RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 FAM83AQ86UY5 434 aa8.29□□□□□ -1.08
CD44-237ENST00000534082 SNX27Q96L92 541 aa8.29□□□□□ -1.08
CD44-237ENST00000534082 UHRF1Q96T88 793 aaPredicted RBP8.29□□□□□ -1.08
CD44-237ENST00000534082 TMOD2Q9NZR1 351 aa8.29□□□□□ -1.08
CD44-237ENST00000534082 HCN4Q9Y3Q4 1203 aa8.29□□□□□ -1.08
CD44-237ENST00000534082 ARIH1Q9Y4X5 557 aaPredicted RBP8.29□□□□□ -1.08
CD44-237ENST00000534082 XIRP2A4UGR9 3374 aa8.29□□□□□ -1.08
CD44-237ENST00000534082 LTBP2Q14767 1821 aa8.29□□□□□ -1.08
CD44-237ENST00000534082 A0A0G2JLL6 359 aaPredicted RBP8.28□□□□□ -1.08
CD44-237ENST00000534082 CXCL11O14625 94 aa8.28□□□□□ -1.08
CD44-237ENST00000534082 DDX58O95786 925 aaKnown RBP8.28□□□□□ -1.08
CD44-237ENST00000534082 IGKV5-2P06315 115 aa8.28□□□□□ -1.08
CD44-237ENST00000534082 TMPOP42166 694 aaKnown RBP8.28□□□□□ -1.08
CD44-237ENST00000534082 SHHQ15465 462 aa8.28□□□□□ -1.08
CD44-237ENST00000534082 NOL9Q5SY16 702 aaKnown RBP8.28□□□□□ -1.08
CD44-237ENST00000534082 C9orf50Q5SZB4 431 aa8.28□□□□□ -1.08
CD44-237ENST00000534082 GADL1Q6ZQY3 521 aa8.28□□□□□ -1.08
CD44-237ENST00000534082 FASTKD5Q7L8L6 764 aaKnown RBP8.28□□□□□ -1.08
CD44-237ENST00000534082 UBE3BQ7Z3V4 1068 aa8.28□□□□□ -1.08
CD44-237ENST00000534082 PRRT2Q7Z6L0 340 aaPredicted RBP8.28□□□□□ -1.08
CD44-237ENST00000534082 ANKRD13CQ8N6S4 541 aa8.28□□□□□ -1.08
CD44-237ENST00000534082 C1QTNF1Q9BXJ1 281 aa8.28□□□□□ -1.08
CD44-237ENST00000534082 ZNF112Q9UJU3 913 aa8.28□□□□□ -1.08
CD44-237ENST00000534082 MAP3K2Q9Y2U5 619 aa8.28□□□□□ -1.08
CD44-237ENST00000534082 SLC45A1Q9Y2W3 748 aa8.28□□□□□ -1.08
CD44-237ENST00000534082 CLSPNQ9HAW4 1339 aa8.28□□□□□ -1.08
CD44-237ENST00000534082 PTPREP23469 700 aa8.27□□□□□ -1.09
CD44-237ENST00000534082 GRIK5Q16478 980 aa8.27□□□□□ -1.09
CD44-237ENST00000534082 FAM110CQ1W6H9 321 aa8.27□□□□□ -1.09
CD44-237ENST00000534082 MAP3K21Q5TCX8 1036 aa8.27□□□□□ -1.09
CD44-237ENST00000534082 FKBP1CQ5VVH2 108 aa8.27□□□□□ -1.09
CD44-237ENST00000534082 ATXN2LQ8WWM7 1075 aaKnown RBP8.27□□□□□ -1.09
CD44-237ENST00000534082 TRIB2Q92519 343 aa8.27□□□□□ -1.09
CD44-237ENST00000534082 TEKT1Q969V4 418 aa8.27□□□□□ -1.09
CD44-237ENST00000534082 ASB2Q96Q27 587 aa8.27□□□□□ -1.09
CD44-237ENST00000534082 THEGQ9P2T0 379 aa8.27□□□□□ -1.09
CD44-237ENST00000534082 PRKAG2Q9UGJ0 569 aa8.27□□□□□ -1.09
CD44-237ENST00000534082 ANKRD18BA2A2Z9 1011 aa8.26□□□□□ -1.09
CD44-237ENST00000534082 NEURL1BA8MQ27 555 aa8.26□□□□□ -1.09
CD44-237ENST00000534082 TK2O00142 265 aa8.26□□□□□ -1.09
CD44-237ENST00000534082 DPYSL4O14531 572 aa8.26□□□□□ -1.09
CD44-237ENST00000534082 CWF19L2Q2TBE0 894 aaKnown RBP8.26□□□□□ -1.09
CD44-237ENST00000534082 TDRD7Q8NHU6 1098 aaKnown RBP8.26□□□□□ -1.09
CD44-237ENST00000534082 ZDHHC16Q969W1 377 aa8.26□□□□□ -1.09
CD44-237ENST00000534082 ZDHHC15Q96MV8 337 aa8.26□□□□□ -1.09
CD44-237ENST00000534082 PLA2G12BQ9BX93 195 aa8.26□□□□□ -1.09
CD44-237ENST00000534082 H7C1W4 665 aa8.25□□□□□ -1.09
CD44-237ENST00000534082 CSF1RP07333 972 aa8.25□□□□□ -1.09
CD44-237ENST00000534082 HDLBPQ00341 1268 aaKnown RBP8.25□□□□□ -1.09
CD44-237ENST00000534082 NEXNQ0ZGT2 675 aa8.25□□□□□ -1.09
CD44-237ENST00000534082 GRIN2CQ14957 1233 aa8.25□□□□□ -1.09
CD44-237ENST00000534082 IL27Q8NEV9 243 aa8.25□□□□□ -1.09
CD44-237ENST00000534082 ADAM33Q9BZ11 813 aa8.25□□□□□ -1.09
CD44-237ENST00000534082 GJD2Q9UKL4 321 aa8.25□□□□□ -1.09
CD44-237ENST00000534082 ZHX2Q9Y6X8 837 aa8.25□□□□□ -1.09
CD44-237ENST00000534082 DOCK3Q8IZD9 2030 aa8.25□□□□□ -1.09
CD44-237ENST00000534082 CACNA1AO00555 2505 aa8.25□□□□□ -1.09
CD44-237ENST00000534082 MUC6Q6W4X9 2439 aa8.24□□□□□ -1.09
CD44-237ENST00000534082 PI4KAP2A4QPH2 592 aa8.24□□□□□ -1.09
CD44-237ENST00000534082 PLIN1O60240 522 aa8.24□□□□□ -1.09
CD44-237ENST00000534082 HIBADHP31937 336 aaKnown RBP8.24□□□□□ -1.09
CD44-237ENST00000534082 GYG1P46976 350 aa8.24□□□□□ -1.09
CD44-237ENST00000534082 MRPS5P82675 430 aaKnown RBP8.24□□□□□ -1.09
CD44-237ENST00000534082 CHAF1AQ13111 956 aaPredicted RBP8.24□□□□□ -1.09
CD44-237ENST00000534082 NEUROD2Q15784 382 aa8.24□□□□□ -1.09
CD44-237ENST00000534082 APOBEC3HQ6NTF7 200 aaKnown RBP8.24□□□□□ -1.09
CD44-237ENST00000534082 KSR2Q6VAB6 950 aa8.24□□□□□ -1.09
CD44-237ENST00000534082 SCYL3Q8IZE3 742 aa8.24□□□□□ -1.09
CD44-237ENST00000534082 PI4KAP1Q8N8J0 262 aa8.24□□□□□ -1.09
CD44-237ENST00000534082 FAM151AQ8WW52 585 aa8.24□□□□□ -1.09
CD44-237ENST00000534082 PPM1EQ8WY54 764 aa8.24□□□□□ -1.09
CD44-237ENST00000534082 SENP6Q9GZR1 1112 aaPredicted RBP8.24□□□□□ -1.09
CD44-237ENST00000534082 PICK1Q9NRD5 415 aa8.24□□□□□ -1.09
CD44-237ENST00000534082 PNMA3Q9UL41 463 aa8.24□□□□□ -1.09
CD44-237ENST00000534082 AGTPBP1Q9UPW5 1226 aa8.24□□□□□ -1.09
CD44-237ENST00000534082 PTPRFP10586 1907 aa8.23□□□□□ -1.09
CD44-237ENST00000534082 TRIM75PA6NK02 468 aa8.23□□□□□ -1.09
CD44-237ENST00000534082 ZKSCAN1P17029 563 aaPredicted RBP8.23□□□□□ -1.09
CD44-237ENST00000534082 PTPRAP18433 802 aa8.23□□□□□ -1.09
CD44-237ENST00000534082 CYP2B6P20813 491 aa8.23□□□□□ -1.09
CD44-237ENST00000534082 CCND3P30281 292 aaPredicted RBP8.23□□□□□ -1.09
CD44-237ENST00000534082 CASP7P55210 303 aa8.23□□□□□ -1.09
CD44-237ENST00000534082 RTP1P59025 263 aa8.23□□□□□ -1.09
CD44-237ENST00000534082 CACNB2Q08289 660 aaPredicted RBP8.23□□□□□ -1.09
CD44-237ENST00000534082 TCP10Q12799 353 aa8.23□□□□□ -1.09
CD44-237ENST00000534082 IFIT5Q13325 482 aaKnown RBP8.23□□□□□ -1.09
CD44-237ENST00000534082 CAMK2BQ13554 666 aa8.23□□□□□ -1.09
CD44-237ENST00000534082 TREML2Q5T2D2 321 aa8.23□□□□□ -1.09
CD44-237ENST00000534082 ALYREFQ86V81 257 aaKnown RBP8.23□□□□□ -1.09
CD44-237ENST00000534082 FAM84BQ96KN1 310 aaPredicted RBP8.23□□□□□ -1.09
CD44-237ENST00000534082 NECAB3Q96P71 396 aaPredicted RBP8.23□□□□□ -1.09
CD44-237ENST00000534082 LRFN3Q9BTN0 628 aa8.23□□□□□ -1.09
CD44-237ENST00000534082 PRDM5Q9NQX1 630 aaPredicted RBP8.23□□□□□ -1.09
CD44-237ENST00000534082 MBIPQ9NS73 344 aa8.23□□□□□ -1.09
CD44-237ENST00000534082 AFG3L2Q9Y4W6 797 aa8.23□□□□□ -1.09
CD44-237ENST00000534082 PLXNB2O15031 1838 aa8.23□□□□□ -1.09
CD44-237ENST00000534082 ATRNL1Q5VV63 1379 aa8.22□□□□□ -1.09
CD44-237ENST00000534082 FRMPD3Q5JV73 1810 aa8.22□□□□□ -1.09
CD44-237ENST00000534082 ELL2O00472 640 aaPredicted RBP8.22□□□□□ -1.09
CD44-237ENST00000534082 HRO43593 1189 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms