RNA–Protein interactions for RNA: ENST00000529828.5

PTPRC-213, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 2,336 nt, Biotype non stop decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-213ENST00000529828 TTC28Q96AY4 2481 aa4.44□□□□□ -1.7
PTPRC-213ENST00000529828 RPAP1Q9BWH6 1393 aaPredicted RBP4.44□□□□□ -1.7
PTPRC-213ENST00000529828 MROH5Q6ZUA9 1318 aa4.44□□□□□ -1.7
PTPRC-213ENST00000529828 A0A1W2PPC1 479 aa4.44□□□□□ -1.7
PTPRC-213ENST00000529828 TRIM75PA6NK02 468 aa4.44□□□□□ -1.7
PTPRC-213ENST00000529828 VAMP4O75379 141 aa4.44□□□□□ -1.7
PTPRC-213ENST00000529828 NBPF7P0C2Y1 421 aaPredicted RBP4.44□□□□□ -1.7
PTPRC-213ENST00000529828 PRDX5P30044 214 aa4.44□□□□□ -1.7
PTPRC-213ENST00000529828 ZEB1P37275 1124 aaPredicted RBP4.44□□□□□ -1.7
PTPRC-213ENST00000529828 MAGEA10P43363 369 aaPredicted RBP4.44□□□□□ -1.7
PTPRC-213ENST00000529828 HDLBPQ00341 1268 aaKnown RBP4.44□□□□□ -1.7
PTPRC-213ENST00000529828 ANKRD13CQ8N6S4 541 aa4.44□□□□□ -1.7
PTPRC-213ENST00000529828 HOOK2Q96ED9 719 aa4.44□□□□□ -1.7
PTPRC-213ENST00000529828 FAM161BQ96MY7 647 aa4.44□□□□□ -1.7
PTPRC-213ENST00000529828 GDF15Q99988 308 aa4.44□□□□□ -1.7
PTPRC-213ENST00000529828 COL25A1Q9BXS0 654 aaPredicted RBP4.44□□□□□ -1.7
PTPRC-213ENST00000529828 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.44□□□□□ -1.7
PTPRC-213ENST00000529828 PAK6Q9NQU5 681 aaPredicted RBP4.44□□□□□ -1.7
PTPRC-213ENST00000529828 FAM198AQ9UFP1 575 aa4.44□□□□□ -1.7
PTPRC-213ENST00000529828 ZNF112Q9UJU3 913 aa4.44□□□□□ -1.7
PTPRC-213ENST00000529828 FBXO3Q9UK99 471 aa4.44□□□□□ -1.7
PTPRC-213ENST00000529828 ZHX2Q9Y6X8 837 aa4.44□□□□□ -1.7
PTPRC-213ENST00000529828 ALPK3Q96L96 1907 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 MAST3O60307 1309 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 A0A0G2JLL6 359 aaPredicted RBP4.43□□□□□ -1.7
PTPRC-213ENST00000529828 NOL9Q5SY16 702 aaKnown RBP4.43□□□□□ -1.7
PTPRC-213ENST00000529828 TREML2Q5T2D2 321 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 FKBP1CQ5VVH2 108 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 HHIPL2Q6UWX4 724 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 NECAB2Q7Z6G3 386 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 PRRT2Q7Z6L0 340 aaPredicted RBP4.43□□□□□ -1.7
PTPRC-213ENST00000529828 ZSCAN29Q8IWY8 852 aaPredicted RBP4.43□□□□□ -1.7
PTPRC-213ENST00000529828 ANKRD44Q8N8A2 993 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 VGLL2Q8N8G2 317 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 IRX2Q9BZI1 471 aaPredicted RBP4.43□□□□□ -1.7
PTPRC-213ENST00000529828 SRCIN1Q9C0H9 1055 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 PICK1Q9NRD5 415 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 USP40Q9NVE5 1235 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 FAM196BA6NMK8 535 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 PHF20L1A8MW92 1017 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 CXCL11O14625 94 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 PEX10O60683 326 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 PDE8BO95263 885 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 PTPRAP18433 802 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 RGS3P49796 1198 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 PICALMQ13492 652 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 SH3BP5LQ7L8J4 393 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 SCYL3Q8IZE3 742 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 UBE2OQ9C0C9 1292 aaKnown RBP4.43□□□□□ -1.7
PTPRC-213ENST00000529828 CRISPLD2Q9H0B8 497 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 MTMR10Q9NXD2 777 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 STXBP5LQ9Y2K9 1186 aa4.43□□□□□ -1.7
PTPRC-213ENST00000529828 ATRNL1Q5VV63 1379 aa4.42□□□□□ -1.7
PTPRC-213ENST00000529828 IFIT1P09914 478 aaKnown RBP4.42□□□□□ -1.7
PTPRC-213ENST00000529828 FGFR2P21802 821 aa4.42□□□□□ -1.7
PTPRC-213ENST00000529828 MDM2Q00987 491 aaPredicted RBP4.42□□□□□ -1.7
PTPRC-213ENST00000529828 PUM3Q15397 648 aaKnown RBP4.42□□□□□ -1.7
PTPRC-213ENST00000529828 CCDC27Q2M243 656 aa4.42□□□□□ -1.7
PTPRC-213ENST00000529828 FASTKD5Q7L8L6 764 aaKnown RBP4.42□□□□□ -1.7
PTPRC-213ENST00000529828 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.42□□□□□ -1.7
PTPRC-213ENST00000529828 TDHQ8IZJ6 230 aa4.42□□□□□ -1.7
PTPRC-213ENST00000529828 PXYLP1Q8TE99 480 aa4.42□□□□□ -1.7
PTPRC-213ENST00000529828 COA7Q96BR5 231 aa4.42□□□□□ -1.7
PTPRC-213ENST00000529828 C11orf49Q9H6J7 331 aa4.42□□□□□ -1.7
PTPRC-213ENST00000529828 AFG3L2Q9Y4W6 797 aa4.42□□□□□ -1.7
PTPRC-213ENST00000529828 LRRFIP2Q9Y608 721 aaKnown RBP4.42□□□□□ -1.7
PTPRC-213ENST00000529828 MGAMO43451 1857 aa4.42□□□□□ -1.7
PTPRC-213ENST00000529828 IL16Q14005 1332 aa4.42□□□□□ -1.7
PTPRC-213ENST00000529828 AK9Q5TCS8 1911 aa4.42□□□□□ -1.7
PTPRC-213ENST00000529828 XIRP2A4UGR9 3374 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 DDTLA6NHG4 134 aaPredicted RBP4.41□□□□□ -1.7
PTPRC-213ENST00000529828 ALDH1L1O75891 902 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 HMGCRP04035 888 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 LDHBP07195 334 aaKnown RBP4.41□□□□□ -1.7
PTPRC-213ENST00000529828 CYP2B6P20813 491 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 IRF5Q13568 498 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 GUCD1Q96NT3 240 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 MRIQ9BWK5 157 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 NBPF3Q9H094 633 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 SIL1Q9H173 461 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 DDX4Q9NQI0 724 aaKnown RBP4.41□□□□□ -1.7
PTPRC-213ENST00000529828 SUGT1Q9Y2Z0 365 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 PFASO15067 1338 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 DDX60LQ5H9U9 1706 aaKnown RBP4.41□□□□□ -1.7
PTPRC-213ENST00000529828 SLC5A1P13866 664 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 BMP8BP34820 402 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 LRIT3Q3SXY7 679 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 RABL6Q3YEC7 729 aaPredicted RBP4.41□□□□□ -1.7
PTPRC-213ENST00000529828 WDR66Q8TBY9 1149 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 TRIB2Q92519 343 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 HMX1Q9NP08 348 aaPredicted RBP4.41□□□□□ -1.7
PTPRC-213ENST00000529828 AGTPBP1Q9UPW5 1226 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 RPTORQ8N122 1335 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 DOCK2Q92608 1830 aa4.41□□□□□ -1.7
PTPRC-213ENST00000529828 RFX7Q2KHR2 1363 aa4.4□□□□□ -1.7
PTPRC-213ENST00000529828 EYA2O00167 538 aa4.4□□□□□ -1.7
PTPRC-213ENST00000529828 EIF5BO60841 1220 aaKnown RBP4.4□□□□□ -1.7
PTPRC-213ENST00000529828 ADORA1P30542 326 aa4.4□□□□□ -1.7
PTPRC-213ENST00000529828 PHKA1P46020 1223 aa4.4□□□□□ -1.7
PTPRC-213ENST00000529828 HMGCS2P54868 508 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms