RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 FYCO1Q9BQS8 1478 aa10.6□□□□□ -0.71
SDCBP-208ENST00000520228 MAP3K4Q9Y6R4 1608 aa10.59□□□□□ -0.71
SDCBP-208ENST00000520228 GREM1O60565 184 aa10.59□□□□□ -0.71
SDCBP-208ENST00000520228 SEPT6Q14141 434 aa10.59□□□□□ -0.71
SDCBP-208ENST00000520228 ANKRD34AQ69YU3 496 aa10.59□□□□□ -0.71
SDCBP-208ENST00000520228 FBXL19Q6PCT2 694 aa10.59□□□□□ -0.71
SDCBP-208ENST00000520228 TXNRD3Q86VQ6 643 aa10.59□□□□□ -0.71
SDCBP-208ENST00000520228 DZIP1LQ8IYY4 767 aaKnown RBP10.59□□□□□ -0.71
SDCBP-208ENST00000520228 ZNF654Q8IZM8 581 aa10.59□□□□□ -0.71
SDCBP-208ENST00000520228 TGIF2Q9GZN2 237 aa10.59□□□□□ -0.71
SDCBP-208ENST00000520228 CYP4F12Q9HCS2 524 aa10.59□□□□□ -0.71
SDCBP-208ENST00000520228 CCDC18Q5T9S5 1454 aa10.59□□□□□ -0.71
SDCBP-208ENST00000520228 TROQ12816 1431 aaPredicted RBP10.58□□□□□ -0.72
SDCBP-208ENST00000520228 COL17A1Q9UMD9 1497 aaPredicted RBP10.58□□□□□ -0.72
SDCBP-208ENST00000520228 PHLDB1Q86UU1 1377 aa10.58□□□□□ -0.72
SDCBP-208ENST00000520228 FAM221AA4D161 298 aa10.58□□□□□ -0.72
SDCBP-208ENST00000520228 GDF11O95390 407 aa10.58□□□□□ -0.72
SDCBP-208ENST00000520228 ZC3H12AQ5D1E8 599 aaKnown RBP10.58□□□□□ -0.72
SDCBP-208ENST00000520228 TMEM151AQ8N4L1 468 aa10.58□□□□□ -0.72
SDCBP-208ENST00000520228 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.58□□□□□ -0.72
SDCBP-208ENST00000520228 PCF11O94913 1555 aaKnown RBP10.57□□□□□ -0.72
SDCBP-208ENST00000520228 FAM160A1Q05DH4 1040 aa10.57□□□□□ -0.72
SDCBP-208ENST00000520228 SOX4Q06945 474 aaPredicted RBP10.57□□□□□ -0.72
SDCBP-208ENST00000520228 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.57□□□□□ -0.72
SDCBP-208ENST00000520228 BNC2Q6ZN30 1099 aaPredicted RBP10.57□□□□□ -0.72
SDCBP-208ENST00000520228 ZNF296Q8WUU4 475 aaPredicted RBP10.57□□□□□ -0.72
SDCBP-208ENST00000520228 GATAD2BQ8WXI9 593 aa10.57□□□□□ -0.72
SDCBP-208ENST00000520228 MEGF10Q96KG7 1140 aa10.57□□□□□ -0.72
SDCBP-208ENST00000520228 UBL7Q96S82 380 aaPredicted RBP10.57□□□□□ -0.72
SDCBP-208ENST00000520228 SSBP4Q9BWG4 385 aaPredicted RBP10.57□□□□□ -0.72
SDCBP-208ENST00000520228 GSX1Q9H4S2 264 aaPredicted RBP10.57□□□□□ -0.72
SDCBP-208ENST00000520228 RAD18Q9NS91 495 aa10.57□□□□□ -0.72
SDCBP-208ENST00000520228 PPP1R9AQ9ULJ8 1098 aa10.57□□□□□ -0.72
SDCBP-208ENST00000520228 KDM6BO15054 1643 aa10.56□□□□□ -0.72
SDCBP-208ENST00000520228 ABCA9Q8IUA7 1624 aa10.56□□□□□ -0.72
SDCBP-208ENST00000520228 TSPOAP1O95153 1857 aa10.56□□□□□ -0.72
SDCBP-208ENST00000520228 TMPRSS2O15393 492 aa10.56□□□□□ -0.72
SDCBP-208ENST00000520228 CILPO75339 1184 aa10.56□□□□□ -0.72
SDCBP-208ENST00000520228 SLFN14P0C7P3 912 aa10.56□□□□□ -0.72
SDCBP-208ENST00000520228 ADH5P11766 374 aa10.56□□□□□ -0.72
SDCBP-208ENST00000520228 DRD2P14416 443 aa10.56□□□□□ -0.72
SDCBP-208ENST00000520228 LMNB1P20700 586 aa10.56□□□□□ -0.72
SDCBP-208ENST00000520228 ERCC5P28715 1186 aaPredicted RBP10.56□□□□□ -0.72
SDCBP-208ENST00000520228 HNRNPUQ00839 825 aaKnown RBP eCLIP10.56□□□□□ -0.72
SDCBP-208ENST00000520228 PLA2G4EQ3MJ16 856 aa10.56□□□□□ -0.72
SDCBP-208ENST00000520228 GOLM1Q8NBJ4 401 aa10.56□□□□□ -0.72
SDCBP-208ENST00000520228 ACSBG1Q96GR2 724 aa10.56□□□□□ -0.72
SDCBP-208ENST00000520228 FAM46AQ96IP4 442 aaKnown RBP10.56□□□□□ -0.72
SDCBP-208ENST00000520228 CEP41Q9BYV8 373 aa10.56□□□□□ -0.72
SDCBP-208ENST00000520228 CRIM1Q9NZV1 1036 aa10.56□□□□□ -0.72
SDCBP-208ENST00000520228 PCDHA4Q9UN74 947 aa10.56□□□□□ -0.72
SDCBP-208ENST00000520228 CFAP43Q8NDM7 1665 aa10.55□□□□□ -0.72
SDCBP-208ENST00000520228 F13A1P00488 732 aa10.55□□□□□ -0.72
SDCBP-208ENST00000520228 PREPP48147 710 aa10.55□□□□□ -0.72
SDCBP-208ENST00000520228 RING1Q06587 406 aa10.55□□□□□ -0.72
SDCBP-208ENST00000520228 AKAP4Q5JQC9 854 aa10.55□□□□□ -0.72
SDCBP-208ENST00000520228 SNAP47Q5SQN1 464 aa10.55□□□□□ -0.72
SDCBP-208ENST00000520228 EFCAB2Q5VUJ9 269 aa10.55□□□□□ -0.72
SDCBP-208ENST00000520228 FDX2Q6P4F2 183 aa10.55□□□□□ -0.72
SDCBP-208ENST00000520228 FAM196AQ6ZSG2 479 aa10.55□□□□□ -0.72
SDCBP-208ENST00000520228 C2CD4AQ8NCU7 369 aaPredicted RBP10.55□□□□□ -0.72
SDCBP-208ENST00000520228 SUPT16HQ9Y5B9 1047 aaKnown RBP10.55□□□□□ -0.72
SDCBP-208ENST00000520228 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.54□□□□□ -0.72
SDCBP-208ENST00000520228 PPRC1Q5VV67 1664 aaKnown RBP10.54□□□□□ -0.72
SDCBP-208ENST00000520228 PLCH2O75038 1416 aa10.54□□□□□ -0.72
SDCBP-208ENST00000520228 RAPGEF3O95398 923 aa10.54□□□□□ -0.72
SDCBP-208ENST00000520228 GLB1P16278 677 aa10.54□□□□□ -0.72
SDCBP-208ENST00000520228 CDK8P49336 464 aa10.54□□□□□ -0.72
SDCBP-208ENST00000520228 INPP5AQ14642 412 aa10.54□□□□□ -0.72
SDCBP-208ENST00000520228 C12orf50Q8NA57 414 aaPredicted RBP10.54□□□□□ -0.72
SDCBP-208ENST00000520228 JARID2Q92833 1246 aaPredicted RBP10.54□□□□□ -0.72
SDCBP-208ENST00000520228 EAF1Q96JC9 268 aaPredicted RBP10.54□□□□□ -0.72
SDCBP-208ENST00000520228 SPON2Q9BUD6 331 aa10.54□□□□□ -0.72
SDCBP-208ENST00000520228 LRRC3Q9BY71 257 aa10.54□□□□□ -0.72
SDCBP-208ENST00000520228 NEO1Q92859 1461 aa10.54□□□□□ -0.72
SDCBP-208ENST00000520228 ROBO2Q9HCK4 1378 aa10.53□□□□□ -0.72
SDCBP-208ENST00000520228 VPS8Q8N3P4 1428 aa10.53□□□□□ -0.72
SDCBP-208ENST00000520228 GFRA2O00451 464 aa10.53□□□□□ -0.72
SDCBP-208ENST00000520228 ID3Q02535 119 aa10.53□□□□□ -0.72
SDCBP-208ENST00000520228 RPL6Q02878 288 aaKnown RBP10.53□□□□□ -0.72
SDCBP-208ENST00000520228 LRFN4Q6PJG9 635 aa10.53□□□□□ -0.72
SDCBP-208ENST00000520228 KIAA0825Q8IV33 1275 aa10.53□□□□□ -0.72
SDCBP-208ENST00000520228 NT5C1AQ9BXI3 368 aa10.53□□□□□ -0.72
SDCBP-208ENST00000520228 ACBD3Q9H3P7 528 aa10.53□□□□□ -0.72
SDCBP-208ENST00000520228 SNCAIPQ9Y6H5 919 aa10.53□□□□□ -0.72
SDCBP-208ENST00000520228 ARAP3Q8WWN8 1544 aa10.53□□□□□ -0.72
SDCBP-208ENST00000520228 MTUS2Q5JR59 1369 aa10.52□□□□□ -0.72
SDCBP-208ENST00000520228 CRKP46108 304 aa10.52□□□□□ -0.73
SDCBP-208ENST00000520228 ERVK-24P63145 666 aa10.52□□□□□ -0.73
SDCBP-208ENST00000520228 UVSSAQ2YD98 709 aa10.52□□□□□ -0.73
SDCBP-208ENST00000520228 CYFIP1Q7L576 1253 aa10.52□□□□□ -0.73
SDCBP-208ENST00000520228 PLPPR2Q96GM1 343 aa10.52□□□□□ -0.73
SDCBP-208ENST00000520228 FANCD2OSQ96PS1 177 aa10.52□□□□□ -0.73
SDCBP-208ENST00000520228 DISC1Q9NRI5 854 aa10.52□□□□□ -0.73
SDCBP-208ENST00000520228 FANCAO15360 1455 aa10.52□□□□□ -0.73
SDCBP-208ENST00000520228 AKNAQ7Z591 1439 aa10.51□□□□□ -0.73
SDCBP-208ENST00000520228 GATA4P43694 442 aa10.51□□□□□ -0.73
SDCBP-208ENST00000520228 MPP2Q14168 576 aa10.51□□□□□ -0.73
SDCBP-208ENST00000520228 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.51□□□□□ -0.73
SDCBP-208ENST00000520228 ARMC10Q8N2F6 343 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms