RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 SPATA32Q96LK8 384 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 C8orf37Q96NL8 207 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 ALPK1Q96QP1 1244 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 CDK5RAP1Q96SZ6 601 aaKnown RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 POP1Q99575 1024 aaKnown RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 GPR20Q99678 358 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 POLR3GLQ9BT43 218 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 MKNK1Q9BUB5 465 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 CHMP4AQ9BY43 222 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZFYVE28Q9HCC9 887 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 PRDM10Q9NQV6 1147 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 CRIM1Q9NZV1 1036 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZFATQ9P243 1243 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 SRRDQ9UH36 339 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 ADGRE2Q9UHX3 823 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 SALL4Q9UJQ4 1053 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 NAGPAQ9UK23 515 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 CNOT6Q9ULM6 557 aaKnown RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 SOX13Q9UN79 622 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 GNEQ9Y223 722 aaKnown RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 FAN1Q9Y2M0 1017 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 IRAK3Q9Y616 596 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 SNCAIPQ9Y6H5 919 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 IVNS1ABPQ9Y6Y0 642 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 ARID4BQ4LE39 1312 aaPredicted RBP0.84□□□□□ -2.28
RNU4-54P-201ENST00000516428 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 TRBV23OR9-2A0A075B6M9 112 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 PRR19A6NJB7 356 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 UNCXA6NJT0 531 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 HRKO00198 91 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 SOX1O00570 391 aaPredicted RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 PRRG2O14669 202 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 PEX10O60683 326 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 GPR37L1O60883 481 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 LRIG2O94898 1065 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 TRIM37O94972 964 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 CLSTN1O94985 981 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 STAU1O95793 577 aaKnown RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 PDGFAP04085 211 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 MPOP05164 745 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF16P17020 682 aaPredicted RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 ITIH2P19823 946 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 NME2P22392 152 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 ARNTP27540 789 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 NOP2P46087 812 aaKnown RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZC3H6P61129 1189 aaKnown RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 ATP11AP98196 1134 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 PLCB3Q01970 1234 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 KIAA2012Q0VF49 1180 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 LAPTM5Q13571 262 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 NFIXQ14938 502 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 SF3A1Q15459 793 aaKnown RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF827Q17R98 1081 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 MSMPQ1L6U9 139 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF568Q3ZCX4 644 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF326Q5BKZ1 582 aaKnown RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 CFAP70Q5T0N1 1121 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 SH3PXD2AQ5TCZ1 1133 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 CWF19L1Q69YN2 538 aaKnown RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 LLGL2Q6P1M3 1020 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 BORAQ6PGQ7 559 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 TTLL7Q6ZT98 887 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 CBLL1Q75N03 491 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF765Q7L2R6 523 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 TTC6Q86TZ1 520 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 USP48Q86UV5 1035 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 TXNDC2Q86VQ3 553 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 AMIGO3Q86WK7 504 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 JAMLQ86YT9 394 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 CCNJLQ8IV13 435 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 HID1Q8IV36 788 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 GALNT12Q8IXK2 581 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 ETFBKMTQ8IXQ9 262 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 C2CD4AQ8NCU7 369 aaPredicted RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 GALNT11Q8NCW6 608 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 GLIS3Q8NEA6 775 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 PDZD8Q8NEN9 1154 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 CHST13Q8NET6 341 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 GTF3C2Q8WUA4 911 aaPredicted RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 CCDC74AQ96AQ1 378 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 DDX11Q96FC9 970 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 PRIMPOLQ96LW4 560 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZKSCAN3Q9BRR0 538 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 SEMA4AQ9H3S1 761 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 SEMA6CQ9H3T2 930 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 NSUN3Q9H649 340 aaKnown RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 ACSS3Q9H6R3 686 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 NGRNQ9NPE2 291 aaKnown RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 PAK6Q9NQU5 681 aaPredicted RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 SH2B1Q9NRF2 756 aaPredicted RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 USP40Q9NVE5 1235 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 KIAA1522Q9P206 1035 aaPredicted RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 KANSL3Q9P2N6 904 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 BIN2Q9UBW5 565 aaPredicted RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZC3H7BQ9UGR2 993 aaKnown RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 TMEM59LQ9UK28 342 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 DBR1Q9UK59 544 aaKnown RBP0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 NUDT5Q9UKK9 219 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 POLIQ9UNA4 740 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 KIAA1024Q9UPX6 916 aa0.83□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms