RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 SLC12A7Q9Y666 1083 aa18.77■□□□□ 0.6
NUP54-214ENST00000514307 DLEC1Q9Y238 1755 aa18.77■□□□□ 0.6
NUP54-214ENST00000514307 MYO5AQ9Y4I1 1855 aaKnown RBP18.76■□□□□ 0.59
NUP54-214ENST00000514307 CYP2D6P10635 497 aa18.76■□□□□ 0.59
NUP54-214ENST00000514307 HMGN5P82970 282 aaKnown RBP18.76■□□□□ 0.59
NUP54-214ENST00000514307 COL9A3Q14050 684 aaPredicted RBP18.76■□□□□ 0.59
NUP54-214ENST00000514307 MTMR14Q8NCE2 650 aa18.76■□□□□ 0.59
NUP54-214ENST00000514307 ZSCAN10Q96SZ4 725 aaPredicted RBP18.76■□□□□ 0.59
NUP54-214ENST00000514307 MYH13Q9UKX3 1938 aa18.75■□□□□ 0.59
NUP54-214ENST00000514307 CCDC196A0A1B0GTZ2 297 aa18.75■□□□□ 0.59
NUP54-214ENST00000514307 TSPY2A6NKD2 308 aa18.75■□□□□ 0.59
NUP54-214ENST00000514307 MYO1BO43795 1136 aa18.75■□□□□ 0.59
NUP54-214ENST00000514307 ENTPD3O75355 529 aa18.75■□□□□ 0.59
NUP54-214ENST00000514307 WDHD1O75717 1129 aaPredicted RBP18.75■□□□□ 0.59
NUP54-214ENST00000514307 LARGE1O95461 756 aa18.75■□□□□ 0.59
NUP54-214ENST00000514307 RCAN1P53805 252 aa18.75■□□□□ 0.59
NUP54-214ENST00000514307 PICALMQ13492 652 aa18.75■□□□□ 0.59
NUP54-214ENST00000514307 FOXP4Q8IVH2 680 aaPredicted RBP18.75■□□□□ 0.59
NUP54-214ENST00000514307 SYT17Q9BSW7 474 aa18.75■□□□□ 0.59
NUP54-214ENST00000514307 TCP11L1Q9NUJ3 509 aa18.75■□□□□ 0.59
NUP54-214ENST00000514307 SWAP70Q9UH65 585 aa18.75■□□□□ 0.59
NUP54-214ENST00000514307 TACC3Q9Y6A5 838 aa18.75■□□□□ 0.59
NUP54-214ENST00000514307 CCDC88AQ3V6T2 1871 aa18.75■□□□□ 0.59
NUP54-214ENST00000514307 WDR33Q9C0J8 1336 aaKnown RBP18.74■□□□□ 0.59
NUP54-214ENST00000514307 CPLX1O14810 134 aa18.74■□□□□ 0.59
NUP54-214ENST00000514307 ZBTB43O43298 467 aa18.74■□□□□ 0.59
NUP54-214ENST00000514307 CDKL5O76039 1030 aa18.74■□□□□ 0.59
NUP54-214ENST00000514307 CALM1P0DP23 149 aa18.74■□□□□ 0.59
NUP54-214ENST00000514307 CALM2P0DP24 149 aa18.74■□□□□ 0.59
NUP54-214ENST00000514307 CALM3P0DP25 149 aa18.74■□□□□ 0.59
NUP54-214ENST00000514307 GJB2P29033 226 aa18.74■□□□□ 0.59
NUP54-214ENST00000514307 CDK8P49336 464 aa18.74■□□□□ 0.59
NUP54-214ENST00000514307 PLCD1P51178 756 aa18.74■□□□□ 0.59
NUP54-214ENST00000514307 TFAP4Q01664 338 aa18.74■□□□□ 0.59
NUP54-214ENST00000514307 RAB3GAP1Q15042 981 aa18.74■□□□□ 0.59
NUP54-214ENST00000514307 C16orf86Q6ZW13 317 aa18.74■□□□□ 0.59
NUP54-214ENST00000514307 DPF2Q92785 391 aa18.74■□□□□ 0.59
NUP54-214ENST00000514307 LY9Q9HBG7 655 aa18.74■□□□□ 0.59
NUP54-214ENST00000514307 BRPF3Q9ULD4 1205 aa18.74■□□□□ 0.59
NUP54-214ENST00000514307 MAST2Q6P0Q8 1798 aa18.73■□□□□ 0.59
NUP54-214ENST00000514307 FZD9O00144 591 aa18.73■□□□□ 0.59
NUP54-214ENST00000514307 PRDM1O75626 825 aa18.73■□□□□ 0.59
NUP54-214ENST00000514307 LMNB1P20700 586 aa18.73■□□□□ 0.59
NUP54-214ENST00000514307 LARP1BQ659C4 914 aaKnown RBP18.73■□□□□ 0.59
NUP54-214ENST00000514307 DGKHQ86XP1 1220 aa18.73■□□□□ 0.59
NUP54-214ENST00000514307 FAM184AQ8NB25 1140 aa18.73■□□□□ 0.59
NUP54-214ENST00000514307 PRMT6Q96LA8 375 aaPredicted RBP18.73■□□□□ 0.59
NUP54-214ENST00000514307 GBP4Q96PP9 640 aa18.73■□□□□ 0.59
NUP54-214ENST00000514307 OSBPL5Q9H0X9 879 aaPredicted RBP18.73■□□□□ 0.59
NUP54-214ENST00000514307 PI4KBQ9UBF8 816 aa18.73■□□□□ 0.59
NUP54-214ENST00000514307 ROBO3Q96MS0 1386 aa18.72■□□□□ 0.59
NUP54-214ENST00000514307 GOLGA8BA8MQT2 603 aa18.72■□□□□ 0.59
NUP54-214ENST00000514307 TSPY3P0CV98 308 aa18.72■□□□□ 0.59
NUP54-214ENST00000514307 TSPY8P0CW00 308 aa18.72■□□□□ 0.59
NUP54-214ENST00000514307 CCT2P78371 535 aaKnown RBP18.72■□□□□ 0.59
NUP54-214ENST00000514307 SCRN1Q12765 414 aa18.72■□□□□ 0.59
NUP54-214ENST00000514307 PPP4R3BQ5MIZ7 849 aa18.72■□□□□ 0.59
NUP54-214ENST00000514307 IFIT1BQ5T764 474 aaKnown RBP18.72■□□□□ 0.59
NUP54-214ENST00000514307 FKBP1CQ5VVH2 108 aa18.72■□□□□ 0.59
NUP54-214ENST00000514307 CATIPQ7Z7H3 387 aa18.72■□□□□ 0.59
NUP54-214ENST00000514307 ANKS1AQ92625 1134 aa18.72■□□□□ 0.59
NUP54-214ENST00000514307 DYNLL2Q96FJ2 89 aa18.72■□□□□ 0.59
NUP54-214ENST00000514307 TRIM34Q9BYJ4 488 aa18.72■□□□□ 0.59
NUP54-214ENST00000514307 TDRD3Q9H7E2 651 aaKnown RBP18.72■□□□□ 0.59
NUP54-214ENST00000514307 GPHNQ9NQX3 736 aaPredicted RBP18.72■□□□□ 0.59
NUP54-214ENST00000514307 SERPINB13Q9UIV8 391 aa18.72■□□□□ 0.59
NUP54-214ENST00000514307 ZBTB12Q9Y330 459 aaPredicted RBP18.72■□□□□ 0.59
NUP54-214ENST00000514307 SPDYE2BA6NHP3 402 aa18.71■□□□□ 0.59
NUP54-214ENST00000514307 SPDYE6P0CI01 402 aa18.71■□□□□ 0.59
NUP54-214ENST00000514307 METAP2P50579 478 aaKnown RBP eCLIP18.71■□□□□ 0.59
NUP54-214ENST00000514307 APOA5Q6Q788 366 aa18.71■□□□□ 0.59
NUP54-214ENST00000514307 ZSCAN29Q8IWY8 852 aaPredicted RBP18.71■□□□□ 0.59
NUP54-214ENST00000514307 CCDC17Q96LX7 622 aa18.71■□□□□ 0.59
NUP54-214ENST00000514307 ZKSCAN3Q9BRR0 538 aa18.71■□□□□ 0.59
NUP54-214ENST00000514307 EHD4Q9H223 541 aa18.71■□□□□ 0.59
NUP54-214ENST00000514307 SEC23AQ15436 765 aa18.7■□□□□ 0.58
NUP54-214ENST00000514307 FAM47AQ5JRC9 791 aa18.7■□□□□ 0.58
NUP54-214ENST00000514307 SMARCC2Q8TAQ2 1214 aa18.7■□□□□ 0.58
NUP54-214ENST00000514307 DDX4Q9NQI0 724 aaKnown RBP18.7■□□□□ 0.58
NUP54-214ENST00000514307 ATP6V1DQ9Y5K8 247 aa18.7■□□□□ 0.58
NUP54-214ENST00000514307 TNKSO95271 1327 aa18.7■□□□□ 0.58
NUP54-214ENST00000514307 GOLGA8AA7E2F4 631 aa18.69■□□□□ 0.58
NUP54-214ENST00000514307 H7C1D1 291 aa18.69■□□□□ 0.58
NUP54-214ENST00000514307 STX6O43752 255 aa18.69■□□□□ 0.58
NUP54-214ENST00000514307 BRD1O95696 1058 aa18.69■□□□□ 0.58
NUP54-214ENST00000514307 RASA1P20936 1047 aa18.69■□□□□ 0.58
NUP54-214ENST00000514307 PTMSP20962 102 aa18.69■□□□□ 0.58
NUP54-214ENST00000514307 SYT1P21579 422 aa18.69■□□□□ 0.58
NUP54-214ENST00000514307 ZNF280AP59817 542 aaPredicted RBP18.69■□□□□ 0.58
NUP54-214ENST00000514307 RASSF7Q02833 373 aa18.69■□□□□ 0.58
NUP54-214ENST00000514307 CRACR2BQ8N4Y2 399 aaPredicted RBP18.69■□□□□ 0.58
NUP54-214ENST00000514307 ENAHQ8N8S7 591 aaPredicted RBP18.69■□□□□ 0.58
NUP54-214ENST00000514307 NEDD1Q8NHV4 660 aa18.69■□□□□ 0.58
NUP54-214ENST00000514307 TNPO1Q92973 898 aaKnown RBP18.69■□□□□ 0.58
NUP54-214ENST00000514307 ZNF70Q9UC06 446 aaPredicted RBP18.69■□□□□ 0.58
NUP54-214ENST00000514307 HPS5Q9UPZ3 1129 aa18.69■□□□□ 0.58
NUP54-214ENST00000514307 GJA3Q9Y6H8 435 aa18.69■□□□□ 0.58
NUP54-214ENST00000514307 GOLGA6L22H0YM25 854 aa18.68■□□□□ 0.58
NUP54-214ENST00000514307 TNNI2P48788 182 aa18.68■□□□□ 0.58
NUP54-214ENST00000514307 TCP10Q12799 353 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 121.4 ms