RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 FANCBQ8NB91 859 aa24.44■■□□□ 1.5
VPS28-205ENST00000526204 CNNM3Q8NE01 707 aa24.44■■□□□ 1.5
VPS28-205ENST00000526204 ACSBG1Q96GR2 724 aa24.44■■□□□ 1.5
VPS28-205ENST00000526204 ROBO1Q9Y6N7 1651 aa24.44■■□□□ 1.5
VPS28-205ENST00000526204 KIF2AO00139 706 aaPredicted RBP24.44■■□□□ 1.5
VPS28-205ENST00000526204 ESR2Q92731 530 aa24.44■■□□□ 1.5
VPS28-205ENST00000526204 ZKSCAN3Q9BRR0 538 aa24.44■■□□□ 1.5
VPS28-205ENST00000526204 BCL9LQ86UU0 1499 aa24.43■■□□□ 1.5
VPS28-205ENST00000526204 AHDC1Q5TGY3 1603 aaPredicted RBP24.43■■□□□ 1.5
VPS28-205ENST00000526204 GUCY1A2P33402 732 aa24.43■■□□□ 1.5
VPS28-205ENST00000526204 KCNJ6P48051 423 aa24.43■■□□□ 1.5
VPS28-205ENST00000526204 FANCCQ00597 558 aa24.43■■□□□ 1.5
VPS28-205ENST00000526204 PNOCQ13519 176 aa24.43■■□□□ 1.5
VPS28-205ENST00000526204 OLFM4Q6UX06 510 aa24.43■■□□□ 1.5
VPS28-205ENST00000526204 TMC6Q7Z403 805 aa24.43■■□□□ 1.5
VPS28-205ENST00000526204 ZNF654Q8IZM8 581 aa24.43■■□□□ 1.5
VPS28-205ENST00000526204 SMARCC1Q92922 1105 aaPredicted RBP24.43■■□□□ 1.5
VPS28-205ENST00000526204 NOL10Q9BSC4 688 aaKnown RBP24.43■■□□□ 1.5
VPS28-205ENST00000526204 MAGEB6P1A0A0J9YX57 407 aa24.43■■□□□ 1.5
VPS28-205ENST00000526204 UBE2Q2LH0YL09 131 aa24.43■■□□□ 1.5
VPS28-205ENST00000526204 CBFA2T2O43439 604 aa24.43■■□□□ 1.5
VPS28-205ENST00000526204 SFPQP23246 707 aaKnown RBP eCLIP24.43■■□□□ 1.5
VPS28-205ENST00000526204 UBE4AQ14139 1066 aa24.43■■□□□ 1.5
VPS28-205ENST00000526204 LONRF3Q496Y0 759 aa24.43■■□□□ 1.5
VPS28-205ENST00000526204 MARCH10Q8NA82 808 aaPredicted RBP24.43■■□□□ 1.5
VPS28-205ENST00000526204 CHD4Q14839 1912 aa24.42■■□□□ 1.5
VPS28-205ENST00000526204 USP27XA6NNY8 438 aa24.42■■□□□ 1.5
VPS28-205ENST00000526204 LMOD1P29536 600 aaPredicted RBP24.42■■□□□ 1.5
VPS28-205ENST00000526204 METTL16Q86W50 562 aaKnown RBP24.42■■□□□ 1.5
VPS28-205ENST00000526204 ANKRD18AQ8IVF6 992 aa24.42■■□□□ 1.5
VPS28-205ENST00000526204 CEP131Q9UPN4 1083 aa24.42■■□□□ 1.5
VPS28-205ENST00000526204 BCORQ6W2J9 1755 aa24.42■■□□□ 1.5
VPS28-205ENST00000526204 CICQ96RK0 1608 aaPredicted RBP24.42■■□□□ 1.5
VPS28-205ENST00000526204 PTPREP23469 700 aa24.41■■□□□ 1.5
VPS28-205ENST00000526204 TOB1P50616 345 aaPredicted RBP24.41■■□□□ 1.5
VPS28-205ENST00000526204 STK11IPQ8N1F8 1099 aa24.41■■□□□ 1.5
VPS28-205ENST00000526204 PDCL2Q8N4E4 241 aa24.41■■□□□ 1.5
VPS28-205ENST00000526204 ZNF579Q8NAF0 562 aaKnown RBP24.41■■□□□ 1.5
VPS28-205ENST00000526204 RAI14Q9P0K7 980 aa24.41■■□□□ 1.5
VPS28-205ENST00000526204 PHLPP1O60346 1717 aa24.41■■□□□ 1.5
VPS28-205ENST00000526204 ECM29Q5VYK3 1845 aa24.41■■□□□ 1.5
VPS28-205ENST00000526204 LAMB2P55268 1798 aa24.41■■□□□ 1.5
VPS28-205ENST00000526204 ISM2Q6H9L7 571 aa24.41■■□□□ 1.5
VPS28-205ENST00000526204 ABCF2Q9UG63 623 aa24.41■■□□□ 1.5
VPS28-205ENST00000526204 KCNJ14Q9UNX9 436 aa24.41■■□□□ 1.5
VPS28-205ENST00000526204 CAVIN4Q5BKX8 364 aa24.4■■□□□ 1.5
VPS28-205ENST00000526204 NUP133Q8WUM0 1156 aa24.4■■□□□ 1.5
VPS28-205ENST00000526204 RNF26Q9BY78 433 aaPredicted RBP24.4■■□□□ 1.5
VPS28-205ENST00000526204 HSD3B7Q9H2F3 369 aa24.4■■□□□ 1.5
VPS28-205ENST00000526204 BSDC1Q9NW68 430 aaPredicted RBP24.4■■□□□ 1.5
VPS28-205ENST00000526204 LTBP4Q8N2S1 1624 aa24.4■■□□□ 1.5
VPS28-205ENST00000526204 XBP1P17861 261 aa24.4■■□□□ 1.5
VPS28-205ENST00000526204 SF3B3Q15393 1217 aaKnown RBP24.4■■□□□ 1.5
VPS28-205ENST00000526204 ARMCX5Q6P1M9 558 aa24.4■■□□□ 1.5
VPS28-205ENST00000526204 ZNF592Q92610 1267 aa24.4■■□□□ 1.5
VPS28-205ENST00000526204 FBXO2Q9UK22 296 aaPredicted RBP24.4■■□□□ 1.5
VPS28-205ENST00000526204 PCDHA5Q9Y5H7 936 aa24.4■■□□□ 1.5
VPS28-205ENST00000526204 PSDA5PKW4 1024 aaPredicted RBP24.39■■□□□ 1.49
VPS28-205ENST00000526204 MINDY4BA8MYZ0 360 aa24.39■■□□□ 1.49
VPS28-205ENST00000526204 PCP11498 1178 aaKnown RBP24.39■■□□□ 1.49
VPS28-205ENST00000526204 SEC23AQ15436 765 aa24.39■■□□□ 1.49
VPS28-205ENST00000526204 ADGRA1Q86SQ6 560 aa24.39■■□□□ 1.49
VPS28-205ENST00000526204 MDM2Q00987 491 aaPredicted RBP24.38■■□□□ 1.49
VPS28-205ENST00000526204 AKAP17AQ02040 695 aaKnown RBP24.38■■□□□ 1.49
VPS28-205ENST00000526204 SDR42E1Q8WUS8 393 aa24.38■■□□□ 1.49
VPS28-205ENST00000526204 BRIP1Q9BX63 1249 aa24.38■■□□□ 1.49
VPS28-205ENST00000526204 TRMT1Q9NXH9 659 aaKnown RBP24.38■■□□□ 1.49
VPS28-205ENST00000526204 MORC2Q9Y6X9 1032 aaPredicted RBP24.38■■□□□ 1.49
VPS28-205ENST00000526204 TNKSO95271 1327 aa24.38■■□□□ 1.49
VPS28-205ENST00000526204 SERPINC1P01008 464 aa24.38■■□□□ 1.49
VPS28-205ENST00000526204 UBASH3AP57075 661 aa24.38■■□□□ 1.49
VPS28-205ENST00000526204 FOXP4Q8IVH2 680 aaPredicted RBP24.38■■□□□ 1.49
VPS28-205ENST00000526204 CCDC82Q8N4S0 544 aa24.38■■□□□ 1.49
VPS28-205ENST00000526204 KIF18AQ8NI77 898 aa24.38■■□□□ 1.49
VPS28-205ENST00000526204 RIOK1Q9BRS2 568 aaKnown RBP24.38■■□□□ 1.49
VPS28-205ENST00000526204 IQSEC3Q9UPP2 1182 aaPredicted RBP24.38■■□□□ 1.49
VPS28-205ENST00000526204 TUBB4AP04350 444 aa24.37■■□□□ 1.49
VPS28-205ENST00000526204 GYG1P46976 350 aa24.37■■□□□ 1.49
VPS28-205ENST00000526204 NCBP1Q09161 790 aaKnown RBP24.37■■□□□ 1.49
VPS28-205ENST00000526204 KANK3Q6NY19 840 aa24.37■■□□□ 1.49
VPS28-205ENST00000526204 SRPRBQ9Y5M8 271 aaKnown RBP24.37■■□□□ 1.49
VPS28-205ENST00000526204 ATP1A3P13637 1013 aa24.37■■□□□ 1.49
VPS28-205ENST00000526204 RGL2O15211 777 aa24.36■■□□□ 1.49
VPS28-205ENST00000526204 ADAMTS2O95450 1211 aa24.36■■□□□ 1.49
VPS28-205ENST00000526204 POSTNQ15063 836 aa24.36■■□□□ 1.49
VPS28-205ENST00000526204 PPP4R3BQ5MIZ7 849 aa24.36■■□□□ 1.49
VPS28-205ENST00000526204 NT5DC1Q5TFE4 455 aa24.36■■□□□ 1.49
VPS28-205ENST00000526204 ZSCAN10Q96SZ4 725 aaPredicted RBP24.36■■□□□ 1.49
VPS28-205ENST00000526204 DACH1Q9UI36 760 aa24.36■■□□□ 1.49
VPS28-205ENST00000526204 ERFEQ4G0M1 354 aa24.35■■□□□ 1.49
VPS28-205ENST00000526204 E4F1Q66K89 784 aaPredicted RBP24.35■■□□□ 1.49
VPS28-205ENST00000526204 BARGINQ6ZT62 677 aa24.35■■□□□ 1.49
VPS28-205ENST00000526204 SEMA3EO15041 775 aa24.35■■□□□ 1.49
VPS28-205ENST00000526204 CCP110O43303 1012 aa24.35■■□□□ 1.49
VPS28-205ENST00000526204 NR5A1Q13285 461 aa24.35■■□□□ 1.49
VPS28-205ENST00000526204 CATIPQ7Z7H3 387 aa24.35■■□□□ 1.49
VPS28-205ENST00000526204 CMTR1Q8N1G2 835 aaKnown RBP24.35■■□□□ 1.49
VPS28-205ENST00000526204 RBM28Q9NW13 759 aaKnown RBP24.35■■□□□ 1.49
VPS28-205ENST00000526204 PCDHB6Q9Y5E3 794 aa24.35■■□□□ 1.49
VPS28-205ENST00000526204 SPATA31A5Q5VU36 1347 aa24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms