RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 PATL2C9JE40 543 aaKnown RBP16.78■□□□□ 0.28
USF1-209ENST00000529476 FOXP2O15409 715 aa16.78■□□□□ 0.28
USF1-209ENST00000529476 APPP05067 770 aa16.78■□□□□ 0.28
USF1-209ENST00000529476 SLURP2P0DP57 97 aa16.78■□□□□ 0.28
USF1-209ENST00000529476 MOB2Q70IA6 237 aa16.78■□□□□ 0.28
USF1-209ENST00000529476 MIGA2Q7L4E1 593 aa16.78■□□□□ 0.28
USF1-209ENST00000529476 GBA2Q9HCG7 927 aaPredicted RBP16.78■□□□□ 0.28
USF1-209ENST00000529476 EPB41L4AQ9HCS5 686 aaPredicted RBP16.78■□□□□ 0.28
USF1-209ENST00000529476 MCM9Q9NXL9 1143 aa16.78■□□□□ 0.28
USF1-209ENST00000529476 PAPPA2Q9BXP8 1791 aa16.78■□□□□ 0.28
USF1-209ENST00000529476 CYP2D6P10635 497 aa16.77■□□□□ 0.28
USF1-209ENST00000529476 EVX2Q03828 476 aa16.77■□□□□ 0.28
USF1-209ENST00000529476 RUFY2Q8WXA3 655 aa16.77■□□□□ 0.28
USF1-209ENST00000529476 DHX36Q9H2U1 1008 aaKnown RBP16.77■□□□□ 0.28
USF1-209ENST00000529476 RAD50Q92878 1312 aa16.76■□□□□ 0.27
USF1-209ENST00000529476 CYP2D7A0A087X1C5 515 aa16.76■□□□□ 0.27
USF1-209ENST00000529476 CDC45O75419 566 aa16.76■□□□□ 0.27
USF1-209ENST00000529476 POLR3DP05423 398 aaPredicted RBP16.76■□□□□ 0.27
USF1-209ENST00000529476 PLCD1P51178 756 aa16.76■□□□□ 0.27
USF1-209ENST00000529476 MFAP1P55081 439 aaKnown RBP16.76■□□□□ 0.27
USF1-209ENST00000529476 TTLL12Q14166 644 aaPredicted RBP16.76■□□□□ 0.27
USF1-209ENST00000529476 IFNL3Q8IZI9 196 aa16.76■□□□□ 0.27
USF1-209ENST00000529476 C2orf69Q8N8R5 385 aa16.76■□□□□ 0.27
USF1-209ENST00000529476 HOOK2Q96ED9 719 aa16.76■□□□□ 0.27
USF1-209ENST00000529476 DDRGK1Q96HY6 314 aa16.76■□□□□ 0.27
USF1-209ENST00000529476 PI4KBQ9UBF8 816 aa16.76■□□□□ 0.27
USF1-209ENST00000529476 ANGEL1Q9UNK9 670 aaKnown RBP16.76■□□□□ 0.27
USF1-209ENST00000529476 OTOFQ9HC10 1997 aa16.76■□□□□ 0.27
USF1-209ENST00000529476 LAMB1P07942 1786 aa16.76■□□□□ 0.27
USF1-209ENST00000529476 FAM196BA6NMK8 535 aa16.75■□□□□ 0.27
USF1-209ENST00000529476 USP17L12C9JPN9 530 aa16.75■□□□□ 0.27
USF1-209ENST00000529476 USP17L21D6R901 530 aa16.75■□□□□ 0.27
USF1-209ENST00000529476 SGSM2O43147 1006 aa16.75■□□□□ 0.27
USF1-209ENST00000529476 CA12O43570 354 aa16.75■□□□□ 0.27
USF1-209ENST00000529476 PPP1R12BO60237 982 aaPredicted RBP16.75■□□□□ 0.27
USF1-209ENST00000529476 USP2O75604 605 aaPredicted RBP16.75■□□□□ 0.27
USF1-209ENST00000529476 HLA-DOAP06340 250 aa16.75■□□□□ 0.27
USF1-209ENST00000529476 HSPD1P10809 573 aaKnown RBP16.75■□□□□ 0.27
USF1-209ENST00000529476 TDO2P48775 406 aa16.75■□□□□ 0.27
USF1-209ENST00000529476 DCAF15Q66K64 600 aa16.75■□□□□ 0.27
USF1-209ENST00000529476 GIMAP6Q6P9H5 292 aa16.75■□□□□ 0.27
USF1-209ENST00000529476 CTR9Q6PD62 1173 aa16.75■□□□□ 0.27
USF1-209ENST00000529476 NACAP1Q9BZK3 213 aa16.75■□□□□ 0.27
USF1-209ENST00000529476 UBE2Q2LH0YL09 131 aa16.74■□□□□ 0.27
USF1-209ENST00000529476 SMIM22K7EJ46 135 aa16.74■□□□□ 0.27
USF1-209ENST00000529476 FKBP1BP68106 108 aa16.74■□□□□ 0.27
USF1-209ENST00000529476 TTC6Q86TZ1 520 aa16.74■□□□□ 0.27
USF1-209ENST00000529476 SAPCD2Q86UD0 394 aa16.74■□□□□ 0.27
USF1-209ENST00000529476 ESYT1Q9BSJ8 1104 aa16.74■□□□□ 0.27
USF1-209ENST00000529476 MAP3K10Q02779 954 aa16.73■□□□□ 0.27
USF1-209ENST00000529476 C12orf60Q5U649 245 aa16.73■□□□□ 0.27
USF1-209ENST00000529476 CASC1Q6TDU7 716 aa16.73■□□□□ 0.27
USF1-209ENST00000529476 ARMC9Q7Z3E5 817 aa16.73■□□□□ 0.27
USF1-209ENST00000529476 FOXP4Q8IVH2 680 aaPredicted RBP16.73■□□□□ 0.27
USF1-209ENST00000529476 CRACR2BQ8N4Y2 399 aaPredicted RBP16.73■□□□□ 0.27
USF1-209ENST00000529476 ZNF341Q9BYN7 854 aa16.73■□□□□ 0.27
USF1-209ENST00000529476 NAPBQ9H115 298 aa16.73■□□□□ 0.27
USF1-209ENST00000529476 DNAJC18Q9H819 358 aa16.73■□□□□ 0.27
USF1-209ENST00000529476 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.73■□□□□ 0.27
USF1-209ENST00000529476 ARPP21Q9UBL0 812 aaPredicted RBP16.73■□□□□ 0.27
USF1-209ENST00000529476 MINDY4BA8MYZ0 360 aa16.72■□□□□ 0.27
USF1-209ENST00000529476 TBC1D12O60347 775 aa16.72■□□□□ 0.27
USF1-209ENST00000529476 IREB2P48200 963 aaKnown RBP16.72■□□□□ 0.27
USF1-209ENST00000529476 SOX10P56693 466 aa16.72■□□□□ 0.27
USF1-209ENST00000529476 ALX1Q15699 326 aa16.72■□□□□ 0.27
USF1-209ENST00000529476 MAP3K11Q16584 847 aa16.72■□□□□ 0.27
USF1-209ENST00000529476 SBK1Q52WX2 424 aa16.72■□□□□ 0.27
USF1-209ENST00000529476 METTL16Q86W50 562 aaKnown RBP16.72■□□□□ 0.27
USF1-209ENST00000529476 AMOTL1Q8IY63 956 aa16.72■□□□□ 0.27
USF1-209ENST00000529476 DYNLL2Q96FJ2 89 aa16.72■□□□□ 0.27
USF1-209ENST00000529476 ZIC5Q96T25 663 aa16.72■□□□□ 0.27
USF1-209ENST00000529476 EHD4Q9H223 541 aa16.72■□□□□ 0.27
USF1-209ENST00000529476 HERC5Q9UII4 1024 aaKnown RBP16.72■□□□□ 0.27
USF1-209ENST00000529476 SERPINB13Q9UIV8 391 aa16.72■□□□□ 0.27
USF1-209ENST00000529476 MYH8P13535 1937 aa16.71■□□□□ 0.27
USF1-209ENST00000529476 PHF20L1A8MW92 1017 aa16.71■□□□□ 0.27
USF1-209ENST00000529476 FGAP02671 866 aa16.71■□□□□ 0.27
USF1-209ENST00000529476 HUNKP57058 714 aa16.71■□□□□ 0.27
USF1-209ENST00000529476 PTH1RQ03431 593 aa16.71■□□□□ 0.27
USF1-209ENST00000529476 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.71■□□□□ 0.27
USF1-209ENST00000529476 WRNIP1Q96S55 665 aa16.71■□□□□ 0.27
USF1-209ENST00000529476 DSCC1Q9BVC3 393 aa16.71■□□□□ 0.27
USF1-209ENST00000529476 TRIM34Q9BYJ4 488 aa16.71■□□□□ 0.27
USF1-209ENST00000529476 ZNF112Q9UJU3 913 aa16.71■□□□□ 0.27
USF1-209ENST00000529476 INPP5BP32019 993 aa16.7■□□□□ 0.26
USF1-209ENST00000529476 GABPAQ06546 454 aa16.7■□□□□ 0.26
USF1-209ENST00000529476 RRP1BQ14684 758 aaKnown RBP16.7■□□□□ 0.26
USF1-209ENST00000529476 LDLRAD1Q5T700 205 aa16.7■□□□□ 0.26
USF1-209ENST00000529476 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.7■□□□□ 0.26
USF1-209ENST00000529476 STK11IPQ8N1F8 1099 aa16.7■□□□□ 0.26
USF1-209ENST00000529476 SLC44A5Q8NCS7 719 aa16.7■□□□□ 0.26
USF1-209ENST00000529476 ZKSCAN4Q969J2 545 aaPredicted RBP16.7■□□□□ 0.26
USF1-209ENST00000529476 CLMNQ96JQ2 1002 aa16.7■□□□□ 0.26
USF1-209ENST00000529476 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.7■□□□□ 0.26
USF1-209ENST00000529476 LAMA4Q16363 1823 aa16.7■□□□□ 0.26
USF1-209ENST00000529476 ATAD5Q96QE3 1844 aa16.7■□□□□ 0.26
USF1-209ENST00000529476 ZMYM6O95789 1325 aa16.7■□□□□ 0.26
USF1-209ENST00000529476 DOCK1Q14185 1865 aa16.69■□□□□ 0.26
USF1-209ENST00000529476 MAP3K9P80192 1104 aa16.69■□□□□ 0.26
USF1-209ENST00000529476 PPARAQ07869 468 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms