RNA–Protein interactions for RNA: ENST00000513139.1

SPCS3-204, Transcript of signal peptidase complex subunit 3, humanhuman

TSL 2

Gene SPCS3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3-204ENST00000513139 TBC1D12O60347 775 aa17.35■□□□□ 0.37
SPCS3-204ENST00000513139 ATG9AQ7Z3C6 839 aa17.35■□□□□ 0.37
SPCS3-204ENST00000513139 SLF2Q8IX21 1173 aa17.35■□□□□ 0.37
SPCS3-204ENST00000513139 FAM163AQ96GL9 167 aaPredicted RBP17.35■□□□□ 0.37
SPCS3-204ENST00000513139 GJD2Q9UKL4 321 aa17.35■□□□□ 0.37
SPCS3-204ENST00000513139 ZMYND8Q9ULU4 1186 aaPredicted RBP17.35■□□□□ 0.37
SPCS3-204ENST00000513139 PTPRCP08575 1304 aa17.35■□□□□ 0.37
SPCS3-204ENST00000513139 DDTLA6NHG4 134 aaPredicted RBP17.34■□□□□ 0.37
SPCS3-204ENST00000513139 MAGEA10P43363 369 aaPredicted RBP17.34■□□□□ 0.37
SPCS3-204ENST00000513139 PABPC4Q13310 644 aaKnown RBP eCLIP17.34■□□□□ 0.371e-22■■■■■ 28.9
SPCS3-204ENST00000513139 ATP2B3Q16720 1220 aa17.34■□□□□ 0.37
SPCS3-204ENST00000513139 TREML2Q5T2D2 321 aa17.34■□□□□ 0.37
SPCS3-204ENST00000513139 Q7L0L9 218 aa17.34■□□□□ 0.37
SPCS3-204ENST00000513139 TBC1D2Q9BYX2 928 aa17.34■□□□□ 0.37
SPCS3-204ENST00000513139 OGDHLQ9ULD0 1010 aa17.34■□□□□ 0.37
SPCS3-204ENST00000513139 CIAO1O76071 339 aa17.33■□□□□ 0.36
SPCS3-204ENST00000513139 C11orf49Q9H6J7 331 aa17.33■□□□□ 0.36
SPCS3-204ENST00000513139 CEP126Q9P2H0 1117 aa17.33■□□□□ 0.36
SPCS3-204ENST00000513139 PDS5AQ29RF7 1337 aaKnown RBP17.32■□□□□ 0.36
SPCS3-204ENST00000513139 OSBPL5Q9H0X9 879 aaPredicted RBP17.32■□□□□ 0.36
SPCS3-204ENST00000513139 DDX4Q9NQI0 724 aaKnown RBP17.32■□□□□ 0.36
SPCS3-204ENST00000513139 VCANP13611 3396 aa17.31■□□□□ 0.36
SPCS3-204ENST00000513139 SYN1P17600 705 aa17.31■□□□□ 0.36
SPCS3-204ENST00000513139 PHKA1P46020 1223 aa17.31■□□□□ 0.36
SPCS3-204ENST00000513139 MAP3K21Q5TCX8 1036 aa17.31■□□□□ 0.36
SPCS3-204ENST00000513139 DZIP1Q86YF9 867 aaKnown RBP17.31■□□□□ 0.36
SPCS3-204ENST00000513139 MRPL50Q8N5N7 158 aaKnown RBP17.31■□□□□ 0.36
SPCS3-204ENST00000513139 ZNF280CQ8ND82 737 aa17.31■□□□□ 0.36
SPCS3-204ENST00000513139 UBE2OQ9C0C9 1292 aaKnown RBP17.31■□□□□ 0.36
SPCS3-204ENST00000513139 MRS2Q9HD23 443 aa17.31■□□□□ 0.36
SPCS3-204ENST00000513139 EYSQ5T1H1 3165 aa17.3■□□□□ 0.36
SPCS3-204ENST00000513139 SPP2Q13103 211 aa17.3■□□□□ 0.36
SPCS3-204ENST00000513139 SPTY2D1Q68D10 685 aaPredicted RBP17.3■□□□□ 0.36
SPCS3-204ENST00000513139 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.3■□□□□ 0.36
SPCS3-204ENST00000513139 MORF4L1Q9UBU8 362 aa17.3■□□□□ 0.36
SPCS3-204ENST00000513139 FRMPD3Q5JV73 1810 aa17.3■□□□□ 0.36
SPCS3-204ENST00000513139 COL2A1P02458 1487 aaPredicted RBP17.3■□□□□ 0.36
SPCS3-204ENST00000513139 MAP4K4O95819 1239 aaPredicted RBP17.29■□□□□ 0.36
SPCS3-204ENST00000513139 SLURP2P0DP57 97 aa17.29■□□□□ 0.36
SPCS3-204ENST00000513139 XRCC5P13010 732 aaKnown RBP17.29■□□□□ 0.36
SPCS3-204ENST00000513139 TRIM32Q13049 653 aa17.29■□□□□ 0.36
SPCS3-204ENST00000513139 PICALMQ13492 652 aa17.29■□□□□ 0.36
SPCS3-204ENST00000513139 SH3D19Q5HYK7 790 aa17.29■□□□□ 0.36
SPCS3-204ENST00000513139 FAM109BQ6ICB4 259 aaPredicted RBP17.29■□□□□ 0.36
SPCS3-204ENST00000513139 CCDC84Q86UT8 332 aaPredicted RBP17.29■□□□□ 0.36
SPCS3-204ENST00000513139 TRIB2Q92519 343 aa17.29■□□□□ 0.36
SPCS3-204ENST00000513139 COL25A1Q9BXS0 654 aaPredicted RBP17.29■□□□□ 0.36
SPCS3-204ENST00000513139 ASCC2Q9H1I8 757 aaPredicted RBP17.29■□□□□ 0.36
SPCS3-204ENST00000513139 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.29■□□□□ 0.36
SPCS3-204ENST00000513139 MROH7-TTC4A0A0A0MT08 1334 aa17.28■□□□□ 0.36
SPCS3-204ENST00000513139 PFASO15067 1338 aa17.28■□□□□ 0.36
SPCS3-204ENST00000513139 PRUNE2Q8WUY3 3088 aa17.28■□□□□ 0.36
SPCS3-204ENST00000513139 GPR75-ASB3A0A0A6YYF3 556 aa17.28■□□□□ 0.36
SPCS3-204ENST00000513139 COL6A1P12109 1028 aa17.28■□□□□ 0.36
SPCS3-204ENST00000513139 IL15P40933 162 aaPredicted RBP17.28■□□□□ 0.36
SPCS3-204ENST00000513139 BTDP43251 543 aa17.28■□□□□ 0.36
SPCS3-204ENST00000513139 HMGCS2P54868 508 aa17.28■□□□□ 0.36
SPCS3-204ENST00000513139 CCDC102BQ68D86 513 aa17.28■□□□□ 0.36
SPCS3-204ENST00000513139 TRMT44Q8IYL2 757 aaKnown RBP17.28■□□□□ 0.36
SPCS3-204ENST00000513139 SIL1Q9H173 461 aa17.28■□□□□ 0.36
SPCS3-204ENST00000513139 RHBDL3P58872 404 aa17.27■□□□□ 0.36
SPCS3-204ENST00000513139 MIER1Q8N108 512 aa17.27■□□□□ 0.36
SPCS3-204ENST00000513139 SOCS4Q8WXH5 440 aa17.27■□□□□ 0.36
SPCS3-204ENST00000513139 ABCF2Q9UG63 623 aa17.27■□□□□ 0.36
SPCS3-204ENST00000513139 USP17L5A8MUK1 530 aa17.26■□□□□ 0.35
SPCS3-204ENST00000513139 POTEB2H3BUK9 544 aa17.26■□□□□ 0.35
SPCS3-204ENST00000513139 PRKAR2AP13861 404 aaKnown RBP17.26■□□□□ 0.35
SPCS3-204ENST00000513139 CAP2P40123 477 aa17.26■□□□□ 0.35
SPCS3-204ENST00000513139 RASGRF1Q13972 1273 aa17.26■□□□□ 0.35
SPCS3-204ENST00000513139 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.26■□□□□ 0.35
SPCS3-204ENST00000513139 NUDT12Q9BQG2 462 aa17.26■□□□□ 0.35
SPCS3-204ENST00000513139 AS3MTQ9HBK9 375 aa17.26■□□□□ 0.35
SPCS3-204ENST00000513139 HOXA7P31268 230 aaPredicted RBP17.25■□□□□ 0.35
SPCS3-204ENST00000513139 HERC5Q9UII4 1024 aaKnown RBP17.25■□□□□ 0.35
SPCS3-204ENST00000513139 MAST2Q6P0Q8 1798 aa17.25■□□□□ 0.35
SPCS3-204ENST00000513139 CDK5RAP2Q96SN8 1893 aa17.24■□□□□ 0.35
SPCS3-204ENST00000513139 SIPA1L1O43166 1804 aa17.24■□□□□ 0.35
SPCS3-204ENST00000513139 FAM196BA6NMK8 535 aa17.24■□□□□ 0.35
SPCS3-204ENST00000513139 CYP2B6P20813 491 aa17.24■□□□□ 0.35
SPCS3-204ENST00000513139 ADORA1P30542 326 aa17.24■□□□□ 0.35
SPCS3-204ENST00000513139 IRX3P78415 501 aaPredicted RBP17.24■□□□□ 0.35
SPCS3-204ENST00000513139 MECOMQ03112 1051 aa17.24■□□□□ 0.35
SPCS3-204ENST00000513139 ERICH6Q7L0X2 663 aa17.24■□□□□ 0.35
SPCS3-204ENST00000513139 WDR18Q9BV38 432 aa17.24■□□□□ 0.35
SPCS3-204ENST00000513139 FOCADQ5VW36 1801 aa17.24■□□□□ 0.35
SPCS3-204ENST00000513139 LDHCP07864 332 aa17.23■□□□□ 0.35
SPCS3-204ENST00000513139 UBTFL1P0CB47 393 aaPredicted RBP17.23■□□□□ 0.35
SPCS3-204ENST00000513139 MAPK4P31152 587 aa17.23■□□□□ 0.35
SPCS3-204ENST00000513139 CACNB2Q08289 660 aaPredicted RBP17.23■□□□□ 0.35
SPCS3-204ENST00000513139 GPRC5AQ8NFJ5 357 aa17.23■□□□□ 0.35
SPCS3-204ENST00000513139 SSH1Q8WYL5 1049 aa17.23■□□□□ 0.35
SPCS3-204ENST00000513139 USP6NLQ92738 828 aa17.23■□□□□ 0.35
SPCS3-204ENST00000513139 COPRSQ9NQ92 184 aa17.23■□□□□ 0.35
SPCS3-204ENST00000513139 HDAC5Q9UQL6 1122 aa17.23■□□□□ 0.35
SPCS3-204ENST00000513139 SSUH2Q9Y2M2 353 aa17.23■□□□□ 0.35
SPCS3-204ENST00000513139 ZNF521Q96K83 1311 aa17.22■□□□□ 0.35
SPCS3-204ENST00000513139 ZKSCAN1P17029 563 aaPredicted RBP17.22■□□□□ 0.35
SPCS3-204ENST00000513139 BACE1P56817 501 aa17.22■□□□□ 0.35
SPCS3-204ENST00000513139 GSTO1P78417 241 aa17.22■□□□□ 0.35
SPCS3-204ENST00000513139 PDE3AQ14432 1141 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms