RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 SMIM22K7EJ46 135 aa12.53□□□□□ -0.4
CLIP1-210ENST00000538120 NPHP1O15259 732 aa12.53□□□□□ -0.4
CLIP1-210ENST00000538120 TDO2P48775 406 aa12.53□□□□□ -0.4
CLIP1-210ENST00000538120 DNTTIP2Q5QJE6 756 aaKnown RBP12.53□□□□□ -0.4
CLIP1-210ENST00000538120 NSUN4Q96CB9 384 aaKnown RBP12.53□□□□□ -0.4
CLIP1-210ENST00000538120 KDM4AO75164 1064 aa12.53□□□□□ -0.4
CLIP1-210ENST00000538120 ADCY5O95622 1261 aa12.53□□□□□ -0.4
CLIP1-210ENST00000538120 SERPINB2P05120 415 aa12.53□□□□□ -0.4
CLIP1-210ENST00000538120 CRY2Q49AN0 593 aa12.53□□□□□ -0.4
CLIP1-210ENST00000538120 SCAND2PQ9GZW5 306 aaPredicted RBP12.53□□□□□ -0.4
CLIP1-210ENST00000538120 GUCY1B3Q02153 619 aa12.52□□□□□ -0.4
CLIP1-210ENST00000538120 MECOMQ03112 1051 aa12.52□□□□□ -0.4
CLIP1-210ENST00000538120 DDR1Q08345 913 aa12.52□□□□□ -0.4
CLIP1-210ENST00000538120 APOA5Q6Q788 366 aa12.52□□□□□ -0.4
CLIP1-210ENST00000538120 SGMS1Q86VZ5 419 aa12.52□□□□□ -0.4
CLIP1-210ENST00000538120 SPATA32Q96LK8 384 aa12.52□□□□□ -0.4
CLIP1-210ENST00000538120 FAM217BQ9NTX9 383 aaPredicted RBP12.52□□□□□ -0.4
CLIP1-210ENST00000538120 KIF3AQ9Y496 699 aa12.52□□□□□ -0.4
CLIP1-210ENST00000538120 EP400Q96L91 3159 aa12.52□□□□□ -0.4
CLIP1-210ENST00000538120 DHX16O60231 1041 aaKnown RBP12.52□□□□□ -0.41
CLIP1-210ENST00000538120 PLCG2P16885 1265 aa12.52□□□□□ -0.41
CLIP1-210ENST00000538120 CDC27P30260 824 aa12.52□□□□□ -0.41
CLIP1-210ENST00000538120 PPARAQ07869 468 aa12.52□□□□□ -0.41
CLIP1-210ENST00000538120 TXNRD1Q16881 649 aa12.52□□□□□ -0.41
CLIP1-210ENST00000538120 MFSD6Q6ZSS7 791 aa12.52□□□□□ -0.41
CLIP1-210ENST00000538120 PGBD1Q96JS3 809 aa12.52□□□□□ -0.41
CLIP1-210ENST00000538120 CNNM2Q9H8M5 875 aa12.52□□□□□ -0.41
CLIP1-210ENST00000538120 ANAPC4Q9UJX5 808 aa12.52□□□□□ -0.41
CLIP1-210ENST00000538120 LIG1P18858 919 aa12.51□□□□□ -0.41
CLIP1-210ENST00000538120 RXRAP19793 462 aa12.51□□□□□ -0.41
CLIP1-210ENST00000538120 LIFRP42702 1097 aa12.51□□□□□ -0.41
CLIP1-210ENST00000538120 CHAF1AQ13111 956 aaPredicted RBP12.51□□□□□ -0.41
CLIP1-210ENST00000538120 TMEM67Q5HYA8 995 aa12.51□□□□□ -0.41
CLIP1-210ENST00000538120 OTUD7BQ6GQQ9 843 aa12.51□□□□□ -0.41
CLIP1-210ENST00000538120 MAP7D2Q96T17 732 aa12.51□□□□□ -0.41
CLIP1-210ENST00000538120 KRT23Q9C075 422 aa12.51□□□□□ -0.41
CLIP1-210ENST00000538120 ORC3Q9UBD5 711 aaPredicted RBP12.51□□□□□ -0.41
CLIP1-210ENST00000538120 LEMD3Q9Y2U8 911 aa12.51□□□□□ -0.41
CLIP1-210ENST00000538120 AP5Z1O43299 807 aa12.51□□□□□ -0.41
CLIP1-210ENST00000538120 PRDX5P30044 214 aa12.51□□□□□ -0.41
CLIP1-210ENST00000538120 NOLC1Q14978 699 aaKnown RBP eCLIP12.51□□□□□ -0.41
CLIP1-210ENST00000538120 GIMAP6Q6P9H5 292 aa12.51□□□□□ -0.41
CLIP1-210ENST00000538120 POLRMTO00411 1230 aaKnown RBP12.5□□□□□ -0.41
CLIP1-210ENST00000538120 IFIT3O14879 490 aaKnown RBP12.5□□□□□ -0.41
CLIP1-210ENST00000538120 CLSTN1O94985 981 aa12.5□□□□□ -0.41
CLIP1-210ENST00000538120 METAP2P50579 478 aaKnown RBP eCLIP12.5□□□□□ -0.41
CLIP1-210ENST00000538120 GPSM2P81274 684 aa12.5□□□□□ -0.41
CLIP1-210ENST00000538120 NTRK3Q16288 839 aa12.5□□□□□ -0.41
CLIP1-210ENST00000538120 STK11IPQ8N1F8 1099 aa12.5□□□□□ -0.41
CLIP1-210ENST00000538120 PIBF1Q8WXW3 757 aa12.5□□□□□ -0.41
CLIP1-210ENST00000538120 PSMD1Q99460 953 aa12.5□□□□□ -0.41
CLIP1-210ENST00000538120 BRIP1Q9BX63 1249 aa12.5□□□□□ -0.41
CLIP1-210ENST00000538120 FTOQ9C0B1 505 aaKnown RBP eCLIP12.5□□□□□ -0.41
CLIP1-210ENST00000538120 GJB4Q9NTQ9 266 aa12.5□□□□□ -0.41
CLIP1-210ENST00000538120 ANKIB1Q9P2G1 1089 aa12.5□□□□□ -0.41
CLIP1-210ENST00000538120 JAG2Q9Y219 1238 aa12.5□□□□□ -0.41
CLIP1-210ENST00000538120 RRP12Q5JTH9 1297 aaKnown RBP12.5□□□□□ -0.41
CLIP1-210ENST00000538120 C15orf52Q6ZUT6 534 aaKnown RBP12.5□□□□□ -0.41
CLIP1-210ENST00000538120 MYRIPQ8NFW9 859 aa12.5□□□□□ -0.41
CLIP1-210ENST00000538120 GPR101Q96P66 508 aaPredicted RBP12.5□□□□□ -0.41
CLIP1-210ENST00000538120 MYL10Q9BUA6 226 aa12.5□□□□□ -0.41
CLIP1-210ENST00000538120 RCOR1Q9UKL0 485 aa12.5□□□□□ -0.41
CLIP1-210ENST00000538120 XDHP47989 1333 aa12.5□□□□□ -0.41
CLIP1-210ENST00000538120 CYP2D7A0A087X1C5 515 aa12.49□□□□□ -0.41
CLIP1-210ENST00000538120 MINDY4BA8MYZ0 360 aa12.49□□□□□ -0.41
CLIP1-210ENST00000538120 CPLX1O14810 134 aa12.49□□□□□ -0.41
CLIP1-210ENST00000538120 ZBTB43O43298 467 aa12.49□□□□□ -0.41
CLIP1-210ENST00000538120 LETM1O95202 739 aaPredicted RBP12.49□□□□□ -0.41
CLIP1-210ENST00000538120 ST5P78524 1137 aa12.49□□□□□ -0.41
CLIP1-210ENST00000538120 FBXO18Q8NFZ0 1043 aa12.49□□□□□ -0.41
CLIP1-210ENST00000538120 TDRD7Q8NHU6 1098 aaKnown RBP12.49□□□□□ -0.41
CLIP1-210ENST00000538120 RPGRQ92834 1020 aaKnown RBP12.49□□□□□ -0.41
CLIP1-210ENST00000538120 ZKSCAN3Q9BRR0 538 aa12.49□□□□□ -0.41
CLIP1-210ENST00000538120 FUCA2Q9BTY2 467 aa12.49□□□□□ -0.41
CLIP1-210ENST00000538120 PRDM4Q9UKN5 801 aa12.49□□□□□ -0.41
CLIP1-210ENST00000538120 KLRG2A4D1S0 409 aaPredicted RBP12.49□□□□□ -0.41
CLIP1-210ENST00000538120 ZNF827Q17R98 1081 aa12.49□□□□□ -0.41
CLIP1-210ENST00000538120 UVSSAQ2YD98 709 aa12.49□□□□□ -0.41
CLIP1-210ENST00000538120 CTR9Q6PD62 1173 aa12.49□□□□□ -0.41
CLIP1-210ENST00000538120 MICU3Q86XE3 530 aa12.49□□□□□ -0.41
CLIP1-210ENST00000538120 CCDC144CPQ8IYA2 1237 aa12.49□□□□□ -0.41
CLIP1-210ENST00000538120 ZNF710Q8N1W2 664 aa12.49□□□□□ -0.41
CLIP1-210ENST00000538120 C8orf76Q96K31 380 aa12.49□□□□□ -0.41
CLIP1-210ENST00000538120 USP28Q96RU2 1077 aa12.49□□□□□ -0.41
CLIP1-210ENST00000538120 RNF41Q9H4P4 317 aaPredicted RBP12.49□□□□□ -0.41
CLIP1-210ENST00000538120 CFAP45Q9UL16 551 aa12.49□□□□□ -0.41
CLIP1-210ENST00000538120 RANBP6O60518 1105 aaKnown RBP12.48□□□□□ -0.41
CLIP1-210ENST00000538120 FGRP09769 529 aa12.48□□□□□ -0.41
CLIP1-210ENST00000538120 HOXA10P31260 410 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-210ENST00000538120 RBM6P78332 1123 aaKnown RBP12.48□□□□□ -0.41
CLIP1-210ENST00000538120 NFXL1Q6ZNB6 911 aa12.48□□□□□ -0.41
CLIP1-210ENST00000538120 RBM17Q96I25 401 aaKnown RBP12.48□□□□□ -0.41
CLIP1-210ENST00000538120 AIFM3Q96NN9 605 aa12.48□□□□□ -0.41
CLIP1-210ENST00000538120 MTA3Q9BTC8 594 aa12.48□□□□□ -0.41
CLIP1-210ENST00000538120 PRDM10Q9NQV6 1147 aa12.48□□□□□ -0.41
CLIP1-210ENST00000538120 NID2Q14112 1375 aa12.48□□□□□ -0.41
CLIP1-210ENST00000538120 GOLGA8AA7E2F4 631 aa12.48□□□□□ -0.41
CLIP1-210ENST00000538120 CEBPZQ03701 1054 aaKnown RBP12.48□□□□□ -0.41
CLIP1-210ENST00000538120 GRIK5Q16478 980 aa12.48□□□□□ -0.41
CLIP1-210ENST00000538120 PHKBQ93100 1093 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms