RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 EXOC5O00471 708 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 LILRA1O75019 489 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 RTN3O95197 1032 aaPredicted RBP6.64□□□□□ -1.35
CD44-225ENST00000527326 GOLGA6DP0CG33 693 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 SLC8A1P32418 973 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 ADD1P35611 737 aaKnown RBP6.64□□□□□ -1.35
CD44-225ENST00000527326 GNAI1P63096 354 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 CCZ1BP86790 482 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 CCZ1P86791 482 aaPredicted RBP6.64□□□□□ -1.35
CD44-225ENST00000527326 TYRO3Q06418 890 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 TMED1Q13445 227 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 SLMAPQ14BN4 828 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 FBXW10Q5XX13 1052 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 GIMAP6Q6P9H5 292 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 SPATA21Q7Z572 469 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 C3orf20Q8ND61 904 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 ACRBPQ8NEB7 543 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 AFAP1L1Q8TED9 768 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 GOLGA1Q92805 767 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 UBA5Q9GZZ9 404 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 KIF9Q9HAQ2 790 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 CBX8Q9HC52 389 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 GOLGA6AQ9NYA3 693 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 NRBP1Q9UHY1 535 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 AKAP2Q9Y2D5 859 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 PCDHB9Q9Y5E1 797 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.64□□□□□ -1.35
CD44-225ENST00000527326 MAP3K5Q99683 1374 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 ERBINQ96RT1 1412 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 MAGI3Q5TCQ9 1506 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 DISP1Q96F81 1524 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 DNMT1P26358 1616 aaKnown RBP6.64□□□□□ -1.35
CD44-225ENST00000527326 EME2A4GXA9 379 aaPredicted RBP6.63□□□□□ -1.35
CD44-225ENST00000527326 GOLGA6L10A6NI86 522 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 ZBBXA8MT70 800 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 LIN7AO14910 233 aaPredicted RBP6.63□□□□□ -1.35
CD44-225ENST00000527326 SMARCA5O60264 1052 aaPredicted RBP6.63□□□□□ -1.35
CD44-225ENST00000527326 SHOX2O60902 331 aaPredicted RBP6.63□□□□□ -1.35
CD44-225ENST00000527326 KIAA0754O94854 1291 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 ADH1AP07327 375 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 FESP07332 822 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 PTGIRP43119 386 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 USP5P45974 858 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 NAP1L1P55209 391 aaKnown RBP6.63□□□□□ -1.35
CD44-225ENST00000527326 ETF1P62495 437 aaKnown RBP6.63□□□□□ -1.35
CD44-225ENST00000527326 RASA3Q14644 834 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 IQCB1Q15051 598 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 CCDC38Q502W7 563 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 CEP85LQ5SZL2 805 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 TLDC1Q6P9B6 456 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 MICALCLQ6ZW33 695 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 B4GALNT4Q76KP1 1039 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 RSRC2Q7L4I2 434 aaKnown RBP6.63□□□□□ -1.35
CD44-225ENST00000527326 TTC21BQ7Z4L5 1316 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 APLFQ8IW19 511 aaPredicted RBP6.63□□□□□ -1.35
CD44-225ENST00000527326 OR8K1Q8NGG5 319 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 PARD3BQ8TEW8 1205 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 HOOK2Q96ED9 719 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 GJD4Q96KN9 370 aaPredicted RBP6.63□□□□□ -1.35
CD44-225ENST00000527326 PPP1R13BQ96KQ4 1090 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 CNTNAP3BQ96NU0 1288 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 CNTNAP3Q9BZ76 1288 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 LNPKQ9C0E8 428 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 NUP62CLQ9H1M0 184 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 RMI1Q9H9A7 625 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 CYLDQ9NQC7 956 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 EIF2AK4Q9P2K8 1649 aaKnown RBP6.63□□□□□ -1.35
CD44-225ENST00000527326 SUN2Q9UH99 717 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 FAN1Q9Y2M0 1017 aa6.63□□□□□ -1.35
CD44-225ENST00000527326 IQSEC2Q5JU85 1478 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 RGS12O14924 1447 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 ZNF644Q9H582 1327 aaPredicted RBP6.62□□□□□ -1.35
CD44-225ENST00000527326 SLC35F4A4IF30 521 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 ZSCAN9O15535 394 aaPredicted RBP6.62□□□□□ -1.35
CD44-225ENST00000527326 OPA1O60313 960 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 ECEL1O95672 775 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 NBPF7P0C2Y1 421 aaPredicted RBP6.62□□□□□ -1.35
CD44-225ENST00000527326 TXLNAP40222 546 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 FNTAP49354 379 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 CDR1P51861 262 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 SMTNP53814 917 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 TMF1P82094 1093 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 PSME1Q06323 249 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 IFFO1Q0D2I5 559 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 G3BP1Q13283 466 aaKnown RBP eCLIP6.62□□□□□ -1.35
CD44-225ENST00000527326 DRP2Q13474 957 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 LAMB3Q13751 1172 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 NAA25Q14CX7 972 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 DBN1Q16643 649 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 KIF4BQ2VIQ3 1234 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 CCDC144BQ3MJ40 725 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 CCDC178Q5BJE1 867 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 YTHDF3Q7Z739 585 aaKnown RBP6.62□□□□□ -1.35
CD44-225ENST00000527326 FCHSD1Q86WN1 690 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 MYLK4Q86YV6 388 aaPredicted RBP6.62□□□□□ -1.35
CD44-225ENST00000527326 CCDC144CPQ8IYA2 1237 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 SEPT12Q8IYM1 358 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 CCDC170Q8IYT3 715 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 VWA5B2Q8N398 1253 aa6.62□□□□□ -1.35
CD44-225ENST00000527326 ADAMTS19Q8TE59 1207 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms