RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 PROCA1Q8NCQ7 364 aaPredicted RBP13.04□□□□□ -0.32
CPSF1-203ENST00000527916 IDI2Q9BXS1 227 aa13.04□□□□□ -0.32
CPSF1-203ENST00000527916 ATRNL1Q5VV63 1379 aa13.04□□□□□ -0.32
CPSF1-203ENST00000527916 MAP3K10Q02779 954 aa13.03□□□□□ -0.32
CPSF1-203ENST00000527916 ATF7IPQ6VMQ6 1270 aa13.03□□□□□ -0.32
CPSF1-203ENST00000527916 SLF2Q8IX21 1173 aa13.03□□□□□ -0.32
CPSF1-203ENST00000527916 MEIS3Q99687 375 aa13.03□□□□□ -0.32
CPSF1-203ENST00000527916 COPRSQ9NQ92 184 aa13.03□□□□□ -0.32
CPSF1-203ENST00000527916 CEP126Q9P2H0 1117 aa13.03□□□□□ -0.32
CPSF1-203ENST00000527916 DOCK2Q92608 1830 aa13.03□□□□□ -0.32
CPSF1-203ENST00000527916 DDX60LQ5H9U9 1706 aaKnown RBP13.02□□□□□ -0.32
CPSF1-203ENST00000527916 POTEB2H3BUK9 544 aa13.02□□□□□ -0.33
CPSF1-203ENST00000527916 BCAR3O75815 825 aa13.02□□□□□ -0.33
CPSF1-203ENST00000527916 TRIM27P14373 513 aa13.02□□□□□ -0.33
CPSF1-203ENST00000527916 IL15P40933 162 aaPredicted RBP13.02□□□□□ -0.33
CPSF1-203ENST00000527916 HNRNPUQ00839 825 aaKnown RBP eCLIP13.02□□□□□ -0.33
CPSF1-203ENST00000527916 MTX1Q13505 466 aa13.02□□□□□ -0.33
CPSF1-203ENST00000527916 TREML2Q5T2D2 321 aa13.02□□□□□ -0.33
CPSF1-203ENST00000527916 ZGPATQ8N5A5 531 aaKnown RBP13.02□□□□□ -0.33
CPSF1-203ENST00000527916 TBC1D2Q9BYX2 928 aa13.02□□□□□ -0.33
CPSF1-203ENST00000527916 GJD2Q9UKL4 321 aa13.02□□□□□ -0.33
CPSF1-203ENST00000527916 DOCK1Q14185 1865 aa13.02□□□□□ -0.33
CPSF1-203ENST00000527916 SEMA3EO15041 775 aa13.01□□□□□ -0.33
CPSF1-203ENST00000527916 PRKAR2AP13861 404 aaKnown RBP13.01□□□□□ -0.33
CPSF1-203ENST00000527916 TRIM32Q13049 653 aa13.01□□□□□ -0.33
CPSF1-203ENST00000527916 TRMT44Q8IYL2 757 aaKnown RBP13.01□□□□□ -0.33
CPSF1-203ENST00000527916 LBHD1Q9BQE6 289 aaPredicted RBP13.01□□□□□ -0.33
CPSF1-203ENST00000527916 DENND2AQ9ULE3 1009 aa13.01□□□□□ -0.33
CPSF1-203ENST00000527916 SALL1Q9NSC2 1324 aa13.01□□□□□ -0.33
CPSF1-203ENST00000527916 SPTBN5Q9NRC6 3674 aaKnown RBP13□□□□□ -0.33
CPSF1-203ENST00000527916 MYH2Q9UKX2 1941 aa13□□□□□ -0.33
CPSF1-203ENST00000527916 PHIPQ8WWQ0 1821 aa13□□□□□ -0.33
CPSF1-203ENST00000527916 PFASO15067 1338 aa13□□□□□ -0.33
CPSF1-203ENST00000527916 DDTLA6NHG4 134 aaPredicted RBP13□□□□□ -0.33
CPSF1-203ENST00000527916 TBC1D12O60347 775 aa13□□□□□ -0.33
CPSF1-203ENST00000527916 XRCC5P13010 732 aaKnown RBP13□□□□□ -0.33
CPSF1-203ENST00000527916 MDM2Q00987 491 aaPredicted RBP13□□□□□ -0.33
CPSF1-203ENST00000527916 SPP2Q13103 211 aa13□□□□□ -0.33
CPSF1-203ENST00000527916 ATP2B3Q16720 1220 aa13□□□□□ -0.33
CPSF1-203ENST00000527916 MAP3K21Q5TCX8 1036 aa13□□□□□ -0.33
CPSF1-203ENST00000527916 SH3BP5LQ7L8J4 393 aa13□□□□□ -0.33
CPSF1-203ENST00000527916 DZIP1Q86YF9 867 aaKnown RBP13□□□□□ -0.33
CPSF1-203ENST00000527916 ZNF280CQ8ND82 737 aa13□□□□□ -0.33
CPSF1-203ENST00000527916 SOCS4Q8WXH5 440 aa13□□□□□ -0.33
CPSF1-203ENST00000527916 TRIB2Q92519 343 aa13□□□□□ -0.33
CPSF1-203ENST00000527916 GUCD1Q96NT3 240 aa13□□□□□ -0.33
CPSF1-203ENST00000527916 NUDT12Q9BQG2 462 aa13□□□□□ -0.33
CPSF1-203ENST00000527916 SIL1Q9H173 461 aa13□□□□□ -0.33
CPSF1-203ENST00000527916 GAKO14976 1311 aa12.99□□□□□ -0.33
CPSF1-203ENST00000527916 COL6A1P12109 1028 aa12.99□□□□□ -0.33
CPSF1-203ENST00000527916 CYP2B6P20813 491 aa12.99□□□□□ -0.33
CPSF1-203ENST00000527916 PICALMQ13492 652 aa12.99□□□□□ -0.33
CPSF1-203ENST00000527916 PDE3AQ14432 1141 aa12.99□□□□□ -0.33
CPSF1-203ENST00000527916 ZNF697Q5TEC3 545 aa12.99□□□□□ -0.33
CPSF1-203ENST00000527916 ZKSCAN2Q63HK3 967 aa12.99□□□□□ -0.33
CPSF1-203ENST00000527916 CCDC84Q86UT8 332 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-203ENST00000527916 FRAT1Q92837 279 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-203ENST00000527916 FAM161BQ96MY7 647 aa12.99□□□□□ -0.33
CPSF1-203ENST00000527916 OSBPL5Q9H0X9 879 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-203ENST00000527916 ASCC2Q9H1I8 757 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-203ENST00000527916 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.99□□□□□ -0.33
CPSF1-203ENST00000527916 SRGAP3O43295 1099 aa12.98□□□□□ -0.33
CPSF1-203ENST00000527916 GNAI2P04899 355 aa12.98□□□□□ -0.33
CPSF1-203ENST00000527916 ZKSCAN1P17029 563 aaPredicted RBP12.98□□□□□ -0.33
CPSF1-203ENST00000527916 HMGCS2P54868 508 aa12.98□□□□□ -0.33
CPSF1-203ENST00000527916 IRX3P78415 501 aaPredicted RBP12.98□□□□□ -0.33
CPSF1-203ENST00000527916 SPTY2D1Q68D10 685 aaPredicted RBP12.98□□□□□ -0.33
CPSF1-203ENST00000527916 CCAR1Q8IX12 1150 aaKnown RBP12.98□□□□□ -0.33
CPSF1-203ENST00000527916 PRDM6Q9NQX0 595 aa12.98□□□□□ -0.33
CPSF1-203ENST00000527916 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.98□□□□□ -0.33
CPSF1-203ENST00000527916 MORF4L1Q9UBU8 362 aa12.98□□□□□ -0.33
CPSF1-203ENST00000527916 PA2G4Q9UQ80 394 aaKnown RBP12.98□□□□□ -0.33
CPSF1-203ENST00000527916 AKAP2Q9Y2D5 859 aa12.98□□□□□ -0.33
CPSF1-203ENST00000527916 RFX7Q2KHR2 1363 aa12.97□□□□□ -0.33
CPSF1-203ENST00000527916 ZBED9Q6R2W3 1325 aa12.97□□□□□ -0.33
CPSF1-203ENST00000527916 LRRC26Q2I0M4 334 aa12.97□□□□□ -0.33
CPSF1-203ENST00000527916 GPRC5AQ8NFJ5 357 aa12.97□□□□□ -0.33
CPSF1-203ENST00000527916 FAM163AQ96GL9 167 aaPredicted RBP12.97□□□□□ -0.33
CPSF1-203ENST00000527916 AS3MTQ9HBK9 375 aa12.97□□□□□ -0.33
CPSF1-203ENST00000527916 DDX4Q9NQI0 724 aaKnown RBP12.97□□□□□ -0.33
CPSF1-203ENST00000527916 ABCF2Q9UG63 623 aa12.97□□□□□ -0.33
CPSF1-203ENST00000527916 PRKAG2Q9UGJ0 569 aa12.97□□□□□ -0.33
CPSF1-203ENST00000527916 PDS5AQ29RF7 1337 aaKnown RBP12.96□□□□□ -0.33
CPSF1-203ENST00000527916 USP17L5A8MUK1 530 aa12.96□□□□□ -0.33
CPSF1-203ENST00000527916 NPM3O75607 178 aaKnown RBP12.96□□□□□ -0.33
CPSF1-203ENST00000527916 MAPK4P31152 587 aa12.96□□□□□ -0.33
CPSF1-203ENST00000527916 BTDP43251 543 aa12.96□□□□□ -0.33
CPSF1-203ENST00000527916 CACNB2Q08289 660 aaPredicted RBP12.96□□□□□ -0.33
CPSF1-203ENST00000527916 SYMPKQ92797 1274 aaKnown RBP12.96□□□□□ -0.33
CPSF1-203ENST00000527916 CLUAP1Q96AJ1 413 aa12.96□□□□□ -0.33
CPSF1-203ENST00000527916 TMOD4Q9NZQ9 345 aa12.96□□□□□ -0.33
CPSF1-203ENST00000527916 TNNQ9UQP3 1299 aa12.96□□□□□ -0.33
CPSF1-203ENST00000527916 LOC285556D6RIA3 1793 aa12.96□□□□□ -0.34
CPSF1-203ENST00000527916 MAP4K4O95819 1239 aaPredicted RBP12.95□□□□□ -0.34
CPSF1-203ENST00000527916 SLURP2P0DP57 97 aa12.95□□□□□ -0.34
CPSF1-203ENST00000527916 CAP2P40123 477 aa12.95□□□□□ -0.34
CPSF1-203ENST00000527916 RGS2P41220 211 aa12.95□□□□□ -0.34
CPSF1-203ENST00000527916 PHKA1P46020 1223 aa12.95□□□□□ -0.34
CPSF1-203ENST00000527916 TIMM10P62072 90 aa12.95□□□□□ -0.34
CPSF1-203ENST00000527916 SH3D19Q5HYK7 790 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms