RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 LRRC24Q50LG9 513 aa17.5■□□□□ 0.39
NKX3-1-202ENST00000523261 METTL24Q5JXM2 366 aa17.5■□□□□ 0.39
NKX3-1-202ENST00000523261 SOCS4Q8WXH5 440 aa17.5■□□□□ 0.39
NKX3-1-202ENST00000523261 IDI2Q9BXS1 227 aa17.5■□□□□ 0.39
NKX3-1-202ENST00000523261 RFX7Q2KHR2 1363 aa17.5■□□□□ 0.39
NKX3-1-202ENST00000523261 KIF16BQ96L93 1317 aa17.49■□□□□ 0.39
NKX3-1-202ENST00000523261 PRDX5P30044 214 aa17.49■□□□□ 0.39
NKX3-1-202ENST00000523261 RTP1P59025 263 aa17.49■□□□□ 0.39
NKX3-1-202ENST00000523261 PABPC4Q13310 644 aaKnown RBP eCLIP17.49■□□□□ 0.39
NKX3-1-202ENST00000523261 CCL14Q16627 93 aa17.49■□□□□ 0.39
NKX3-1-202ENST00000523261 USP6NLQ92738 828 aa17.49■□□□□ 0.39
NKX3-1-202ENST00000523261 DDTLA6NHG4 134 aaPredicted RBP17.48■□□□□ 0.39
NKX3-1-202ENST00000523261 HMGCS2P54868 508 aa17.48■□□□□ 0.39
NKX3-1-202ENST00000523261 SPP2Q13103 211 aa17.48■□□□□ 0.39
NKX3-1-202ENST00000523261 KAZALD1Q96I82 304 aa17.48■□□□□ 0.39
NKX3-1-202ENST00000523261 PEX10O60683 326 aa17.47■□□□□ 0.39
NKX3-1-202ENST00000523261 GRIN2CQ14957 1233 aa17.47■□□□□ 0.39
NKX3-1-202ENST00000523261 ZSCAN29Q8IWY8 852 aaPredicted RBP17.47■□□□□ 0.39
NKX3-1-202ENST00000523261 SYNGAP1Q96PV0 1343 aa17.47■□□□□ 0.39
NKX3-1-202ENST00000523261 FGFR2P21802 821 aa17.46■□□□□ 0.39
NKX3-1-202ENST00000523261 ZEB1P37275 1124 aaPredicted RBP17.46■□□□□ 0.39
NKX3-1-202ENST00000523261 ZNF280CQ8ND82 737 aa17.46■□□□□ 0.39
NKX3-1-202ENST00000523261 BADQ92934 168 aa17.46■□□□□ 0.39
NKX3-1-202ENST00000523261 SUCLG2Q96I99 432 aa17.46■□□□□ 0.39
NKX3-1-202ENST00000523261 TXNRD2Q9NNW7 524 aa17.46■□□□□ 0.39
NKX3-1-202ENST00000523261 C9orf78Q9NZ63 289 aaPredicted RBP17.46■□□□□ 0.39
NKX3-1-202ENST00000523261 RLFQ13129 1914 aa17.45■□□□□ 0.38
NKX3-1-202ENST00000523261 PIEZO1Q92508 2521 aa17.45■□□□□ 0.38
NKX3-1-202ENST00000523261 IFIT1P09914 478 aaKnown RBP17.45■□□□□ 0.38
NKX3-1-202ENST00000523261 RGS2P41220 211 aa17.45■□□□□ 0.38
NKX3-1-202ENST00000523261 PDE3AQ14432 1141 aa17.45■□□□□ 0.38
NKX3-1-202ENST00000523261 SH3D19Q5HYK7 790 aa17.45■□□□□ 0.38
NKX3-1-202ENST00000523261 MORN1Q5T089 497 aa17.45■□□□□ 0.38
NKX3-1-202ENST00000523261 ADAMTS19Q8TE59 1207 aa17.45■□□□□ 0.38
NKX3-1-202ENST00000523261 ATXN2LQ8WWM7 1075 aaKnown RBP17.45■□□□□ 0.38
NKX3-1-202ENST00000523261 ATP11BQ9Y2G3 1177 aa17.45■□□□□ 0.38
NKX3-1-202ENST00000523261 LDHBP07195 334 aaKnown RBP17.44■□□□□ 0.38
NKX3-1-202ENST00000523261 MAPK4P31152 587 aa17.44■□□□□ 0.38
NKX3-1-202ENST00000523261 ASB2Q96Q27 587 aa17.44■□□□□ 0.38
NKX3-1-202ENST00000523261 APBA2Q99767 749 aa17.44■□□□□ 0.38
NKX3-1-202ENST00000523261 DDX4Q9NQI0 724 aaKnown RBP17.44■□□□□ 0.38
NKX3-1-202ENST00000523261 DNM1LO00429 736 aa17.43■□□□□ 0.38
NKX3-1-202ENST00000523261 TBC1D12O60347 775 aa17.43■□□□□ 0.38
NKX3-1-202ENST00000523261 PUM3Q15397 648 aaKnown RBP17.43■□□□□ 0.38
NKX3-1-202ENST00000523261 GPRC5AQ8NFJ5 357 aa17.43■□□□□ 0.38
NKX3-1-202ENST00000523261 LPAR1Q92633 364 aa17.43■□□□□ 0.38
NKX3-1-202ENST00000523261 UHRF1Q96T88 793 aaPredicted RBP17.43■□□□□ 0.38
NKX3-1-202ENST00000523261 P2RX7Q99572 595 aaKnown RBP17.43■□□□□ 0.38
NKX3-1-202ENST00000523261 TBC1D2Q9BYX2 928 aa17.43■□□□□ 0.38
NKX3-1-202ENST00000523261 OSBPL5Q9H0X9 879 aaPredicted RBP17.43■□□□□ 0.38
NKX3-1-202ENST00000523261 PORCNQ9H237 461 aa17.43■□□□□ 0.38
NKX3-1-202ENST00000523261 PRDM5Q9NQX1 630 aaPredicted RBP17.43■□□□□ 0.38
NKX3-1-202ENST00000523261 DDX20Q9UHI6 824 aaKnown RBP17.43■□□□□ 0.38
NKX3-1-202ENST00000523261 GAKO14976 1311 aa17.43■□□□□ 0.38
NKX3-1-202ENST00000523261 MYH2Q9UKX2 1941 aa17.43■□□□□ 0.38
NKX3-1-202ENST00000523261 ATAD5Q96QE3 1844 aa17.42■□□□□ 0.38
NKX3-1-202ENST00000523261 FAM196BA6NMK8 535 aa17.42■□□□□ 0.38
NKX3-1-202ENST00000523261 IRX3P78415 501 aaPredicted RBP17.42■□□□□ 0.38
NKX3-1-202ENST00000523261 RABL6Q3YEC7 729 aaPredicted RBP17.42■□□□□ 0.38
NKX3-1-202ENST00000523261 GPR142Q7Z601 462 aa17.42■□□□□ 0.38
NKX3-1-202ENST00000523261 PDLIM7Q9NR12 457 aa17.42■□□□□ 0.38
NKX3-1-202ENST00000523261 THEGQ9P2T0 379 aa17.42■□□□□ 0.38
NKX3-1-202ENST00000523261 ARIH1Q9Y4X5 557 aaPredicted RBP17.42■□□□□ 0.38
NKX3-1-202ENST00000523261 ALDH1L1O75891 902 aa17.41■□□□□ 0.38
NKX3-1-202ENST00000523261 HOXA7P31268 230 aaPredicted RBP17.41■□□□□ 0.38
NKX3-1-202ENST00000523261 HERVK_113P62684 666 aa17.41■□□□□ 0.38
NKX3-1-202ENST00000523261 Q3C1V9 767 aa17.41■□□□□ 0.38
NKX3-1-202ENST00000523261 SLC39A5Q6ZMH5 540 aa17.41■□□□□ 0.38
NKX3-1-202ENST00000523261 BICC1Q9H694 974 aaKnown RBP17.41■□□□□ 0.38
NKX3-1-202ENST00000523261 RBPJLQ9UBG7 517 aa17.41■□□□□ 0.38
NKX3-1-202ENST00000523261 SALL1Q9NSC2 1324 aa17.41■□□□□ 0.38
NKX3-1-202ENST00000523261 TRIM43BA6NCK2 446 aa17.4■□□□□ 0.38
NKX3-1-202ENST00000523261 MSCO60682 206 aa17.4■□□□□ 0.38
NKX3-1-202ENST00000523261 NBPF7P0C2Y1 421 aaPredicted RBP17.4■□□□□ 0.38
NKX3-1-202ENST00000523261 DNAJB2P25686 324 aa17.4■□□□□ 0.38
NKX3-1-202ENST00000523261 PICALMQ13492 652 aa17.4■□□□□ 0.38
NKX3-1-202ENST00000523261 SNX17Q15036 470 aa17.4■□□□□ 0.38
NKX3-1-202ENST00000523261 SH3RF1Q7Z6J0 888 aa17.4■□□□□ 0.38
NKX3-1-202ENST00000523261 PLEKHH3Q7Z736 793 aa17.4■□□□□ 0.38
NKX3-1-202ENST00000523261 KLHDC4Q8TBB5 520 aa17.4■□□□□ 0.38
NKX3-1-202ENST00000523261 TRIM43Q96BQ3 446 aaPredicted RBP17.4■□□□□ 0.38
NKX3-1-202ENST00000523261 RNPC3Q96LT9 517 aaKnown RBP17.4■□□□□ 0.38
NKX3-1-202ENST00000523261 FLRT1Q9NZU1 646 aa17.4■□□□□ 0.38
NKX3-1-202ENST00000523261 USP17L5A8MUK1 530 aa17.39■□□□□ 0.37
NKX3-1-202ENST00000523261 VAMP4O75379 141 aa17.39■□□□□ 0.37
NKX3-1-202ENST00000523261 SLC5A1P13866 664 aa17.39■□□□□ 0.37
NKX3-1-202ENST00000523261 EPHB4P54760 987 aa17.39■□□□□ 0.37
NKX3-1-202ENST00000523261 ERVK-9P63128 1117 aa17.39■□□□□ 0.37
NKX3-1-202ENST00000523261 ERVK-24P63145 666 aa17.39■□□□□ 0.37
NKX3-1-202ENST00000523261 MRPS5P82675 430 aaKnown RBP17.39■□□□□ 0.37
NKX3-1-202ENST00000523261 MAP2K5Q13163 448 aa17.39■□□□□ 0.37
NKX3-1-202ENST00000523261 RRP1BQ14684 758 aaKnown RBP17.39■□□□□ 0.37
NKX3-1-202ENST00000523261 TRIM60Q495X7 471 aa17.39■□□□□ 0.37
NKX3-1-202ENST00000523261 MFSD14CQ5VZR4 134 aa17.39■□□□□ 0.37
NKX3-1-202ENST00000523261 ANKRD44Q8N8A2 993 aa17.39■□□□□ 0.37
NKX3-1-202ENST00000523261 PPM1EQ8WY54 764 aa17.39■□□□□ 0.37
NKX3-1-202ENST00000523261 LPIN2Q92539 896 aa17.39■□□□□ 0.37
NKX3-1-202ENST00000523261 C1QTNF1Q9BXJ1 281 aa17.39■□□□□ 0.37
NKX3-1-202ENST00000523261 ZNF576Q9H609 170 aa17.39■□□□□ 0.37
NKX3-1-202ENST00000523261 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms