RNA–Protein interactions for RNA: ENST00000524927.1

NEDD8-203, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2 BASIC

Gene NEDD8, Length 653 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-203ENST00000524927 L3MBTL2Q969R5 705 aa9.93□□□□□ -0.82
NEDD8-203ENST00000524927 FAM122AQ96E09 287 aa9.93□□□□□ -0.82
NEDD8-203ENST00000524927 CNTNAP4Q9C0A0 1308 aa9.92□□□□□ -0.82
NEDD8-203ENST00000524927 ZNF541Q9H0D2 1346 aa9.92□□□□□ -0.82
NEDD8-203ENST00000524927 USP42Q9H9J4 1324 aaKnown RBP9.92□□□□□ -0.82
NEDD8-203ENST00000524927 ITGB4P16144 1822 aa9.92□□□□□ -0.82
NEDD8-203ENST00000524927 EML1O00423 815 aa9.92□□□□□ -0.82
NEDD8-203ENST00000524927 FAM13AO94988 1023 aa9.92□□□□□ -0.82
NEDD8-203ENST00000524927 RHBDD1Q8TEB9 315 aa9.92□□□□□ -0.82
NEDD8-203ENST00000524927 IP6K1Q92551 441 aa9.92□□□□□ -0.82
NEDD8-203ENST00000524927 SNX27Q96L92 541 aa9.92□□□□□ -0.82
NEDD8-203ENST00000524927 SPATA31C2B4DYI2 1134 aa9.91□□□□□ -0.82
NEDD8-203ENST00000524927 SHISA8B8ZZ34 492 aa9.91□□□□□ -0.82
NEDD8-203ENST00000524927 H0YGN5 161 aa9.91□□□□□ -0.82
NEDD8-203ENST00000524927 CELF2O95319 508 aaKnown RBP9.91□□□□□ -0.82
NEDD8-203ENST00000524927 MX2P20592 715 aa9.91□□□□□ -0.82
NEDD8-203ENST00000524927 COX20Q5RI15 118 aa9.91□□□□□ -0.82
NEDD8-203ENST00000524927 SH3PXD2AQ5TCZ1 1133 aa9.91□□□□□ -0.82
NEDD8-203ENST00000524927 FOXR1Q6PIV2 292 aa9.91□□□□□ -0.82
NEDD8-203ENST00000524927 ZDHHC1Q8WTX9 485 aa9.91□□□□□ -0.82
NEDD8-203ENST00000524927 HDAC9Q9UKV0 1011 aa9.91□□□□□ -0.82
NEDD8-203ENST00000524927 VCANP13611 3396 aa9.9□□□□□ -0.82
NEDD8-203ENST00000524927 PHF20L1A8MW92 1017 aa9.9□□□□□ -0.82
NEDD8-203ENST00000524927 OIP5O43482 229 aa9.9□□□□□ -0.82
NEDD8-203ENST00000524927 MAPK1P28482 360 aa9.9□□□□□ -0.82
NEDD8-203ENST00000524927 AAMPQ13685 434 aa9.9□□□□□ -0.82
NEDD8-203ENST00000524927 SOGA3Q5TF21 947 aa9.9□□□□□ -0.82
NEDD8-203ENST00000524927 BICDL1Q6ZP65 573 aa9.9□□□□□ -0.82
NEDD8-203ENST00000524927 ALDH16A1Q8IZ83 802 aa9.9□□□□□ -0.82
NEDD8-203ENST00000524927 GPC2Q8N158 579 aa9.9□□□□□ -0.82
NEDD8-203ENST00000524927 LTV1Q96GA3 475 aaPredicted RBP9.9□□□□□ -0.82
NEDD8-203ENST00000524927 TIMMDC1Q9NPL8 285 aa9.9□□□□□ -0.82
NEDD8-203ENST00000524927 KRBA1A5PL33 1030 aa9.89□□□□□ -0.83
NEDD8-203ENST00000524927 H7C1W4 665 aa9.89□□□□□ -0.83
NEDD8-203ENST00000524927 MPSTP25325 297 aa9.89□□□□□ -0.83
NEDD8-203ENST00000524927 PLA2G4AP47712 749 aa9.89□□□□□ -0.83
NEDD8-203ENST00000524927 UBAP2LQ14157 1087 aaKnown RBP9.89□□□□□ -0.83
NEDD8-203ENST00000524927 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.89□□□□□ -0.83
NEDD8-203ENST00000524927 RAPGEF4Q8WZA2 1011 aa9.89□□□□□ -0.83
NEDD8-203ENST00000524927 NUCKS1Q9H1E3 243 aaKnown RBP9.89□□□□□ -0.83
NEDD8-203ENST00000524927 STIM2Q9P246 746 aa9.89□□□□□ -0.83
NEDD8-203ENST00000524927 STXBP5LQ9Y2K9 1186 aa9.89□□□□□ -0.83
NEDD8-203ENST00000524927 BRCA2P51587 3418 aa9.89□□□□□ -0.83
NEDD8-203ENST00000524927 KDRP35968 1356 aa9.88□□□□□ -0.83
NEDD8-203ENST00000524927 SPTBN5Q9NRC6 3674 aaKnown RBP9.88□□□□□ -0.83
NEDD8-203ENST00000524927 ZNF831Q5JPB2 1677 aa9.88□□□□□ -0.83
NEDD8-203ENST00000524927 FAM155AB1AL88 458 aaPredicted RBP9.88□□□□□ -0.83
NEDD8-203ENST00000524927 F11P03951 625 aa9.88□□□□□ -0.83
NEDD8-203ENST00000524927 ERCC3P19447 782 aa9.88□□□□□ -0.83
NEDD8-203ENST00000524927 PHKA2P46019 1235 aa9.88□□□□□ -0.83
NEDD8-203ENST00000524927 HIRAP54198 1017 aaPredicted RBP9.88□□□□□ -0.83
NEDD8-203ENST00000524927 KIF23Q02241 960 aaPredicted RBP9.88□□□□□ -0.83
NEDD8-203ENST00000524927 USP50Q70EL3 339 aaPredicted RBP9.88□□□□□ -0.83
NEDD8-203ENST00000524927 PHACTR1Q9C0D0 580 aa9.88□□□□□ -0.83
NEDD8-203ENST00000524927 SRP68Q9UHB9 627 aaKnown RBP9.88□□□□□ -0.83
NEDD8-203ENST00000524927 DCTN4Q9UJW0 460 aa9.88□□□□□ -0.83
NEDD8-203ENST00000524927 ASAP1Q9ULH1 1129 aa9.88□□□□□ -0.83
NEDD8-203ENST00000524927 RBBP6Q7Z6E9 1792 aaKnown RBP9.88□□□□□ -0.83
NEDD8-203ENST00000524927 NRXN2Q9P2S2 1712 aa9.87□□□□□ -0.83
NEDD8-203ENST00000524927 KIAA0100Q14667 2235 aaKnown RBP9.87□□□□□ -0.83
NEDD8-203ENST00000524927 CYP27B1O15528 508 aa9.87□□□□□ -0.83
NEDD8-203ENST00000524927 TATP17735 454 aaPredicted RBP9.87□□□□□ -0.83
NEDD8-203ENST00000524927 RBM25P49756 843 aaKnown RBP9.87□□□□□ -0.83
NEDD8-203ENST00000524927 ARHGAP4P98171 946 aa9.87□□□□□ -0.83
NEDD8-203ENST00000524927 ECM1Q16610 540 aa9.87□□□□□ -0.83
NEDD8-203ENST00000524927 C4orf17Q53FE4 359 aa9.87□□□□□ -0.83
NEDD8-203ENST00000524927 ZNF295-AS1Q8N0V1 137 aa9.87□□□□□ -0.83
NEDD8-203ENST00000524927 MYO19Q96H55 970 aa9.87□□□□□ -0.83
NEDD8-203ENST00000524927 TRERF1Q96PN7 1200 aa9.87□□□□□ -0.83
NEDD8-203ENST00000524927 GPAMQ9HCL2 828 aa9.87□□□□□ -0.83
NEDD8-203ENST00000524927 TMOD3Q9NYL9 352 aa9.87□□□□□ -0.83
NEDD8-203ENST00000524927 LRFN2Q9ULH4 789 aa9.87□□□□□ -0.83
NEDD8-203ENST00000524927 AKAP11Q9UKA4 1901 aa9.87□□□□□ -0.83
NEDD8-203ENST00000524927 A0A1W2PPC1 479 aa9.86□□□□□ -0.83
NEDD8-203ENST00000524927 FZD9O00144 591 aa9.86□□□□□ -0.83
NEDD8-203ENST00000524927 NPR3P17342 541 aa9.86□□□□□ -0.83
NEDD8-203ENST00000524927 BRD2P25440 801 aaKnown RBP9.86□□□□□ -0.83
NEDD8-203ENST00000524927 COL8A1P27658 744 aa9.86□□□□□ -0.83
NEDD8-203ENST00000524927 RTN1Q16799 776 aa9.86□□□□□ -0.83
NEDD8-203ENST00000524927 NOM1Q5C9Z4 860 aaKnown RBP9.86□□□□□ -0.83
NEDD8-203ENST00000524927 ALKBH2Q6NS38 261 aa9.86□□□□□ -0.83
NEDD8-203ENST00000524927 DNAJC14Q6Y2X3 702 aaPredicted RBP9.86□□□□□ -0.83
NEDD8-203ENST00000524927 SYNE4Q8N205 404 aa9.86□□□□□ -0.83
NEDD8-203ENST00000524927 ZNF296Q8WUU4 475 aaPredicted RBP9.86□□□□□ -0.83
NEDD8-203ENST00000524927 ZNF622Q969S3 477 aaKnown RBP eCLIP9.86□□□□□ -0.831e-16■□□□□ 9.9
NEDD8-203ENST00000524927 SCN11AQ9UI33 1791 aa9.86□□□□□ -0.83
NEDD8-203ENST00000524927 TTC28Q96AY4 2481 aa9.85□□□□□ -0.83
NEDD8-203ENST00000524927 ANKRD33BA6NCL7 494 aa9.85□□□□□ -0.83
NEDD8-203ENST00000524927 TNFRSF10BO14763 440 aa9.85□□□□□ -0.83
NEDD8-203ENST00000524927 HOXB4P17483 251 aaPredicted RBP9.85□□□□□ -0.83
NEDD8-203ENST00000524927 TXLNAP40222 546 aa9.85□□□□□ -0.83
NEDD8-203ENST00000524927 HUNKP57058 714 aa9.85□□□□□ -0.83
NEDD8-203ENST00000524927 C11orf91Q3C1V1 193 aa9.85□□□□□ -0.83
NEDD8-203ENST00000524927 WDR44Q5JSH3 913 aa9.85□□□□□ -0.83
NEDD8-203ENST00000524927 RGMBQ6NW40 437 aa9.85□□□□□ -0.83
NEDD8-203ENST00000524927 OXCT2Q9BYC2 517 aaPredicted RBP9.85□□□□□ -0.83
NEDD8-203ENST00000524927 PRO3102Q9H379 93 aa9.85□□□□□ -0.83
NEDD8-203ENST00000524927 ATG3Q9NT62 314 aa9.85□□□□□ -0.83
NEDD8-203ENST00000524927 AFDNP55196 1824 aaKnown RBP9.84□□□□□ -0.83
NEDD8-203ENST00000524927 C2CD2LO14523 706 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms