RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 SPDYE5A6NIY4 337 aa24.29■■□□□ 1.48
USP53-208ENST00000514305 WDHD1O75717 1129 aaPredicted RBP24.29■■□□□ 1.48
USP53-208ENST00000514305 RGS3P49796 1198 aa24.29■■□□□ 1.48
USP53-208ENST00000514305 OTOP1Q7RTM1 612 aa24.29■■□□□ 1.48
USP53-208ENST00000514305 ERO1BQ86YB8 467 aa24.29■■□□□ 1.48
USP53-208ENST00000514305 RILPL2Q969X0 211 aa24.29■■□□□ 1.48
USP53-208ENST00000514305 FAM163AQ96GL9 167 aaPredicted RBP24.29■■□□□ 1.48
USP53-208ENST00000514305 FSD1Q9BTV5 496 aa24.29■■□□□ 1.48
USP53-208ENST00000514305 ZNF341Q9BYN7 854 aa24.29■■□□□ 1.48
USP53-208ENST00000514305 PIH1D3Q9NQM4 214 aaKnown RBP24.29■■□□□ 1.48
USP53-208ENST00000514305 TNRC18O15417 2968 aaPredicted RBP24.29■■□□□ 1.48
USP53-208ENST00000514305 BAG3O95817 575 aa24.28■■□□□ 1.48
USP53-208ENST00000514305 SP3Q02447 781 aa24.28■■□□□ 1.48
USP53-208ENST00000514305 MECOMQ03112 1051 aa24.28■■□□□ 1.48
USP53-208ENST00000514305 TAF1CQ15572 869 aaPredicted RBP24.28■■□□□ 1.48
USP53-208ENST00000514305 TTC22Q5TAA0 569 aa24.28■■□□□ 1.48
USP53-208ENST00000514305 CDC42EP5Q6NZY7 148 aa24.28■■□□□ 1.48
USP53-208ENST00000514305 BRI3BPQ8WY22 251 aa24.28■■□□□ 1.48
USP53-208ENST00000514305 ZKSCAN4Q969J2 545 aaPredicted RBP24.28■■□□□ 1.48
USP53-208ENST00000514305 NSUN4Q96CB9 384 aaKnown RBP24.28■■□□□ 1.48
USP53-208ENST00000514305 ANTXR1Q9H6X2 564 aa24.28■■□□□ 1.48
USP53-208ENST00000514305 SNCAIPQ9Y6H5 919 aa24.28■■□□□ 1.48
USP53-208ENST00000514305 NDUFB9Q9Y6M9 179 aa24.28■■□□□ 1.48
USP53-208ENST00000514305 HIP1O00291 1037 aa24.27■■□□□ 1.48
USP53-208ENST00000514305 MAP4K4O95819 1239 aaPredicted RBP24.27■■□□□ 1.48
USP53-208ENST00000514305 TCP10Q12799 353 aa24.27■■□□□ 1.48
USP53-208ENST00000514305 SLC9C2Q5TAH2 1124 aa24.27■■□□□ 1.48
USP53-208ENST00000514305 CD99L2Q8TCZ2 262 aa24.27■■□□□ 1.48
USP53-208ENST00000514305 ZFYVE28Q9HCC9 887 aa24.27■■□□□ 1.48
USP53-208ENST00000514305 CETPP11597 493 aa24.26■■□□□ 1.47
USP53-208ENST00000514305 PLCG2P16885 1265 aa24.26■■□□□ 1.47
USP53-208ENST00000514305 MIGA2Q7L4E1 593 aa24.26■■□□□ 1.47
USP53-208ENST00000514305 USP40Q9NVE5 1235 aa24.26■■□□□ 1.47
USP53-208ENST00000514305 DOCK2Q92608 1830 aa24.26■■□□□ 1.47
USP53-208ENST00000514305 CYP7A1P22680 504 aa24.25■■□□□ 1.47
USP53-208ENST00000514305 SNAPC2Q13487 334 aa24.25■■□□□ 1.47
USP53-208ENST00000514305 MAGEB6Q8N7X4 407 aa24.25■■□□□ 1.47
USP53-208ENST00000514305 EFCC1Q9HA90 598 aa24.25■■□□□ 1.47
USP53-208ENST00000514305 PPIL2Q13356 520 aa24.24■■□□□ 1.47
USP53-208ENST00000514305 ARHGEF6Q15052 776 aa24.24■■□□□ 1.47
USP53-208ENST00000514305 UBE3CQ15386 1083 aa24.24■■□□□ 1.47
USP53-208ENST00000514305 EDC3Q96F86 508 aaKnown RBP24.24■■□□□ 1.47
USP53-208ENST00000514305 MROH7-TTC4A0A0A0MT08 1334 aa24.24■■□□□ 1.47
USP53-208ENST00000514305 IRF6O14896 467 aa24.23■■□□□ 1.47
USP53-208ENST00000514305 CD44P16070 742 aaKnown RBP24.23■■□□□ 1.47
USP53-208ENST00000514305 PPATQ06203 517 aa24.23■■□□□ 1.47
USP53-208ENST00000514305 NFIAQ12857 509 aa24.23■■□□□ 1.47
USP53-208ENST00000514305 FAM43AQ8N2R8 423 aa24.23■■□□□ 1.47
USP53-208ENST00000514305 PDE4DIPQ5VU43 2346 aa24.22■■□□□ 1.47
USP53-208ENST00000514305 RFX7Q2KHR2 1363 aa24.22■■□□□ 1.47
USP53-208ENST00000514305 GAKO14976 1311 aa24.22■■□□□ 1.47
USP53-208ENST00000514305 RNF113AO15541 343 aaKnown RBP24.22■■□□□ 1.47
USP53-208ENST00000514305 PDE6AP16499 860 aa24.22■■□□□ 1.47
USP53-208ENST00000514305 ADD2P35612 726 aa24.22■■□□□ 1.47
USP53-208ENST00000514305 BMP2KLQ5H9B9 411 aa24.22■■□□□ 1.47
USP53-208ENST00000514305 ZCCHC17Q9NP64 241 aaKnown RBP24.22■■□□□ 1.47
USP53-208ENST00000514305 PTPN22Q9Y2R2 807 aa24.22■■□□□ 1.47
USP53-208ENST00000514305 ZNF532Q9HCE3 1301 aa24.21■■□□□ 1.47
USP53-208ENST00000514305 INPP5BP32019 993 aa24.21■■□□□ 1.47
USP53-208ENST00000514305 FAM198AQ9UFP1 575 aa24.21■■□□□ 1.47
USP53-208ENST00000514305 GPR75-ASB3A0A0A6YYF3 556 aa24.2■■□□□ 1.46
USP53-208ENST00000514305 BTBD19C9JJ37 291 aa24.19■■□□□ 1.46
USP53-208ENST00000514305 SDSP20132 328 aa24.19■■□□□ 1.46
USP53-208ENST00000514305 BTDP43251 543 aa24.19■■□□□ 1.46
USP53-208ENST00000514305 PPP4CP60510 307 aa24.19■■□□□ 1.46
USP53-208ENST00000514305 CASC1Q6TDU7 716 aa24.19■■□□□ 1.46
USP53-208ENST00000514305 APPBP2Q92624 585 aa24.19■■□□□ 1.46
USP53-208ENST00000514305 DIAPH3Q9NSV4 1193 aa24.19■■□□□ 1.46
USP53-208ENST00000514305 ZNF112Q9UJU3 913 aa24.19■■□□□ 1.46
USP53-208ENST00000514305 MAGEB6P1A0A0J9YX57 407 aa24.18■■□□□ 1.46
USP53-208ENST00000514305 ENTPD3O75355 529 aa24.18■■□□□ 1.46
USP53-208ENST00000514305 GSPT1P15170 499 aaKnown RBP24.18■■□□□ 1.46
USP53-208ENST00000514305 MFAP1P55081 439 aaKnown RBP24.18■■□□□ 1.46
USP53-208ENST00000514305 ZSCAN29Q8IWY8 852 aaPredicted RBP24.18■■□□□ 1.46
USP53-208ENST00000514305 RUFY2Q8WXA3 655 aa24.18■■□□□ 1.46
USP53-208ENST00000514305 IDI2Q9BXS1 227 aa24.18■■□□□ 1.46
USP53-208ENST00000514305 RBBP6Q7Z6E9 1792 aaKnown RBP24.17■■□□□ 1.46
USP53-208ENST00000514305 TLR2O60603 784 aa24.17■■□□□ 1.46
USP53-208ENST00000514305 KIF22Q14807 665 aa24.17■■□□□ 1.46
USP53-208ENST00000514305 HTTP42858 3142 aa24.17■■□□□ 1.46
USP53-208ENST00000514305 NOL9Q5SY16 702 aaKnown RBP24.16■■□□□ 1.46
USP53-208ENST00000514305 HELLSQ9NRZ9 838 aa24.16■■□□□ 1.46
USP53-208ENST00000514305 AATFQ9NY61 560 aaKnown RBP eCLIP24.16■■□□□ 1.46
USP53-208ENST00000514305 TCRBV5S4A2TA0A5A2 114 aa24.15■■□□□ 1.46
USP53-208ENST00000514305 GABBR2O75899 941 aa24.15■■□□□ 1.46
USP53-208ENST00000514305 ZFPM1Q8IX07 1006 aa24.15■■□□□ 1.46
USP53-208ENST00000514305 DDRGK1Q96HY6 314 aa24.15■■□□□ 1.46
USP53-208ENST00000514305 MAST2Q6P0Q8 1798 aa24.15■■□□□ 1.46
USP53-208ENST00000514305 GNAT2P19087 354 aa24.14■■□□□ 1.45
USP53-208ENST00000514305 PICALMQ13492 652 aa24.14■■□□□ 1.45
USP53-208ENST00000514305 ANKRD23Q86SG2 305 aa24.14■■□□□ 1.45
USP53-208ENST00000514305 ZNF384Q8TF68 577 aa24.14■■□□□ 1.45
USP53-208ENST00000514305 CRNKL1Q9BZJ0 848 aaKnown RBP24.14■■□□□ 1.45
USP53-208ENST00000514305 KCNH4Q9UQ05 1017 aa24.14■■□□□ 1.45
USP53-208ENST00000514305 ZMYM1Q5SVZ6 1142 aa24.13■■□□□ 1.45
USP53-208ENST00000514305 TEX11Q8IYF3 940 aa24.13■■□□□ 1.45
USP53-208ENST00000514305 MIGA1Q8NAN2 632 aa24.13■■□□□ 1.45
USP53-208ENST00000514305 ARMC5Q96C12 935 aa24.13■■□□□ 1.45
USP53-208ENST00000514305 PICK1Q9NRD5 415 aa24.13■■□□□ 1.45
USP53-208ENST00000514305 DOCK1Q14185 1865 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms