RNA–Protein interactions for RNA: ENST00000532285.1

CAPN1-222, Transcript of calpain 1, human

TSL 4

Gene CAPN1, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-222	ENST00000532285	PTPRA	P18433	802 aa		27.83	■■■□□ 2.05
CAPN1-222	ENST00000532285	USP5	P45974	858 aa		27.83	■■■□□ 2.05
CAPN1-222	ENST00000532285	CRHR2	Q13324	411 aa		27.83	■■■□□ 2.05
CAPN1-222	ENST00000532285	RIOK1	Q9BRS2	568 aa	Known RBP	27.83	■■■□□ 2.05
CAPN1-222	ENST00000532285	TCRBV5S4A2T	A0A5A2	114 aa		27.82	■■■□□ 2.04
CAPN1-222	ENST00000532285	FAM196B	A6NMK8	535 aa		27.82	■■■□□ 2.04
CAPN1-222	ENST00000532285	FKTN	O75072	461 aa		27.82	■■■□□ 2.04
CAPN1-222	ENST00000532285	HDAC1	Q13547	482 aa	Predicted RBP	27.82	■■■□□ 2.04
CAPN1-222	ENST00000532285	FOXP4	Q8IVH2	680 aa	Predicted RBP	27.82	■■■□□ 2.04
CAPN1-222	ENST00000532285	ZCCHC17	Q9NP64	241 aa	Known RBP	27.82	■■■□□ 2.04
CAPN1-222	ENST00000532285	PALD1	Q9ULE6	856 aa		27.82	■■■□□ 2.04
CAPN1-222	ENST00000532285	CXCL11	O14625	94 aa		27.81	■■■□□ 2.04
CAPN1-222	ENST00000532285	FAM43A	Q8N2R8	423 aa		27.81	■■■□□ 2.04
CAPN1-222	ENST00000532285	MCOLN1	Q9GZU1	580 aa		27.81	■■■□□ 2.04
CAPN1-222	ENST00000532285	SAP30BP	Q9UHR5	308 aa	Known RBP	27.81	■■■□□ 2.04
CAPN1-222	ENST00000532285	ZHX2	Q9Y6X8	837 aa		27.81	■■■□□ 2.04
CAPN1-222	ENST00000532285	PTPRF	P10586	1907 aa		27.8	■■■□□ 2.04
CAPN1-222	ENST00000532285	HLA-DOA	P06340	250 aa		27.8	■■■□□ 2.04
CAPN1-222	ENST00000532285	ADD2	P35612	726 aa		27.8	■■■□□ 2.04
CAPN1-222	ENST00000532285	CTU1	Q7Z7A3	348 aa	Known RBP	27.8	■■■□□ 2.04
CAPN1-222	ENST00000532285	METTL16	Q86W50	562 aa	Known RBP	27.8	■■■□□ 2.04
CAPN1-222	ENST00000532285	GCC1	Q96CN9	775 aa		27.8	■■■□□ 2.04
CAPN1-222	ENST00000532285	ABHD8	Q96I13	439 aa		27.8	■■■□□ 2.04
CAPN1-222	ENST00000532285	NAV1	Q8NEY1	1877 aa		27.79	■■■□□ 2.04
CAPN1-222	ENST00000532285	BTBD19	C9JJ37	291 aa		27.79	■■■□□ 2.04
CAPN1-222	ENST00000532285	TAF1C	Q15572	869 aa	Predicted RBP	27.79	■■■□□ 2.04
CAPN1-222	ENST00000532285	ZSCAN25	Q6NSZ9	544 aa		27.79	■■■□□ 2.04
CAPN1-222	ENST00000532285	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	27.79	■■■□□ 2.04
CAPN1-222	ENST00000532285	TRIM34	Q9BYJ4	488 aa		27.79	■■■□□ 2.04
CAPN1-222	ENST00000532285	CRNKL1	Q9BZJ0	848 aa	Known RBP	27.79	■■■□□ 2.04
CAPN1-222	ENST00000532285	ZFYVE28	Q9HCC9	887 aa		27.79	■■■□□ 2.04
CAPN1-222	ENST00000532285	ZBTB47	Q9UFB7	747 aa	Predicted RBP	27.79	■■■□□ 2.04
CAPN1-222	ENST00000532285	AFG3L2	Q9Y4W6	797 aa		27.79	■■■□□ 2.04
CAPN1-222	ENST00000532285	SUPT16H	Q9Y5B9	1047 aa	Known RBP	27.79	■■■□□ 2.04
CAPN1-222	ENST00000532285	CAP2	P40123	477 aa		27.78	■■■□□ 2.04
CAPN1-222	ENST00000532285	TTC41P	Q6P2S7	1318 aa		27.77	■■■□□ 2.04
CAPN1-222	ENST00000532285	CAPN15	O75808	1086 aa		27.77	■■■□□ 2.04
CAPN1-222	ENST00000532285	DDX60L	Q5H9U9	1706 aa	Known RBP	27.76	■■■□□ 2.03
CAPN1-222	ENST00000532285	UBE3C	Q15386	1083 aa		27.76	■■■□□ 2.03
CAPN1-222	ENST00000532285	ANKRD45	Q5TZF3	282 aa		27.76	■■■□□ 2.03
CAPN1-222	ENST00000532285	TSHZ3	Q63HK5	1081 aa		27.76	■■■□□ 2.03
CAPN1-222	ENST00000532285	ANKRD23	Q86SG2	305 aa		27.76	■■■□□ 2.03
CAPN1-222	ENST00000532285	EXOC6	Q8TAG9	804 aa		27.76	■■■□□ 2.03
CAPN1-222	ENST00000532285	ERC2	O15083	957 aa		27.75	■■■□□ 2.03
CAPN1-222	ENST00000532285	TTC6	Q86TZ1	520 aa		27.75	■■■□□ 2.03
CAPN1-222	ENST00000532285	TBC1D2	Q9BYX2	928 aa		27.75	■■■□□ 2.03
CAPN1-222	ENST00000532285	DNAJC18	Q9H819	358 aa		27.75	■■■□□ 2.03
CAPN1-222	ENST00000532285		A0A0G2JLL6	359 aa	Predicted RBP	27.74	■■■□□ 2.03
CAPN1-222	ENST00000532285	MOGS	Q13724	837 aa		27.74	■■■□□ 2.03
CAPN1-222	ENST00000532285	RRP1B	Q14684	758 aa	Known RBP	27.74	■■■□□ 2.03
CAPN1-222	ENST00000532285	SLC4A8	Q2Y0W8	1093 aa		27.74	■■■□□ 2.03
CAPN1-222	ENST00000532285	FASTKD5	Q7L8L6	764 aa	Known RBP	27.74	■■■□□ 2.03
CAPN1-222	ENST00000532285	PRRT2	Q7Z6L0	340 aa	Predicted RBP	27.74	■■■□□ 2.03
CAPN1-222	ENST00000532285	LCORL	Q8N3X6	602 aa		27.74	■■■□□ 2.03
CAPN1-222	ENST00000532285	RWDD1	Q9H446	243 aa	Predicted RBP	27.74	■■■□□ 2.03
CAPN1-222	ENST00000532285	PKN2	Q16513	984 aa	Known RBP	27.73	■■■□□ 2.03
CAPN1-222	ENST00000532285	SLFNL1	Q499Z3	407 aa		27.73	■■■□□ 2.03
CAPN1-222	ENST00000532285	KBTBD3	Q8NAB2	608 aa		27.73	■■■□□ 2.03
CAPN1-222	ENST00000532285	EHD4	Q9H223	541 aa		27.73	■■■□□ 2.03
CAPN1-222	ENST00000532285	ARMT1	Q9H993	441 aa		27.73	■■■□□ 2.03
CAPN1-222	ENST00000532285	GINM1	Q9NU53	330 aa		27.73	■■■□□ 2.03
CAPN1-222	ENST00000532285	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	27.73	■■■□□ 2.03
CAPN1-222	ENST00000532285	TRIM75P	A6NK02	468 aa		27.72	■■■□□ 2.03
CAPN1-222	ENST00000532285	PDHX	O00330	501 aa		27.72	■■■□□ 2.03
CAPN1-222	ENST00000532285	MBD4	O95243	580 aa		27.72	■■■□□ 2.03
CAPN1-222	ENST00000532285	MX1	P20591	662 aa		27.72	■■■□□ 2.03
CAPN1-222	ENST00000532285	SP3	Q02447	781 aa		27.72	■■■□□ 2.03
CAPN1-222	ENST00000532285	ERO1A	Q96HE7	468 aa		27.72	■■■□□ 2.03
CAPN1-222	ENST00000532285	SERPINB13	Q9UIV8	391 aa		27.72	■■■□□ 2.03
CAPN1-222	ENST00000532285	BAZ2A	Q9UIF9	1905 aa	Known RBP	27.71	■■■□□ 2.03
CAPN1-222	ENST00000532285	USP17L5	A8MUK1	530 aa		27.71	■■■□□ 2.03
CAPN1-222	ENST00000532285	TLR2	O60603	784 aa		27.71	■■■□□ 2.03
CAPN1-222	ENST00000532285	GLRX3	O76003	335 aa	Known RBP	27.71	■■■□□ 2.03
CAPN1-222	ENST00000532285	POLR3D	P05423	398 aa	Predicted RBP	27.71	■■■□□ 2.03
CAPN1-222	ENST00000532285	ASNS	P08243	561 aa		27.71	■■■□□ 2.03
CAPN1-222	ENST00000532285	CCDC84	Q86UT8	332 aa	Predicted RBP	27.71	■■■□□ 2.03
CAPN1-222	ENST00000532285	PI4K2B	Q8TCG2	481 aa		27.71	■■■□□ 2.03
CAPN1-222	ENST00000532285	OTUD7A	Q8TE49	926 aa	Predicted RBP	27.71	■■■□□ 2.03
CAPN1-222	ENST00000532285	CHGB	P05060	677 aa		27.7	■■■□□ 2.02
CAPN1-222	ENST00000532285	GPAT2	Q6NUI2	795 aa		27.7	■■■□□ 2.02
CAPN1-222	ENST00000532285	ZNF280C	Q8ND82	737 aa		27.7	■■■□□ 2.02
CAPN1-222	ENST00000532285	SDR42E1	Q8WUS8	393 aa		27.7	■■■□□ 2.02
CAPN1-222	ENST00000532285	AS3MT	Q9HBK9	375 aa		27.7	■■■□□ 2.02
CAPN1-222	ENST00000532285	DCP1A	Q9NPI6	582 aa	Predicted RBP	27.7	■■■□□ 2.02
CAPN1-222	ENST00000532285	ATP8A2	Q9NTI2	1148 aa		27.7	■■■□□ 2.02
CAPN1-222	ENST00000532285	MCM9	Q9NXL9	1143 aa		27.7	■■■□□ 2.02
CAPN1-222	ENST00000532285	GADL1	Q6ZQY3	521 aa		27.69	■■■□□ 2.02
CAPN1-222	ENST00000532285	SALL3	Q9BXA9	1300 aa		27.68	■■■□□ 2.02
CAPN1-222	ENST00000532285	ZFY	P08048	801 aa	Predicted RBP	27.68	■■■□□ 2.02
CAPN1-222	ENST00000532285	PLCD1	P51178	756 aa		27.68	■■■□□ 2.02
CAPN1-222	ENST00000532285	SPP2	Q13103	211 aa		27.68	■■■□□ 2.02
CAPN1-222	ENST00000532285	LRRFIP1	Q32MZ4	808 aa	Known RBP	27.68	■■■□□ 2.02
CAPN1-222	ENST00000532285	TATDN1	Q6P1N9	297 aa		27.68	■■■□□ 2.02
CAPN1-222	ENST00000532285	MYH8	P13535	1937 aa		27.68	■■■□□ 2.02
CAPN1-222	ENST00000532285	LOC285556	D6RIA3	1793 aa		27.68	■■■□□ 2.02
CAPN1-222	ENST00000532285	RNF113A	O15541	343 aa	Known RBP	27.67	■■■□□ 2.02
CAPN1-222	ENST00000532285	SMC5	Q8IY18	1101 aa		27.67	■■■□□ 2.02
CAPN1-222	ENST00000532285	CD99L2	Q8TCZ2	262 aa		27.67	■■■□□ 2.02
CAPN1-222	ENST00000532285	WDR18	Q9BV38	432 aa		27.67	■■■□□ 2.02
CAPN1-222	ENST00000532285	PUS7L	Q9H0K6	701 aa	Known RBP	27.67	■■■□□ 2.02

Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms