RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 FARP2O94887 1054 aaPredicted RBP19.41■□□□□ 0.7
CHMP4A-207ENST00000533523 ELNP15502 786 aa19.41■□□□□ 0.7
CHMP4A-207ENST00000533523 MECOMQ03112 1051 aa19.41■□□□□ 0.7
CHMP4A-207ENST00000533523 U2AF1L4Q8WU68 220 aaKnown RBP19.41■□□□□ 0.7
CHMP4A-207ENST00000533523 TAOK2Q9UL54 1235 aa19.41■□□□□ 0.7
CHMP4A-207ENST00000533523 AKAP2Q9Y2D5 859 aa19.41■□□□□ 0.7
CHMP4A-207ENST00000533523 SLC45A1Q9Y2W3 748 aa19.41■□□□□ 0.7
CHMP4A-207ENST00000533523 PLXNB2O15031 1838 aa19.41■□□□□ 0.7
CHMP4A-207ENST00000533523 FAM196BA6NMK8 535 aa19.4■□□□□ 0.7
CHMP4A-207ENST00000533523 ZBTB22O15209 634 aa19.4■□□□□ 0.7
CHMP4A-207ENST00000533523 INHAP05111 366 aa19.4■□□□□ 0.7
CHMP4A-207ENST00000533523 FLT3LGP49771 235 aa19.4■□□□□ 0.7
CHMP4A-207ENST00000533523 STAP2Q9UGK3 403 aa19.4■□□□□ 0.7
CHMP4A-207ENST00000533523 DDX60LQ5H9U9 1706 aaKnown RBP19.39■□□□□ 0.7
CHMP4A-207ENST00000533523 GNAI3P08754 354 aa19.39■□□□□ 0.69
CHMP4A-207ENST00000533523 GORABQ5T7V8 394 aa19.39■□□□□ 0.69
CHMP4A-207ENST00000533523 PI16Q6UXB8 463 aa19.39■□□□□ 0.69
CHMP4A-207ENST00000533523 Q7L0L9 218 aa19.39■□□□□ 0.69
CHMP4A-207ENST00000533523 FAM163AQ96GL9 167 aaPredicted RBP19.39■□□□□ 0.69
CHMP4A-207ENST00000533523 NEUROD6Q96NK8 337 aa19.39■□□□□ 0.69
CHMP4A-207ENST00000533523 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.39■□□□□ 0.69
CHMP4A-207ENST00000533523 AGTPBP1Q9UPW5 1226 aa19.39■□□□□ 0.69
CHMP4A-207ENST00000533523 COL2A1P02458 1487 aaPredicted RBP19.38■□□□□ 0.69
CHMP4A-207ENST00000533523 RHBDL3P58872 404 aa19.38■□□□□ 0.69
CHMP4A-207ENST00000533523 MAP3K10Q02779 954 aa19.38■□□□□ 0.69
CHMP4A-207ENST00000533523 TREML2Q5T2D2 321 aa19.38■□□□□ 0.69
CHMP4A-207ENST00000533523 ANKRD13CQ8N6S4 541 aa19.38■□□□□ 0.69
CHMP4A-207ENST00000533523 DIS3LQ8TF46 1054 aaKnown RBP19.38■□□□□ 0.69
CHMP4A-207ENST00000533523 ZNF384Q8TF68 577 aa19.38■□□□□ 0.69
CHMP4A-207ENST00000533523 PNMA3Q9UL41 463 aa19.38■□□□□ 0.69
CHMP4A-207ENST00000533523 GPR75-ASB3A0A0A6YYF3 556 aa19.37■□□□□ 0.69
CHMP4A-207ENST00000533523 GSTO1P78417 241 aa19.37■□□□□ 0.69
CHMP4A-207ENST00000533523 HMG20BQ9P0W2 317 aa19.37■□□□□ 0.69
CHMP4A-207ENST00000533523 ATF7IPQ6VMQ6 1270 aa19.36■□□□□ 0.69
CHMP4A-207ENST00000533523 SPATA5Q8NB90 893 aa19.36■□□□□ 0.69
CHMP4A-207ENST00000533523 COA7Q96BR5 231 aa19.36■□□□□ 0.69
CHMP4A-207ENST00000533523 GDF15Q99988 308 aa19.36■□□□□ 0.69
CHMP4A-207ENST00000533523 RAI14Q9P0K7 980 aa19.36■□□□□ 0.69
CHMP4A-207ENST00000533523 NR2E3Q9Y5X4 410 aa19.36■□□□□ 0.69
CHMP4A-207ENST00000533523 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.36■□□□□ 0.69
CHMP4A-207ENST00000533523 A0A1W2PPC1 479 aa19.35■□□□□ 0.69
CHMP4A-207ENST00000533523 TBC1D12O60347 775 aa19.35■□□□□ 0.69
CHMP4A-207ENST00000533523 SGPL1O95470 568 aa19.35■□□□□ 0.69
CHMP4A-207ENST00000533523 MNX1P50219 401 aaPredicted RBP19.35■□□□□ 0.69
CHMP4A-207ENST00000533523 MTX1Q13505 466 aa19.35■□□□□ 0.69
CHMP4A-207ENST00000533523 IRF5Q13568 498 aa19.35■□□□□ 0.69
CHMP4A-207ENST00000533523 FAM110CQ1W6H9 321 aa19.35■□□□□ 0.69
CHMP4A-207ENST00000533523 TBC1D9Q6ZT07 1266 aa19.35■□□□□ 0.69
CHMP4A-207ENST00000533523 TEX11Q8IYF3 940 aa19.35■□□□□ 0.69
CHMP4A-207ENST00000533523 PROCA1Q8NCQ7 364 aaPredicted RBP19.35■□□□□ 0.69
CHMP4A-207ENST00000533523 PXYLP1Q8TE99 480 aa19.35■□□□□ 0.69
CHMP4A-207ENST00000533523 FRAT1Q92837 279 aaPredicted RBP19.35■□□□□ 0.69
CHMP4A-207ENST00000533523 NSUN4Q96CB9 384 aaKnown RBP19.35■□□□□ 0.69
CHMP4A-207ENST00000533523 DEFB118Q96PH6 123 aa19.35■□□□□ 0.69
CHMP4A-207ENST00000533523 OSBPL5Q9H0X9 879 aaPredicted RBP19.35■□□□□ 0.69
CHMP4A-207ENST00000533523 MYH1P12882 1939 aa19.34■□□□□ 0.69
CHMP4A-207ENST00000533523 BCAR3O75815 825 aa19.34■□□□□ 0.69
CHMP4A-207ENST00000533523 TFRCP02786 760 aaKnown RBP19.34■□□□□ 0.69
CHMP4A-207ENST00000533523 LDHCP07864 332 aa19.34■□□□□ 0.69
CHMP4A-207ENST00000533523 ARID4AP29374 1257 aaPredicted RBP19.34■□□□□ 0.69
CHMP4A-207ENST00000533523 HMGCS2P54868 508 aa19.34■□□□□ 0.69
CHMP4A-207ENST00000533523 ZKSCAN2Q63HK3 967 aa19.34■□□□□ 0.69
CHMP4A-207ENST00000533523 NPM3O75607 178 aaKnown RBP19.33■□□□□ 0.68
CHMP4A-207ENST00000533523 TRIM27P14373 513 aa19.33■□□□□ 0.68
CHMP4A-207ENST00000533523 SPP2Q13103 211 aa19.33■□□□□ 0.68
CHMP4A-207ENST00000533523 ZNF280CQ8ND82 737 aa19.33■□□□□ 0.68
CHMP4A-207ENST00000533523 NOL10Q9BSC4 688 aaKnown RBP19.33■□□□□ 0.68
CHMP4A-207ENST00000533523 CRISPLD2Q9H0B8 497 aa19.33■□□□□ 0.68
CHMP4A-207ENST00000533523 EVI5O60447 810 aa19.32■□□□□ 0.68
CHMP4A-207ENST00000533523 MAP4K4O95819 1239 aaPredicted RBP19.32■□□□□ 0.68
CHMP4A-207ENST00000533523 MCAMP43121 646 aa19.32■□□□□ 0.68
CHMP4A-207ENST00000533523 PAK6Q9NQU5 681 aaPredicted RBP19.32■□□□□ 0.68
CHMP4A-207ENST00000533523 LRP2BPQ9P2M1 347 aa19.32■□□□□ 0.68
CHMP4A-207ENST00000533523 RCAN3Q9UKA8 241 aa19.32■□□□□ 0.68
CHMP4A-207ENST00000533523 GNAI2P04899 355 aa19.31■□□□□ 0.68
CHMP4A-207ENST00000533523 CAP2P40123 477 aa19.31■□□□□ 0.68
CHMP4A-207ENST00000533523 G3BP1Q13283 466 aaKnown RBP eCLIP19.31■□□□□ 0.68
CHMP4A-207ENST00000533523 PABPC4Q13310 644 aaKnown RBP eCLIP19.31■□□□□ 0.682e-6■■■□□ 18.3
CHMP4A-207ENST00000533523 SH3RF3Q8TEJ3 882 aaPredicted RBP19.31■□□□□ 0.68
CHMP4A-207ENST00000533523 COL25A1Q9BXS0 654 aaPredicted RBP19.31■□□□□ 0.68
CHMP4A-207ENST00000533523 TBC1D2Q9BYX2 928 aa19.31■□□□□ 0.68
CHMP4A-207ENST00000533523 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.31■□□□□ 0.68
CHMP4A-207ENST00000533523 TNNQ9UQP3 1299 aa19.31■□□□□ 0.68
CHMP4A-207ENST00000533523 PNMA6EA0A0J9YXQ4 647 aa19.3■□□□□ 0.68
CHMP4A-207ENST00000533523 USP17L5A8MUK1 530 aa19.3■□□□□ 0.68
CHMP4A-207ENST00000533523 HMGCRP04035 888 aa19.3■□□□□ 0.68
CHMP4A-207ENST00000533523 UQCRFS1P1P0C7P4 283 aa19.3■□□□□ 0.68
CHMP4A-207ENST00000533523 GCLCP48506 637 aaPredicted RBP19.3■□□□□ 0.68
CHMP4A-207ENST00000533523 RRP1BQ14684 758 aaKnown RBP19.3■□□□□ 0.68
CHMP4A-207ENST00000533523 PAWRQ96IZ0 340 aaKnown RBP19.3■□□□□ 0.68
CHMP4A-207ENST00000533523 ASCC2Q9H1I8 757 aaPredicted RBP19.3■□□□□ 0.68
CHMP4A-207ENST00000533523 HERC5Q9UII4 1024 aaKnown RBP19.3■□□□□ 0.68
CHMP4A-207ENST00000533523 IRX3P78415 501 aaPredicted RBP19.29■□□□□ 0.68
CHMP4A-207ENST00000533523 MTMR2Q13614 643 aa19.29■□□□□ 0.68
CHMP4A-207ENST00000533523 DEFB123Q8N688 67 aa19.29■□□□□ 0.68
CHMP4A-207ENST00000533523 AS3MTQ9HBK9 375 aa19.29■□□□□ 0.68
CHMP4A-207ENST00000533523 SNRKQ9NRH2 765 aa19.29■□□□□ 0.68
CHMP4A-207ENST00000533523 AATFQ9NY61 560 aaKnown RBP eCLIP19.29■□□□□ 0.68
CHMP4A-207ENST00000533523 ZMYND8Q9ULU4 1186 aaPredicted RBP19.29■□□□□ 0.68
CHMP4A-207ENST00000533523 FRMPD3Q5JV73 1810 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms