□□□ 1.26
CLIP1-211ENST00000539080 LCORLQ8N3X6 602 aa22.94■■□□□ 1.26
CLIP1-211ENST00000539080 TAOK2Q9UL54 1235 aa22.94■■□□□ 1.26
CLIP1-211ENST00000539080 SH3D19Q5HYK7 790 aa22.93■■□□□ 1.26
CLIP1-211ENST00000539080 GCC1Q96CN9 775 aa22.93■■□□□ 1.26
CLIP1-211ENST00000539080 POLR3DP05423 398 aaPredicted RBP22.92■■□□□ 1.26
CLIP1-211ENST00000539080 SLC4A8Q2Y0W8 1093 aa22.92■■□□□ 1.26
CLIP1-211ENST00000539080 KBTBD3Q8NAB2 608 aa22.92■■□□□ 1.26
CLIP1-211ENST00000539080 DCP1AQ9NPI6 582 aaPredicted RBP22.92■■□□□ 1.26
CLIP1-211ENST00000539080 ATP8A2Q9NTI2 1148 aa22.92■■□□□ 1.26
CLIP1-211ENST00000539080 MCM9Q9NXL9 1143 aa22.92■■□□□ 1.26
CLIP1-211ENST00000539080 CPA4Q9UI42 421 aa22.92■■□□□ 1.26
CLIP1-211ENST00000539080 PNMA3Q9UL41 463 aa22.92■■□□□ 1.26
CLIP1-211ENST00000539080 ZBTB21Q9ULJ3 1066 aa22.92■■□□□ 1.26
CLIP1-211ENST00000539080 ERC2O15083 957 aa22.91■■□□□ 1.26
CLIP1-211ENST00000539080 MBD4O95243 580 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 182.1 ms