RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 CFAP100Q494V2 611 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 ZC3H12AQ5D1E8 599 aaKnown RBP12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 VPS37DQ86XT2 251 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 PDILTQ8N807 584 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 CNBD1Q8NA66 436 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 DBF4Q9UBU7 674 aaPredicted RBP12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 VWA3AA6NCI4 1184 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 GNAI2P04899 355 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 IGSF22Q8N9C0 903 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 KLHL23Q8NBE8 558 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 TATDN2Q93075 761 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 KIF9Q9HAQ2 790 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 HYPKQ9NX55 129 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 TBC1D2BQ9UPU7 963 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 NIP7Q9Y221 180 aaKnown RBP eCLIP12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 GNGT1P63211 74 aa12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 PLCB4Q15147 1175 aa12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 CCDC40Q4G0X9 1142 aa12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 SCLT1Q96NL6 688 aa12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 MTFR1LQ9H019 292 aa12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 ASAP1Q9ULH1 1129 aa12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 GRIN3BO60391 1043 aa12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 FILIP1LQ4L180 1135 aa12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 TSHZ3Q63HK5 1081 aa12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 WDR24Q96S15 920 aa12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 MEFVO15553 781 aaPredicted RBP12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 IFIT2P09913 472 aaKnown RBP12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 PSMA5P28066 241 aa12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 FANCCQ00597 558 aa12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 HSP90AB4PQ58FF6 505 aa12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 CLIC6Q96NY7 704 aa12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 RUFY1Q96T51 708 aa12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 ANKZF1Q9H8Y5 726 aa12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 HOMER3Q9NSC5 361 aa12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 TRMT112Q9UI30 125 aaKnown RBP12.3□□□□□ -0.44
CLSTN3-207ENST00000537408 ATRNO75882 1429 aa12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 AARSP49588 968 aaKnown RBP eCLIP12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 IRAK1P51617 712 aa12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 SMTNP53814 917 aa12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 UBASH3AP57075 661 aa12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 MICAL1Q8TDZ2 1067 aa12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 PIGBQ92521 554 aa12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 SPDL1Q96EA4 605 aa12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 ZNF396Q96N95 335 aaPredicted RBP12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 NLRP3Q96P20 1036 aa12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 ZBTB3Q9H5J0 574 aa12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 ATP6V0A4Q9HBG4 840 aa12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 GIGYF1O75420 1035 aaPredicted RBP12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 SURF6O75683 361 aaKnown RBP12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 AP1G2O75843 785 aa12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 FAM160A1Q05DH4 1040 aa12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 NECAB1Q8N987 351 aa12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 TCP11Q8WWU5 503 aa12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 CCDC114Q96M63 670 aa12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 CDHR2Q9BYE9 1310 aa12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 AKAP17AQ02040 695 aaKnown RBP12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 ACTN3Q08043 901 aaPredicted RBP12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 DDX46Q7L014 1031 aaKnown RBP12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 PGBD1Q96JS3 809 aa12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 KAT14Q9H8E8 782 aa12.29□□□□□ -0.44
CLSTN3-207ENST00000537408 CTAGE9A4FU28 777 aa12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 EIF3HO15372 352 aaKnown RBP eCLIP12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 CYP27B1O15528 508 aa12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 SHOX2O60902 331 aaPredicted RBP12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 LARGE1O95461 756 aa12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 PECAM1P16284 738 aaPredicted RBP12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 RPS6KA3P51812 740 aa12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 RBM5P52756 815 aaKnown RBP eCLIP12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 CCDC70Q6NSX1 233 aa12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 BPIFA3Q9BQP9 254 aa12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 COL5A2P05997 1499 aaPredicted RBP12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 CCDC175P0C221 793 aa12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 IFFO1Q0D2I5 559 aa12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 CNTROBQ8N137 903 aa12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 FSIP1Q8NA03 581 aa12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 JDP2Q8WYK2 163 aa12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 PNKPQ96T60 521 aa12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 WHAMMP3Q1A5X7 153 aa12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 SAMM50Q9Y512 469 aa12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 FMN2Q9NZ56 1722 aa12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 AOX1Q06278 1338 aa12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 CEBPZQ03701 1054 aaKnown RBP12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 KARSQ15046 597 aaKnown RBP12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 NUP133Q8WUM0 1156 aa12.28□□□□□ -0.44
CLSTN3-207ENST00000537408 PDE6BP35913 854 aa12.27□□□□□ -0.44
CLSTN3-207ENST00000537408 KCNQ4P56696 695 aa12.27□□□□□ -0.44
CLSTN3-207ENST00000537408 VSNL1P62760 191 aa12.27□□□□□ -0.44
CLSTN3-207ENST00000537408 SUGCTQ9HAC7 445 aa12.27□□□□□ -0.44
CLSTN3-207ENST00000537408 CHCHD3Q9NX63 227 aaKnown RBP12.27□□□□□ -0.44
CLSTN3-207ENST00000537408 KNDC1Q76NI1 1749 aa12.27□□□□□ -0.44
CLSTN3-207ENST00000537408 NRXN3Q9Y4C0 1643 aa12.27□□□□□ -0.44
CLSTN3-207ENST00000537408 F6X3S4 739 aa12.27□□□□□ -0.45
CLSTN3-207ENST00000537408 OPA1O60313 960 aa12.27□□□□□ -0.45
CLSTN3-207ENST00000537408 THOC1Q96FV9 657 aaKnown RBP12.27□□□□□ -0.45
CLSTN3-207ENST00000537408 ARHGAP27Q6ZUM4 889 aa12.27□□□□□ -0.45
CLSTN3-207ENST00000537408 PARP9Q8IXQ6 854 aa12.27□□□□□ -0.45
CLSTN3-207ENST00000537408 TSPYL6Q8N831 410 aa12.27□□□□□ -0.45
CLSTN3-207ENST00000537408 ZBTB10Q96DT7 871 aa12.27□□□□□ -0.45
CLSTN3-207ENST00000537408 TM6SF1Q9BZW5 370 aa12.27□□□□□ -0.45
CLSTN3-207ENST00000537408 ACTR5Q9H9F9 607 aaPredicted RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms