RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 UHRF1Q96T88 793 aaPredicted RBP11.57□□□□□ -0.56
NUP54-211ENST00000512151 ASCC2Q9H1I8 757 aaPredicted RBP11.57□□□□□ -0.56
NUP54-211ENST00000512151 ADAMTS8Q9UP79 889 aa11.57□□□□□ -0.56
NUP54-211ENST00000512151 MAST3O60307 1309 aa11.56□□□□□ -0.56
NUP54-211ENST00000512151 XRCC5P13010 732 aaKnown RBP11.56□□□□□ -0.56
NUP54-211ENST00000512151 ZKSCAN1P17029 563 aaPredicted RBP11.56□□□□□ -0.56
NUP54-211ENST00000512151 EPHB4P54760 987 aa11.56□□□□□ -0.56
NUP54-211ENST00000512151 FLIIQ13045 1269 aa11.56□□□□□ -0.56
NUP54-211ENST00000512151 SH3RF1Q7Z6J0 888 aa11.56□□□□□ -0.56
NUP54-211ENST00000512151 PPM1EQ8WY54 764 aa11.56□□□□□ -0.56
NUP54-211ENST00000512151 STK31Q9BXU1 1019 aa11.56□□□□□ -0.56
NUP54-211ENST00000512151 TXNRD2Q9NNW7 524 aa11.56□□□□□ -0.56
NUP54-211ENST00000512151 USP40Q9NVE5 1235 aa11.56□□□□□ -0.56
NUP54-211ENST00000512151 MORF4L1Q9UBU8 362 aa11.56□□□□□ -0.56
NUP54-211ENST00000512151 PNMA3Q9UL41 463 aa11.56□□□□□ -0.56
NUP54-211ENST00000512151 SUGT1Q9Y2Z0 365 aa11.56□□□□□ -0.56
NUP54-211ENST00000512151 DNAH12Q6ZR08 3092 aa11.56□□□□□ -0.56
NUP54-211ENST00000512151 DDTLA6NHG4 134 aaPredicted RBP11.55□□□□□ -0.56
NUP54-211ENST00000512151 CTNND1O60716 968 aaKnown RBP11.55□□□□□ -0.56
NUP54-211ENST00000512151 RGS3P49796 1198 aa11.55□□□□□ -0.56
NUP54-211ENST00000512151 POTEEQ6S8J3 1075 aa11.55□□□□□ -0.56
NUP54-211ENST00000512151 PROCA1Q8NCQ7 364 aaPredicted RBP11.55□□□□□ -0.56
NUP54-211ENST00000512151 ATXN2LQ8WWM7 1075 aaKnown RBP11.55□□□□□ -0.56
NUP54-211ENST00000512151 TSR2Q969E8 191 aaKnown RBP11.55□□□□□ -0.56
NUP54-211ENST00000512151 NUDT12Q9BQG2 462 aa11.55□□□□□ -0.56
NUP54-211ENST00000512151 PRKAG2Q9UGJ0 569 aa11.55□□□□□ -0.56
NUP54-211ENST00000512151 ATP11BQ9Y2G3 1177 aa11.55□□□□□ -0.56
NUP54-211ENST00000512151 RLFQ13129 1914 aa11.55□□□□□ -0.56
NUP54-211ENST00000512151 MYO9BQ13459 2157 aa11.55□□□□□ -0.56
NUP54-211ENST00000512151 RFX7Q2KHR2 1363 aa11.55□□□□□ -0.56
NUP54-211ENST00000512151 TCF20Q9UGU0 1960 aaKnown RBP11.55□□□□□ -0.56
NUP54-211ENST00000512151 MUC6Q6W4X9 2439 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 TRIM43BA6NCK2 446 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 C19orf67A6NJJ6 358 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 HMGCS2P54868 508 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 DDX10Q13206 875 aaKnown RBP11.54□□□□□ -0.56
NUP54-211ENST00000512151 LRRC24Q50LG9 513 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 VGLL2Q8N8G2 317 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 TRIM43Q96BQ3 446 aaPredicted RBP11.54□□□□□ -0.56
NUP54-211ENST00000512151 PRDM5Q9NQX1 630 aaPredicted RBP11.54□□□□□ -0.56
NUP54-211ENST00000512151 LRRFIP2Q9Y608 721 aaKnown RBP11.54□□□□□ -0.56
NUP54-211ENST00000512151 F6X3S4 739 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 ITGB8P26012 769 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 PRDX5P30044 214 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 SPP2Q13103 211 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 FKBP5Q13451 457 aaPredicted RBP11.54□□□□□ -0.56
NUP54-211ENST00000512151 PDE3AQ14432 1141 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 CAVIN4Q5BKX8 364 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 MORN1Q5T089 497 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 BEND3Q5T5X7 828 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 KAZALD1Q96I82 304 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 LRFN3Q9BTN0 628 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 DDX4Q9NQI0 724 aaKnown RBP11.54□□□□□ -0.56
NUP54-211ENST00000512151 PDLIM7Q9NR12 457 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 FLRT1Q9NZU1 646 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 THEGQ9P2T0 379 aa11.54□□□□□ -0.56
NUP54-211ENST00000512151 ARIH1Q9Y4X5 557 aaPredicted RBP11.54□□□□□ -0.56
NUP54-211ENST00000512151 MROH5Q6ZUA9 1318 aa11.53□□□□□ -0.56
NUP54-211ENST00000512151 FAM196BA6NMK8 535 aa11.53□□□□□ -0.56
NUP54-211ENST00000512151 APAF1O14727 1248 aa11.53□□□□□ -0.56
NUP54-211ENST00000512151 DNAJB2P25686 324 aa11.53□□□□□ -0.56
NUP54-211ENST00000512151 MRPS5P82675 430 aaKnown RBP11.53□□□□□ -0.56
NUP54-211ENST00000512151 RRP1BQ14684 758 aaKnown RBP11.53□□□□□ -0.56
NUP54-211ENST00000512151 Q3C1V9 767 aa11.53□□□□□ -0.56
NUP54-211ENST00000512151 TRIM60Q495X7 471 aa11.53□□□□□ -0.56
NUP54-211ENST00000512151 TRMT44Q8IYL2 757 aaKnown RBP11.53□□□□□ -0.56
NUP54-211ENST00000512151 SOCS4Q8WXH5 440 aa11.53□□□□□ -0.56
NUP54-211ENST00000512151 RNPC3Q96LT9 517 aaKnown RBP11.53□□□□□ -0.56
NUP54-211ENST00000512151 P2RX7Q99572 595 aaKnown RBP11.53□□□□□ -0.56
NUP54-211ENST00000512151 C1QTNF1Q9BXJ1 281 aa11.53□□□□□ -0.56
NUP54-211ENST00000512151 CHMP4AQ9BY43 222 aa11.53□□□□□ -0.56
NUP54-211ENST00000512151 PORCNQ9H237 461 aa11.53□□□□□ -0.56
NUP54-211ENST00000512151 ZNF576Q9H609 170 aa11.53□□□□□ -0.56
NUP54-211ENST00000512151 ENTPD3O75355 529 aa11.52□□□□□ -0.57
NUP54-211ENST00000512151 GJC2Q5T442 439 aaPredicted RBP11.52□□□□□ -0.57
NUP54-211ENST00000512151 SLC39A5Q6ZMH5 540 aa11.52□□□□□ -0.57
NUP54-211ENST00000512151 ALYREFQ86V81 257 aaKnown RBP11.52□□□□□ -0.57
NUP54-211ENST00000512151 TRPV1Q8NER1 839 aa11.52□□□□□ -0.57
NUP54-211ENST00000512151 SUCLG2Q96I99 432 aa11.52□□□□□ -0.57
NUP54-211ENST00000512151 IDI2Q9BXS1 227 aa11.52□□□□□ -0.57
NUP54-211ENST00000512151 EPHX3Q9H6B9 360 aa11.52□□□□□ -0.57
NUP54-211ENST00000512151 DDX20Q9UHI6 824 aaKnown RBP11.52□□□□□ -0.57
NUP54-211ENST00000512151 GRM8O00222 908 aa11.51□□□□□ -0.57
NUP54-211ENST00000512151 DNM1LO00429 736 aa11.51□□□□□ -0.57
NUP54-211ENST00000512151 FGFR2P21802 821 aa11.51□□□□□ -0.57
NUP54-211ENST00000512151 RGS2P41220 211 aa11.51□□□□□ -0.57
NUP54-211ENST00000512151 ADGRE1Q14246 886 aa11.51□□□□□ -0.57
NUP54-211ENST00000512151 WDR43Q15061 677 aaKnown RBP eCLIP11.51□□□□□ -0.57
NUP54-211ENST00000512151 CCDC85BQ15834 202 aaPredicted RBP11.51□□□□□ -0.57
NUP54-211ENST00000512151 TWISTNBQ3B726 338 aaPredicted RBP11.51□□□□□ -0.57
NUP54-211ENST00000512151 METTL24Q5JXM2 366 aa11.51□□□□□ -0.57
NUP54-211ENST00000512151 GPR142Q7Z601 462 aa11.51□□□□□ -0.57
NUP54-211ENST00000512151 ZSCAN29Q8IWY8 852 aaPredicted RBP11.51□□□□□ -0.57
NUP54-211ENST00000512151 ZNF280CQ8ND82 737 aa11.51□□□□□ -0.57
NUP54-211ENST00000512151 SNX27Q96L92 541 aa11.51□□□□□ -0.57
NUP54-211ENST00000512151 APBA2Q99767 749 aa11.51□□□□□ -0.57
NUP54-211ENST00000512151 RBPJLQ9UBG7 517 aa11.51□□□□□ -0.57
NUP54-211ENST00000512151 MYH13Q9UKX3 1938 aa11.5□□□□□ -0.57
NUP54-211ENST00000512151 PDE8BO95263 885 aa11.5□□□□□ -0.57
NUP54-211ENST00000512151 CALD1Q05682 793 aaKnown RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms